pycom09g07500

Protein TOO MANY

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Forward (+)
5690100 .. 5691509
1410 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g07500.1

Sequence Viewer

Length: 1410 bp
ATGCTGCAACTCACCAAACCTGCTCCACACCTTGACACAATGTGCCTTCCCTTCTCACTCTCTCTCCCTCCACTTCTTCTCTTCCTTCTCCTCTCTCTCCCTCCTTCAACCAGCGCCGCCACCAACACCATGCTTCCATCTGAATCAGAAACCCTCTTCAAGATCATGGAATCCATGTCCTCTGATCAACCCTGGAGAATTTCTCACCCTGACCCTTGCCAAGCTTCCTCCTCCTGGCCCGGAATCGAGTGCAAAATCGGAAAAGACAATCGCCCCCATGTCTCCCGGCTAGATTTTGGCTCCCCACCAAACCCCTCCTGCAAAAAAACGGCCGCATTCCCTTCCCTAATCTTCTCCCTCCCATTTCTCCAATCTGCTTTCTTCTTCAACTGCTTCACCCACACAAAAACCACCCTCTCTGTTTCTCAAAACAGAGCATCCTCCCCTGCCTCCCTCCAGCAGCTCAGCCTCCGGTCCAACCCGGCACTCACCGGCCCAATTCCACCTAAAATTTCCTCCCTCAAGTCCCTTGAAATCCTCACGTTGTCACAAAACCGCCTCTCCGGTCCGATCCCACCGGAGATTTTCACCCTCCAGAGACTAATCCACCTTGATTTGAGCTACAACATGTTCACAGGCACCATCCCTCTTCAGCTGGGCAGTCTTAGAAACCTCCAAGGCCTTGATTTGAGCTACAATTCTCTCACAGGCTCCATCCCAGACACAATTGGTCAACTGGTTTTGCTGCAAAAAGTTGACTTCAGCTCCAATCAACTCACAGGCTCCATCCCCAATGGCGTCGAAAAGCTCGGTTTATTGGTTTTCATGGCTCTAAGCAACAACAGGTTAAGTGGGCAATTTCCGAACGGATTGGAAAAGCTGCAGAGCTTGCAGTATTTCATTTTAGACGGCAATCCAATGCACATTCCTCTGCCATTGGAGTTTGGTAAATTGGTGAAACTCCAAGAACTCAGGCTGGCTGATTCCGGCTACTCGGGCACTATCCCGGAATCCTTCTCCCAGCTCAAGAATCTAAGCACTCTGTCGCTGCAGAACAACCGATTAACCGGCAAAATCCCGGTCGGGTTTGGGAGCCTCTCGCACATTTACCACATGAATCTGAGCAGGAACATGTTGGGGGGTGTTGTGCCTTTCAATGCAAGTTTCCTCAAGAGGTTGGGGAGGAACTTGGATCTCAGTGGAAACCCAGGTCTCTGTCTGAGTTCCTCAGAAGCTCACGGTTCGAAAGTTGGAGTTAATGCCTGTGGAAGCAGTGATCAGATTGCTTCACCAGCCTTGCCATCGAAGAATTCTCAAGCTCCTCTTCCATCTGGGATCTCCAAAAACCCATTTTTTCTGTTTGCTGTTTTGTGTGTTTGGAGATTGCATCATCAGATGCTTTTAGTGTGA

Protein Analysis

470

Amino Acids

50.94

Weight (kDa)

9.26

Isoelectric Point (pI)

