Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002634

Physical Location & Seq

Genomic Coordinates Reverse (-)

1703825 .. 1705648

Gene Structure 1824 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG024100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGAGTGTAGGCTGGTTAACTGTAGAAATCCACTGGGGTAATAGAGCTTATAAACCAAATTCCCGCCTCGCCCAAGTATTGGACATTCTCTTCATACTCCACGCTGAACATGAGATGAATTGCTCAACGGCTGCTGCTCGGCATCTGGCGTCAAGTGGTGTGGATGTTTACACTGCCCTTTCTGGAGCTGTTGGAGCTCTATATGGTCCCCTTCATGGTGGAGCAAATGAGGCTGTGCTTAAGATGCTAAGTGAAATTGGATCTGTTGAGAACATTCCAGAGTTCATTGAGGGTGTGAAAAGCAGGGCAATGGGATTTCCAACGGAGTTCTTCCCAGTTTTATTTGCAATCCCTAGAATGGCTGGTTACTTGGCACACTGGAGAGAATCCCTGGATGCCCAAGCAGGTTTCATGCAGGGCTGTTCAAAAGCACAAGTCATGGATCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004108 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009506 GO:0009514 GO:0009987 GO:0016042 GO:0016054 GO:0016740 GO:0016746 GO:0019395 GO:0019752 GO:0030054 GO:0030258 GO:0032787 GO:0034440 GO:0036440 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046912 GO:0055044 GO:0055114 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00020 ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map00630 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Citrate_synt

Protein Analysis

149

Amino Acids

16.18

Weight (kDa)

5.81

Isoelectric Point (pI)

