Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020410.1

Orthogroup ID

OG0002634

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1409

Gene Structure 1409 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020410.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 433 bp

gggtaatagagcttataaaccaaattcccgcctcgcccaagtattggacattctcttcatactccacgttgaacatgagatgaattgctcaacggctgctgctcggcatctggcgtcaagtggtgtggatgtttacactgccctttctggagctgttggagctctatatggtccccttcatggtggagcaaatgaggctgtgcttaagatgctaagtgaaattggatctgttgagaacattccagagttcattgagggtgtgaagagcagggcaatgggatttccaacagagttcttcccagttttatttgcaatccctagaatggctggttacttggcacactggagagaatccctggatgcccaagcagggctgttcaaaagcacaagtcatggatcagtgaatgaagaagaagctgataggattgtataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004108 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009506 GO:0009514 GO:0009987 GO:0016042 GO:0016054 GO:0016740 GO:0016746 GO:0019395 GO:0019752 GO:0030054 GO:0030258 GO:0032787 GO:0034440 GO:0036440 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046912 GO:0055044 GO:0055114 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00020 ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map00630 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Citrate_synt

Protein Analysis

143

Amino Acids

15.41

Weight (kDa)

5.63

Isoelectric Point (pI)

28.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42790 AT3G58740 AT3G58750
fragaria_vesca	FvH4_5g27540 FvH4_6g37750
malus_domestica	MD09G1156400.v1.1 MD17G1142900.v1.1
prunus_persica	Prupe.3G169400_v2.0.a1
pyrus_communis	pycom09g07510 pycom17g13590 pycom17g13600
rosa_chinensis	RchiOBHm_Chr2g0143111 RchiOBHm_Chr2g0150811 RchiOBHm_Chr7g0233461
rosa_laevigata	RLG00000020508
rosa_multiflora	Rmu_co8164368.1_g000001 Rmu_co8192116.1_g000001 Rmu_co8272387.1_g000001 Rmu_sc0003819.1_g000005 Rmu_sc0004794.1_g000003 Rmu_sc0020410.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096940 Rroxscaffold_3G00251810
rosa_rugosa	Rorug02G0103600 Rorug02G0179700 Rorug02G0422600
rosa_samantha	Rh2AG024100 Rh2AG482700 Rh2BG495300 Rh2CG469000 Rh2DG450300 Rh2DG506100 Rh4CG229100 Rh4DG032400 Rh4DG200800 Rh5AG029300 Rh5CG031600 Rh5DG497900 Rh6CG201800
rosa_wichuraiana	Rw2G039560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	16
AccB7I	CCANNNNNTGG	1 cut(s)	44
AciI	CCGC	1 cut(s)	29
AclWI	GGATC	2 cut(s)	233, 404
AcsI	RAATTY	1 cut(s)	23
AcyI	GRCGYC	1 cut(s)	114
AfiI	CCNNNNNNNGG	4 cut(s)	44, 180, 323, 370
AflII	CTTAAG	1 cut(s)	204
AgsI	TTSAA	2 cut(s)	72, 380
AjnI	CCWGG	1 cut(s)	355
AluBI	AGCT	4 cut(s)	12, 153, 162, 417
AluI	AGCT	4 cut(s)	12, 153, 162, 417
Alw21I	GWGCWC	1 cut(s)	164