50.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 218 - 299 3.2e-07 Leucine-rich repeat region
LRR_8 PF13855 320 - 379 4.7e-08 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 28
AccB1I GGYRCC 1 cut(s) 638
AciI CCGC 3 cut(s) 117, 333, 556
AclWI GGATC 3 cut(s) 565, 1200, 1343
AcoI YGGCCR 1 cut(s) 330
AcsI RAATTY 3 cut(s) 198, 510, 1309
AcuI CTGAAG 2 cut(s) 635, 745
AcyI GRCGYC 1 cut(s) 798
AdeI CACNNNGTG 1 cut(s) 42
AfiI CCNNNNNNNGG 1 cut(s) 234
AflIII ACRYGT 2 cut(s) 627, 1131
AgsI TTSAA 5 cut(s) 108, 160, 388, 533, 1156
AjnI CCWGG 3 cut(s) 191, 233, 1207
Alw26I GTCTC 3 cut(s) 286, 592, 1217
AlwI GGATC 3 cut(s) 565, 1200, 1343
Ama87I CYCGRG 1 cut(s) 994
AoxI GGCC 4 cut(s) 236, 330, 493, 679
ApeKI GCWGC 5 cut(s) 4, 460, 745, 880, 1048
ApoI RAATTY 3 cut(s) 198, 510, 1309
ArsI GACNNNNNNTTYG 2 cut(s) 1065, 1097
AspLEI GCGC 1 cut(s) 116
AspS9I GGNCC 4 cut(s) 237, 474, 494, 566
AsuC2I CCSGG 5 cut(s) 240, 286, 482, 1007, 1079
AsuHPI GGTGA 7 cut(s) 4, 197, 388, 481, 580, 967, 1281
AsuII TTCGAA 1 cut(s) 1244
AvaI CYCGRG 1 cut(s) 994
AvaII GGWCC 2 cut(s) 474, 566
BaeGI GKGCMC 1 cut(s) 1001
BanI GGYRCC 1 cut(s) 638
BbvI GCAGC 4 cut(s) 472, 732, 867, 1035
BccI CCATC 6 cut(s) 145, 650, 722, 794, 1309, 1336
BceAI ACGGC 2 cut(s) 345, 925
BciT130I CCWGG 3 cut(s) 193, 235, 1209
BclI TGATCA 2 cut(s) 184, 1276
BcnI CCSGG 5 cut(s) 240, 286, 482, 1007, 1079
BcoDI GTCTC 3 cut(s) 286, 592, 1217
BfaI CTAG 1 cut(s) 290
BfmI CTRYAG 2 cut(s) 881, 1049
BfoI RGCGCY 1 cut(s) 117
BfuAI ACCTGC 1 cut(s) 28
BisI GCNGC 7 cut(s) 5, 117, 333, 461, 746, 881, 1049
BlpI GCTNAGC 1 cut(s) 464
BlsI GCNGC 7 cut(s) 6, 118, 334, 462, 747, 882, 1050
Bme1390I CCNGG 8 cut(s) 193, 235, 240, 286, 482, 1007, 1079, 1209
Bme18I GGWCC 2 cut(s) 474, 566
BmeT110I CYCGRG 1 cut(s) 994
BmgT120I GGNCC 4 cut(s) 237, 474, 494, 566
BmiI GGNNCC 5 cut(s) 301, 640, 712, 784, 1094
BmrFI CCNGG 8 cut(s) 193, 235, 240, 286, 482, 1007, 1079, 1209
BmsI GCATC 3 cut(s) 446, 1386, 1396
BplI GAGNNNNNCTC 2 cut(s) 187, 219
BpmI CTGGAG 3 cut(s) 214, 440, 578
Bpu1102I GCTNAGC 1 cut(s) 464
Bpu14I TTCGAA 1 cut(s) 1244