31.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Citrate_synt	PF00285	16 - 106	8.7e-35	Citrate synthase, C-terminal domain
Citrate_synt	PF00285	95 - 131	1.7e-08	Citrate synthase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42790 AT3G58740 AT3G58750
fragaria_vesca	FvH4_5g27540 FvH4_6g37750
malus_domestica	MD09G1156400.v1.1 MD17G1142900.v1.1
prunus_persica	Prupe.3G169400_v2.0.a1
pyrus_communis	pycom09g07510 pycom17g13590 pycom17g13600
rosa_chinensis	RchiOBHm_Chr2g0143111 RchiOBHm_Chr2g0150811 RchiOBHm_Chr7g0233461
rosa_laevigata	RLG00000020508
rosa_multiflora	Rmu_co8164368.1_g000001 Rmu_co8192116.1_g000001 Rmu_co8272387.1_g000001 Rmu_sc0003819.1_g000005 Rmu_sc0004794.1_g000003 Rmu_sc0020410.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096940 Rroxscaffold_3G00251810
rosa_rugosa	Rorug02G0103600 Rorug02G0179700 Rorug02G0422600
rosa_samantha	Rh2AG024100 Rh2AG482700 Rh2BG495300 Rh2CG469000 Rh2DG450300 Rh2DG506100 Rh4CG229100 Rh4DG032400 Rh4DG200800 Rh5AG029300 Rh5CG031600 Rh5DG497900 Rh6CG201800
rosa_wichuraiana	Rw2G039560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	51
Acc36I	ACCTGC	1 cut(s)	395
AccB7I	CCANNNNNTGG	1 cut(s)	79
AciI	CCGC	1 cut(s)	64
AclWI	GGATC	1 cut(s)	268
AcsI	RAATTY	1 cut(s)	58
AcyI	GRCGYC	1 cut(s)	149
AfiI	CCNNNNNNNGG	3 cut(s)	79, 215, 358
AflII	CTTAAG	1 cut(s)	239
AgsI	TTSAA	1 cut(s)	426
AjnI	CCWGG	1 cut(s)	390
AluBI	AGCT	3 cut(s)	47, 188, 197
AluI	AGCT	3 cut(s)	47, 188, 197
Alw21I	GWGCWC	1 cut(s)	199
AlwI	GGATC	1 cut(s)	268
ApeKI	GCWGC	2 cut(s)	131, 134
ApoI	RAATTY	1 cut(s)	58
AspS9I	GGNCC	1 cut(s)	206
AvaII	GGWCC	1 cut(s)	206
BanII	GRGCYC	1 cut(s)	199
Bbv12I	GWGCWC	1 cut(s)	199
BbvI	GCAGC	2 cut(s)	118, 121
BceAI	ACGGC	1 cut(s)	144
BciT130I	CCWGG	1 cut(s)	392
BfaI	CTAG	1 cut(s)	354
BfmI	CTRYAG	1 cut(s)	21
BfrI	CTTAAG	1 cut(s)	239
BfuAI	ACCTGC	1 cut(s)	395
BisI	GCNGC	2 cut(s)	132, 135
BlsI	GCNGC	2 cut(s)	133, 136
Bme1390I	CCNGG	1 cut(s)	392
Bme18I	GGWCC	1 cut(s)	206
BmgT120I	GGNCC	1 cut(s)	206
BmiI	GGNNCC	1 cut(s)	208
BmrFI	CCNGG	1 cut(s)	392
BmrI	ACTGGG	2 cut(s)	43, 329
BmsI	GCATC	3 cut(s)	151, 234, 385
BmuI	ACTGGG	2 cut(s)	43, 329
BpmI	CTGGAG	2 cut(s)	204, 400
BsaHI	GRCGYC	1 cut(s)	149
BsaJI	CCNNGG	1 cut(s)	390
Bsc4I	CCNNNNNNNGG	3 cut(s)	79, 215, 358
Bse1I	ACTGG	3 cut(s)	38, 335, 383
Bse3DI	GCAATG	1 cut(s)	315
BseBI	CCWGG	1 cut(s)	392
BseDI	CCNNGG	1 cut(s)	390
BseGI	GGATG	2 cut(s)	169, 400
BseLI	CCNNNNNNNGG	3 cut(s)	79, 215, 358
BseMI	GCAATG	1 cut(s)	315
BseNI	ACTGG	3 cut(s)	38, 335, 383
BseXI	GCAGC	2 cut(s)	118, 121
BsiHKAI	GWGCWC	1 cut(s)	199
BslFI	GGGAC	1 cut(s)	192
BslI	CCNNNNNNNGG	3 cut(s)	79, 215, 358
BsmFI	GGGAC	1 cut(s)	192
Bsp1286I	GDGCHC	1 cut(s)	199
Bsp143I	GATC	2 cut(s)	260, 442
BspACI	CCGC	1 cut(s)	64
BspLI	GGNNCC	1 cut(s)	208
BspMI	ACCTGC	1 cut(s)	395
BspPI	GGATC	1 cut(s)	268
BspTI	CTTAAG	1 cut(s)	239
BsrDI	GCAATG	1 cut(s)	315
BsrI	ACTGG	3 cut(s)	38, 335, 383
BssECI	CCNNGG	1 cut(s)	390
BssMI	GATC	2 cut(s)	260, 442
BssNI	GRCGYC	1 cut(s)	149
Bst2UI	CCWGG	1 cut(s)	392
Bst4CI	ACNGT	1 cut(s)	22
Bst6I	CTCTTC	1 cut(s)	95
BstACI	GRCGYC	1 cut(s)	149
BstAFI	CTTAAG	1 cut(s)	239
BstDEI	CTNAG	1 cut(s)	248
BstF5I	GGATG	2 cut(s)	169, 400
BstKTI	GATC	2 cut(s)	263, 445
BstMBI	GATC	2 cut(s)	260, 442
BstMWI	GCNNNNNNNGC	3 cut(s)	194, 230, 244
BstNI	CCWGG	1 cut(s)	392
BstSCI	CCNGG	1 cut(s)	390
BstSFI	CTRYAG	1 cut(s)	21
BstV1I	GCAGC	2 cut(s)	118, 121
BstX2I	RGATCY	1 cut(s)	260
BstYI	RGATCY	1 cut(s)	260
BtsCI	GGATG	2 cut(s)	169, 400
BtsI	GCAGTG	1 cut(s)	171