AlwI	GGATC	2 cut(s)	233, 404
ApeKI	GCWGC	2 cut(s)	96, 99
ApoI	RAATTY	1 cut(s)	23
AspS9I	GGNCC	1 cut(s)	171
AvaII	GGWCC	1 cut(s)	171
BanII	GRGCYC	1 cut(s)	164
Bbv12I	GWGCWC	1 cut(s)	164
BbvI	GCAGC	2 cut(s)	83, 86
BceAI	ACGGC	1 cut(s)	109
BciT130I	CCWGG	1 cut(s)	357
BfaI	CTAG	1 cut(s)	319
BfrI	CTTAAG	1 cut(s)	204
BisI	GCNGC	2 cut(s)	97, 100
BlsI	GCNGC	2 cut(s)	98, 101
Bme1390I	CCNGG	1 cut(s)	357
Bme18I	GGWCC	1 cut(s)	171
BmgT120I	GGNCC	1 cut(s)	171
BmiI	GGNNCC	1 cut(s)	173
BmrFI	CCNGG	1 cut(s)	357
BmrI	ACTGGG	1 cut(s)	294
BmsI	GCATC	3 cut(s)	116, 199, 350
BmuI	ACTGGG	1 cut(s)	294
BpmI	CTGGAG	2 cut(s)	169, 365
BsaHI	GRCGYC	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	355
Bsc4I	CCNNNNNNNGG	4 cut(s)	44, 180, 323, 370
Bse1I	ACTGG	2 cut(s)	300, 348
Bse3DI	GCAATG	1 cut(s)	280
BseBI	CCWGG	1 cut(s)	357
BseDI	CCNNGG	1 cut(s)	355
BseGI	GGATG	2 cut(s)	134, 365
BseLI	CCNNNNNNNGG	4 cut(s)	44, 180, 323, 370
BseMI	GCAATG	1 cut(s)	280
BseNI	ACTGG	2 cut(s)	300, 348
BseXI	GCAGC	2 cut(s)	83, 86
BsiHKAI	GWGCWC	1 cut(s)	164
BslFI	GGGAC	1 cut(s)	157
BslI	CCNNNNNNNGG	4 cut(s)	44, 180, 323, 370
BsmFI	GGGAC	1 cut(s)	157
Bsp1286I	GDGCHC	1 cut(s)	164
Bsp143I	GATC	2 cut(s)	225, 396
BspACI	CCGC	1 cut(s)	29
BspLI	GGNNCC	1 cut(s)	173
BspPI	GGATC	2 cut(s)	233, 404
BspQI	GCTCTTC	1 cut(s)	258
BspTI	CTTAAG	1 cut(s)	204
BsrDI	GCAATG	1 cut(s)	280
BsrI	ACTGG	2 cut(s)	300, 348
BssECI	CCNNGG	1 cut(s)	355
BssMI	GATC	2 cut(s)	225, 396
BssNI	GRCGYC	1 cut(s)	114
Bst2UI	CCWGG	1 cut(s)	357
Bst6I	CTCTTC	2 cut(s)	60, 258
BstACI	GRCGYC	1 cut(s)	114
BstAFI	CTTAAG	1 cut(s)	204
BstDEI	CTNAG	1 cut(s)	213
BstF5I	GGATG	2 cut(s)	134, 365
BstKTI	GATC	2 cut(s)	228, 399
BstMBI	GATC	2 cut(s)	225, 396
BstMWI	GCNNNNNNNGC	3 cut(s)	159, 195, 209
BstNI	CCWGG	1 cut(s)	357
BstSCI	CCNGG	1 cut(s)	355
BstV1I	GCAGC	2 cut(s)	83, 86
BstX2I	RGATCY	1 cut(s)	225
BstYI	RGATCY	1 cut(s)	225
BtsCI	GGATG	2 cut(s)	134, 365
BtsI	GCAGTG	1 cut(s)	136
BtsIMutI	CAGTG	3 cut(s)	136, 341, 406
Cfr13I	GGNCC	1 cut(s)	171
CseI	GACGC	1 cut(s)	103
CspCI	CAANNNNNGTGG	2 cut(s)	106, 141
CviAII	CATG	3 cut(s)	75, 180, 393
CviJI	RGCY	8 cut(s)	12, 96, 153, 162, 198, 327, 374, 417
CviKI_1	RGCY	8 cut(s)	12, 96, 153, 162, 198, 327, 374, 417
DdeI	CTNAG	1 cut(s)	213
DpnI	GATC	2 cut(s)	227, 398
DpnII	GATC	2 cut(s)	225, 396
Eam1104I	CTCTTC	2 cut(s)	60, 258
EarI	CTCTTC	2 cut(s)	60, 258
Ecl136II	GAGCTC	1 cut(s)	162
Eco24I	GRGCYC	1 cut(s)	164
Eco47I	GGWCC	1 cut(s)	171
Eco53kI	GAGCTC	1 cut(s)	162
EcoICRI	GAGCTC	1 cut(s)	162
EcoRII	CCWGG	1 cut(s)	355
EcoT38I	GRGCYC	1 cut(s)	164
FaeI	CATG	3 cut(s)	78, 183, 396
FaiI	YATR	8 cut(s)	16, 60, 76, 167, 169, 181, 394, 431
FaqI	GGGAC	1 cut(s)	157