BpuEI CTTGAG 4 cut(s) 506, 1010, 1154, 1299
BpuMI CCSGG 5 cut(s) 240, 286, 482, 1007, 1079
BsaHI GRCGYC 1 cut(s) 798
BsaI GGTCTC 1 cut(s) 1217
BsaJI CCNNGG 3 cut(s) 191, 676, 1207
BsaWI WCCGGW 3 cut(s) 471, 563, 577
BsaXI ACNNNNNCTCC 6 cut(s) 48, 78, 545, 575, 749, 779
Bsc4I CCNNNNNNNGG 1 cut(s) 234
Bse118I RCCGGY 2 cut(s) 491, 1067
Bse1I ACTGG 1 cut(s) 741
BseBI CCWGG 3 cut(s) 193, 235, 1209
BseDI CCNNGG 3 cut(s) 191, 676, 1207
BseGI GGATG 4 cut(s) 437, 642, 714, 786
BseLI CCNNNNNNNGG 1 cut(s) 234
BseMII CTCAG 6 cut(s) 478, 985, 1112, 1210, 1211, 1242
BseNI ACTGG 1 cut(s) 741
BseRI GAGGAG 3 cut(s) 80, 220, 1311
BseSI GKGCMC 1 cut(s) 1001
BseX3I CGGCCG 1 cut(s) 330
BseXI GCAGC 4 cut(s) 472, 732, 867, 1035
BseYI CCCAGC 2 cut(s) 655, 1020
Bsh1285I CGRYCG 2 cut(s) 333, 1083
BshFI GGCC 4 cut(s) 238, 332, 495, 681
BshNI GGYRCC 1 cut(s) 638
BsiEI CGRYCG 2 cut(s) 333, 1083
BsiHKCI CYCGRG 1 cut(s) 994
BslFI GGGAC 1 cut(s) 511
BslI CCNNNNNNNGG 1 cut(s) 234
BsmAI GTCTC 3 cut(s) 286, 592, 1217
BsmFI GGGAC 1 cut(s) 511
BsmI GAATGC 1 cut(s) 335
BsnI GGCC 4 cut(s) 238, 332, 495, 681
Bso31I GGTCTC 1 cut(s) 1217
BsoBI CYCGRG 1 cut(s) 994
Bsp119I TTCGAA 1 cut(s) 1244
Bsp1286I GDGCHC 1 cut(s) 1001
Bsp143I GATC 6 cut(s) 162, 184, 570, 1192, 1276, 1335
Bsp1720I GCTNAGC 1 cut(s) 464
BspACI CCGC 3 cut(s) 117, 333, 556
BspANI GGCC 4 cut(s) 238, 332, 495, 681
BspCNI CTCAG 6 cut(s) 477, 984, 1113, 1209, 1212, 1241
BspLI GGNNCC 5 cut(s) 301, 640, 712, 784, 1094
BspMAI CTGCAG 2 cut(s) 885, 1053
BspMI ACCTGC 1 cut(s) 28
BspPI GGATC 3 cut(s) 565, 1200, 1343
BspT104I TTCGAA 1 cut(s) 1244
BspT107I GGYRCC 1 cut(s) 638
BspTNI GGTCTC 1 cut(s) 1217
BsrFI RCCGGY 2 cut(s) 491, 1067
BsrI ACTGG 1 cut(s) 741
BssAI RCCGGY 2 cut(s) 491, 1067
BssECI CCNNGG 3 cut(s) 191, 676, 1207
BssMI GATC 6 cut(s) 162, 184, 570, 1192, 1276, 1335
BssNI GRCGYC 1 cut(s) 798
BssT1I CCWWGG 1 cut(s) 676
Bst2UI CCWGG 3 cut(s) 193, 235, 1209
Bst4CI ACNGT 1 cut(s) 1241
Bst6I CTCTTC 4 cut(s) 86, 161, 654, 1329
BstACI GRCGYC 1 cut(s) 798
BstAPI GCANNNNNTGC 1 cut(s) 889
BstBI TTCGAA 1 cut(s) 1244
BstC8I GCNNGC 2 cut(s) 890, 978