BtsIMutI	CAGTG	3 cut(s)	31, 171, 376
BveI	ACCTGC	1 cut(s)	395
Cfr13I	GGNCC	1 cut(s)	206
CseI	GACGC	1 cut(s)	138
CspCI	CAANNNNNGTGG	2 cut(s)	141, 176
CviAII	CATG	4 cut(s)	110, 215, 412, 439
CviJI	RGCY	8 cut(s)	12, 47, 131, 188, 197, 233, 362, 420
CviKI_1	RGCY	8 cut(s)	12, 47, 131, 188, 197, 233, 362, 420
DdeI	CTNAG	1 cut(s)	248
DpnI	GATC	2 cut(s)	262, 444
DpnII	GATC	2 cut(s)	260, 442
Eam1104I	CTCTTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	95
Ecl136II	GAGCTC	1 cut(s)	197
Eco24I	GRGCYC	1 cut(s)	199
Eco47I	GGWCC	1 cut(s)	206
Eco53kI	GAGCTC	1 cut(s)	197
EcoICRI	GAGCTC	1 cut(s)	197
EcoRII	CCWGG	1 cut(s)	390
EcoT38I	GRGCYC	1 cut(s)	199
FaeI	CATG	4 cut(s)	113, 218, 415, 442
FaiI	YATR	8 cut(s)	51, 95, 111, 202, 204, 216, 413, 440
FaqI	GGGAC	1 cut(s)	192
FatI	CATG	4 cut(s)	109, 214, 411, 438
FauI	CCCGC	1 cut(s)	71
Fnu4HI	GCNGC	2 cut(s)	132, 135
FokI	GGATG	2 cut(s)	176, 407
FriOI	GRGCYC	1 cut(s)	199
Fsp4HI	GCNGC	2 cut(s)	132, 135
FspBI	CTAG	1 cut(s)	354
GluI	GCNGC	2 cut(s)	132, 135
GsuI	CTGGAG	2 cut(s)	204, 400
HgaI	GACGC	1 cut(s)	138
Hin1I	GRCGYC	1 cut(s)	149
Hin1II	CATG	4 cut(s)	113, 218, 415, 442
HincII	GTYRAC	1 cut(s)	18
HindII	GTYRAC	1 cut(s)	18
HinfI	GANTC	1 cut(s)	386
HpaI	GTTAAC	1 cut(s)	18
Hpy166II	GTNNAC	2 cut(s)	18, 169
Hpy188III	TCNNGA	2 cut(s)	183, 278
Hpy8I	GTNNAC	2 cut(s)	18, 169
HpyAV	CCTTC	1 cut(s)	221
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4V	TGCA	2 cut(s)	347, 415
HpyF10VI	GCNNNNNNNGC	3 cut(s)	194, 230, 244
HpyF3I	CTNAG	1 cut(s)	248
Hsp92I	GRCGYC	1 cut(s)	149
Hsp92II	CATG	4 cut(s)	113, 218, 415, 442
KspAI	GTTAAC	1 cut(s)	18
Kzo9I	GATC	2 cut(s)	260, 442
LmnI	GCTCC	3 cut(s)	185, 194, 221
Lsp1109I	GCAGC	2 cut(s)	118, 121
LweI	GCATC	3 cut(s)	151, 234, 385
MaeI	CTAG	1 cut(s)	354
MaeIII	GTNAC	1 cut(s)	365
MalI	GATC	2 cut(s)	262, 444
MboI	GATC	2 cut(s)	260, 442
MboII	GAAGA	2 cut(s)	82, 322
MflI	RGATCY	1 cut(s)	260
MhlI	GDGCHC	1 cut(s)	199
MluCI	AATT	3 cut(s)	58, 118, 255
MmeI	TCCRAC	2 cut(s)	172, 344
MnlI	CCTC	3 cut(s)	77, 223, 283
MseI	TTAA	2 cut(s)	17, 240
MspCI	CTTAAG	1 cut(s)	239
MspR9I	CCNGG	1 cut(s)	392
MvaI	CCWGG	1 cut(s)	392
MwoI	GCNNNNNNNGC	3 cut(s)	194, 230, 244
NdeII	GATC	2 cut(s)	260, 442
NlaIII	CATG	4 cut(s)	113, 218, 415, 442
NlaIV	GGNNCC	1 cut(s)	208
NmeAIII	GCCGAG	1 cut(s)	118
PfeI	GAWTC	1 cut(s)	386
PflMI	CCANNNNNTGG	1 cut(s)	79
PkrI	GCNGC	2 cut(s)	133, 136
PsiI	TTATAA	1 cut(s)	51
Psp124BI	GAGCTC	1 cut(s)	199
Psp6I	CCWGG	1 cut(s)	390
PspGI	CCWGG	1 cut(s)	390
PspN4I	GGNNCC	1 cut(s)	208
PspPI	GGNCC	1 cut(s)	206
PsuI	RGATCY	1 cut(s)	260
SacI	GAGCTC	1 cut(s)	199
SaqAI	TTAA	2 cut(s)	17, 240
SatI	GCNGC	2 cut(s)	132, 135
Sau3AI	GATC	2 cut(s)	260, 442
Sau96I	GGNCC	1 cut(s)	206
ScrFI	CCNGG	1 cut(s)	392
SduI	GDGCHC	1 cut(s)	199
SetI	ASST	4 cut(s)	49, 190, 199, 409
SfaNI	GCATC	3 cut(s)	151, 234, 385
SfcI	CTRYAG	1 cut(s)	21
SinI	GGWCC	1 cut(s)	206
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
Sse9I	AATT	3 cut(s)	58, 118, 255
SsiI	CCGC	1 cut(s)	64
SspMI	CTAG	1 cut(s)	354
SstI	GAGCTC	1 cut(s)	199
StyD4I	CCNGG	1 cut(s)	390
TaaI	ACNGT	1 cut(s)	22
TasI	AATT	3 cut(s)	58, 118, 255
TfiI	GAWTC	1 cut(s)	386
Tru1I	TTAA	2 cut(s)	17, 240
Tru9I	TTAA	2 cut(s)	17, 240
TscAI	CASTG	3 cut(s)	38, 178, 383
TseI	GCWGC	2 cut(s)	131, 134
TspDTI	ATGAA	5 cut(s)	82, 131, 203, 274, 400
TspGWI	ACGGA	1 cut(s)	338
TspRI	CASTG	3 cut(s)	38, 178, 383
Van91I	CCANNNNNTGG	1 cut(s)	79
Vha464I	CTTAAG	1 cut(s)	239
VpaK11BI	GGWCC	1 cut(s)	206
XapI	RAATTY	1 cut(s)	58
XspI	CTAG	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.