FatI	CATG	3 cut(s)	74, 179, 392
FauI	CCCGC	1 cut(s)	36
Fnu4HI	GCNGC	2 cut(s)	97, 100
FokI	GGATG	2 cut(s)	141, 372
FriOI	GRGCYC	1 cut(s)	164
Fsp4HI	GCNGC	2 cut(s)	97, 100
FspBI	CTAG	1 cut(s)	319
GluI	GCNGC	2 cut(s)	97, 100
GsuI	CTGGAG	2 cut(s)	169, 365
HgaI	GACGC	1 cut(s)	103
Hin1I	GRCGYC	1 cut(s)	114
Hin1II	CATG	3 cut(s)	78, 183, 396
HinfI	GANTC	1 cut(s)	351
Hpy166II	GTNNAC	1 cut(s)	134
Hpy188III	TCNNGA	2 cut(s)	148, 243
Hpy8I	GTNNAC	1 cut(s)	134
HpyAV	CCTTC	1 cut(s)	186
HpyCH4IV	ACGT	1 cut(s)	67
HpyCH4V	TGCA	1 cut(s)	312
HpyF10VI	GCNNNNNNNGC	3 cut(s)	159, 195, 209
HpyF3I	CTNAG	1 cut(s)	213
HpySE526I	ACGT	1 cut(s)	67
Hsp92I	GRCGYC	1 cut(s)	114
Hsp92II	CATG	3 cut(s)	78, 183, 396
Kzo9I	GATC	2 cut(s)	225, 396
LguI	GCTCTTC	1 cut(s)	258
LmnI	GCTCC	3 cut(s)	150, 159, 186
Lsp1109I	GCAGC	2 cut(s)	83, 86
LweI	GCATC	3 cut(s)	116, 199, 350
MaeI	CTAG	1 cut(s)	319
MaeII	ACGT	1 cut(s)	67
MaeIII	GTNAC	1 cut(s)	330
MalI	GATC	2 cut(s)	227, 398
MboI	GATC	2 cut(s)	225, 396
MboII	GAAGA	5 cut(s)	47, 275, 287, 420, 423
MflI	RGATCY	1 cut(s)	225
MhlI	GDGCHC	1 cut(s)	164
MluCI	AATT	3 cut(s)	23, 83, 220
MmeI	TCCRAC	2 cut(s)	137, 309
MnlI	CCTC	3 cut(s)	42, 188, 248
MseI	TTAA	1 cut(s)	205
MspCI	CTTAAG	1 cut(s)	204
MspR9I	CCNGG	1 cut(s)	357
MvaI	CCWGG	1 cut(s)	357
MwoI	GCNNNNNNNGC	3 cut(s)	159, 195, 209
NdeII	GATC	2 cut(s)	225, 396
NlaIII	CATG	3 cut(s)	78, 183, 396
NlaIV	GGNNCC	1 cut(s)	173
NmeAIII	GCCGAG	1 cut(s)	83
PciSI	GCTCTTC	1 cut(s)	258
PfeI	GAWTC	1 cut(s)	351
PflMI	CCANNNNNTGG	1 cut(s)	44
PkrI	GCNGC	2 cut(s)	98, 101
PsiI	TTATAA	1 cut(s)	16
Psp124BI	GAGCTC	1 cut(s)	164
Psp6I	CCWGG	1 cut(s)	355
PspGI	CCWGG	1 cut(s)	355
PspN4I	GGNNCC	1 cut(s)	173
PspPI	GGNCC	1 cut(s)	171
PsuI	RGATCY	1 cut(s)	225
SacI	GAGCTC	1 cut(s)	164
SapI	GCTCTTC	1 cut(s)	258
SaqAI	TTAA	1 cut(s)	205
SatI	GCNGC	2 cut(s)	97, 100
Sau3AI	GATC	2 cut(s)	225, 396
Sau96I	GGNCC	1 cut(s)	171
ScrFI	CCNGG	1 cut(s)	357
SduI	GDGCHC	1 cut(s)	164
SetI	ASST	5 cut(s)	14, 70, 155, 164, 419
SfaNI	GCATC	3 cut(s)	116, 199, 350
SinI	GGWCC	1 cut(s)	171
SmlI	CTYRAG	1 cut(s)	204
SmoI	CTYRAG	1 cut(s)	204
Sse9I	AATT	3 cut(s)	23, 83, 220
SsiI	CCGC	1 cut(s)	29
SspMI	CTAG	1 cut(s)	319
SstI	GAGCTC	1 cut(s)	164
StyD4I	CCNGG	1 cut(s)	355
TaiI	ACGT	1 cut(s)	70
TasI	AATT	3 cut(s)	23, 83, 220
TfiI	GAWTC	1 cut(s)	351
Tru1I	TTAA	1 cut(s)	205
Tru9I	TTAA	1 cut(s)	205
TscAI	CASTG	3 cut(s)	143, 348, 406
TseI	GCWGC	2 cut(s)	96, 99
TspDTI	ATGAA	5 cut(s)	47, 96, 168, 239, 421
TspRI	CASTG	3 cut(s)	143, 348, 406
Van91I	CCANNNNNTGG	1 cut(s)	44
Vha464I	CTTAAG	1 cut(s)	204
VpaK11BI	GGWCC	1 cut(s)	171
XapI	RAATTY	1 cut(s)	23
XspI	CTAG	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.