BstDEI CTNAG 9 cut(s) 464, 665, 833, 971, 1034, 1121, 1196, 1220, 1228
BstF5I GGATG 4 cut(s) 437, 642, 714, 786
BstH2I RGCGCY 1 cut(s) 117
BstHHI GCGC 1 cut(s) 116
BstKTI GATC 6 cut(s) 165, 187, 573, 1195, 1279, 1338
BstMAI GTCTC 3 cut(s) 286, 592, 1217
BstMBI GATC 6 cut(s) 162, 184, 570, 1192, 1276, 1335
BstMCI CGRYCG 2 cut(s) 333, 1083
BstMWI GCNNNNNNNGC 3 cut(s) 889, 996, 1292
BstNI CCWGG 3 cut(s) 193, 235, 1209
BstNSI RCATGY 2 cut(s) 631, 1135
BstSCI CCNGG 8 cut(s) 191, 233, 238, 284, 480, 1005, 1077, 1207
BstSFI CTRYAG 2 cut(s) 881, 1049
BstSLI GKGCMC 1 cut(s) 1001
BstV1I GCAGC 4 cut(s) 472, 732, 867, 1035
BstX2I RGATCY 2 cut(s) 1192, 1335
BstYI RGATCY 2 cut(s) 1192, 1335
BstZI CGGCCG 1 cut(s) 330
BsuRI GGCC 4 cut(s) 238, 332, 495, 681
BtsCI GGATG 4 cut(s) 437, 642, 714, 786
BtsI GCAGTG 1 cut(s) 1279
BtsIMutI CAGTG 2 cut(s) 1204, 1279
BveI ACCTGC 1 cut(s) 28
Cac8I GCNNGC 2 cut(s) 890, 978
CfoI GCGC 1 cut(s) 116
Cfr10I RCCGGY 2 cut(s) 491, 1067
Cfr13I GGNCC 4 cut(s) 237, 474, 494, 566
CpoI CGGWCCG 1 cut(s) 566
CseI GACGC 1 cut(s) 787
CspI CGGWCCG 1 cut(s) 566
CviAII CATG 8 cut(s) 130, 166, 175, 278, 628, 826, 1114, 1132
DdeI CTNAG 9 cut(s) 464, 665, 833, 971, 1034, 1121, 1196, 1220, 1228
DpnI GATC 6 cut(s) 164, 186, 572, 1194, 1278, 1337
DpnII GATC 6 cut(s) 162, 184, 570, 1192, 1276, 1335
DraIII CACNNNGTG 1 cut(s) 42
EaeI YGGCCR 1 cut(s) 330
EagI CGGCCG 1 cut(s) 330
Eam1104I CTCTTC 4 cut(s) 86, 161, 654, 1329
EarI CTCTTC 4 cut(s) 86, 161, 654, 1329
EclXI CGGCCG 1 cut(s) 330
Eco130I CCWWGG 1 cut(s) 676
Eco147I AGGCCT 1 cut(s) 681
Eco31I GGTCTC 1 cut(s) 1217
Eco47I GGWCC 2 cut(s) 474, 566
Eco52I CGGCCG 1 cut(s) 330
Eco57I CTGAAG 2 cut(s) 635, 745
Eco88I CYCGRG 1 cut(s) 994
EcoRI GAATTC 1 cut(s) 1309
EcoRII CCWGG 3 cut(s) 191, 233, 1207
EcoT14I CCWWGG 1 cut(s) 676
ErhI CCWWGG 1 cut(s) 676
FaeI CATG 8 cut(s) 133, 169, 178, 281, 631, 829, 1117, 1135
FaiI YATR 8 cut(s) 131, 167, 176, 279, 629, 827, 1115, 1133
FalI AAGNNNNNCTT 2 cut(s) 1308, 1340
FaqI GGGAC 1 cut(s) 511
FatI CATG 8 cut(s) 129, 165, 174, 277, 627, 825, 1113, 1131
FbaI TGATCA 2 cut(s) 184, 1276
Fnu4HI GCNGC 7 cut(s) 5, 117, 333, 461, 746, 881, 1049
FokI GGATG 4 cut(s) 424, 629, 701, 773
Fsp4HI GCNGC 7 cut(s) 5, 117, 333, 461, 746, 881, 1049
FspBI CTAG 1 cut(s) 290
GlaI GCGC 1 cut(s) 115
GluI GCNGC 7 cut(s) 5, 117, 333, 461, 746, 881, 1049
GsaI CCCAGC 2 cut(s) 659, 1024
GsuI CTGGAG 3 cut(s) 214, 440, 578
HaeII RGCGCY 1 cut(s) 117
HaeIII GGCC 4 cut(s) 238, 332, 495, 681
HgaI GACGC 1 cut(s) 787
HhaI GCGC 1 cut(s) 116
Hin1I GRCGYC 1 cut(s) 798
Hin1II CATG 8 cut(s) 133, 169, 178, 281, 631, 829, 1117, 1135
Hin6I GCGC 1 cut(s) 114
HinP1I GCGC 1 cut(s) 114
HincII GTYRAC 2 cut(s) 734, 757
HindII GTYRAC 2 cut(s) 734, 757
HindIII AAGCTT 1 cut(s) 222
HinfI GANTC 7 cut(s) 143, 170, 243, 983, 1010, 1030, 1117
HphI GGTGA 7 cut(s) 4, 197, 388, 481, 580, 967, 1281
Hpy166II GTNNAC 3 cut(s) 633, 734, 757
Hpy188III TCNNGA 4 cut(s) 160, 595, 1027, 1171
Hpy8I GTNNAC 3 cut(s) 633, 734, 757
Hpy99I CGWCG 1 cut(s) 803
HpyAV CCTTC 6 cut(s) 56, 61, 95, 114, 351, 1024
HpyCH4III ACNGT 1 cut(s) 1241
HpyCH4IV ACGT 1 cut(s) 542
HpyF10VI GCNNNNNNNGC 3 cut(s) 889, 996, 1292
HpyF3I CTNAG 9 cut(s) 464, 665, 833, 971, 1034, 1121, 1196, 1220, 1228
HpySE526I ACGT 1 cut(s) 542
Hsp92I GRCGYC 1 cut(s) 798
Hsp92II CATG 8 cut(s) 133, 169, 178, 281, 631, 829, 1117, 1135
HspAI GCGC 1 cut(s) 114
Ksp22I TGATCA 2 cut(s) 184, 1276
Kzo9I GATC 6 cut(s) 162, 184, 570, 1192, 1276, 1335
LmnI GCTCC 7 cut(s) 28, 305, 716, 770, 788, 1092, 1324
Lsp1109I GCAGC 4 cut(s) 472, 732, 867, 1035
LweI GCATC 3 cut(s) 446, 1386, 1396
MaeI CTAG 1 cut(s) 290
MaeII ACGT 1 cut(s) 542
MaeIII GTNAC 1 cut(s) 546
MalI GATC 6 cut(s) 164, 186, 572, 1194, 1278, 1337
MboI GATC 6 cut(s) 162, 184, 570, 1192, 1276, 1335
MboII GAAGA 9 cut(s) 68, 73, 148, 343, 373, 376, 641, 1316, 1318
MfeI CAATTG 1 cut(s) 726
MflI RGATCY 2 cut(s) 1192, 1335
MhlI GDGCHC 1 cut(s) 1001
MluCI AATT 8 cut(s) 198, 498, 510, 697, 726, 857, 950, 1309
MmeI TCCRAC 2 cut(s) 501, 1231
MseI TTAA 3 cut(s) 848, 1064, 1257
MspA1I CMGCKG 1 cut(s) 655
MspR9I CCNGG 8 cut(s) 193, 235, 240, 286, 482, 1007, 1079, 1209
MunI CAATTG 1 cut(s) 726
Mva1269I GAATGC 1 cut(s) 335
MvaI CCWGG 3 cut(s) 193, 235, 1209
MwoI GCNNNNNNNGC 3 cut(s) 889, 996, 1292
NciI CCSGG 5 cut(s) 240, 286, 482, 1007, 1079
NdeII GATC 6 cut(s) 162, 184, 570, 1192, 1276, 1335
NlaIII CATG 8 cut(s) 133, 169, 178, 281, 631, 829, 1117, 1135
NlaIV GGNNCC 5 cut(s) 301, 640, 712, 784, 1094
NmuCI GTSAC 1 cut(s) 546
NspI RCATGY 2 cut(s) 631, 1135
NspV TTCGAA 1 cut(s) 1244
PceI AGGCCT 1 cut(s) 681
PciI ACATGT 2 cut(s) 627, 1131
PctI GAATGC 1 cut(s) 335
PfeI GAWTC 7 cut(s) 143, 170, 243, 983, 1010, 1030, 1117
PfoI TCCNGGA 1 cut(s) 1005
PkrI GCNGC 7 cut(s) 6, 118, 334, 462, 747, 882, 1050
PscI ACATGT 2 cut(s) 627, 1131
Psp6I CCWGG 3 cut(s) 191, 233, 1207
PspFI CCCAGC 2 cut(s) 655, 1020
PspGI CCWGG 3 cut(s) 191, 233, 1207
PspN4I GGNNCC 5 cut(s) 301, 640, 712, 784, 1094
PspPI GGNCC 4 cut(s) 237, 474, 494, 566
PstI CTGCAG 2 cut(s) 885, 1053
PsuI RGATCY 2 cut(s) 1192, 1335
PvuII CAGCTG 1 cut(s) 655
Rsr2I CGGWCCG 1 cut(s) 566
RsrII CGGWCCG 1 cut(s) 566
SaqAI TTAA 3 cut(s) 848, 1064, 1257
SatI GCNGC 7 cut(s) 5, 117, 333, 461, 746, 881, 1049
Sau3AI GATC 6 cut(s) 162, 184, 570, 1192, 1276, 1335
Sau96I GGNCC 4 cut(s) 237, 474, 494, 566
ScrFI CCNGG 8 cut(s) 193, 235, 240, 286, 482, 1007, 1079, 1209
SduI GDGCHC 1 cut(s) 1001
SfaNI GCATC 3 cut(s) 446, 1386, 1396
SfcI CTRYAG 2 cut(s) 881, 1049
SfuI TTCGAA 1 cut(s) 1244
SinI GGWCC 2 cut(s) 474, 566
SmlI CTYRAG 4 cut(s) 521, 1025, 1169, 1314
SmoI CTYRAG 4 cut(s) 521, 1025, 1169, 1314
Sse9I AATT 8 cut(s) 198, 498, 510, 697, 726, 857, 950, 1309
SseBI AGGCCT 1 cut(s) 681
SsiI CCGC 3 cut(s) 117, 333, 556
SspMI CTAG 1 cut(s) 290
StuI AGGCCT 1 cut(s) 681
StyD4I CCNGG 8 cut(s) 191, 233, 238, 284, 480, 1005, 1077, 1207
StyI CCWWGG 1 cut(s) 676
TaaI ACNGT 1 cut(s) 1241
TaiI ACGT 1 cut(s) 545
TaqI TCGA 4 cut(s) 246, 801, 1244, 1304
TasI AATT 8 cut(s) 198, 498, 510, 697, 726, 857, 950, 1309
TauI GCSGC 2 cut(s) 119, 335
TfiI GAWTC 7 cut(s) 143, 170, 243, 983, 1010, 1030, 1117
Tru1I TTAA 3 cut(s) 848, 1064, 1257
Tru9I TTAA 3 cut(s) 848, 1064, 1257
TscAI CASTG 2 cut(s) 1204, 1279
TseFI GTSAC 1 cut(s) 546
TseI GCWGC 5 cut(s) 4, 460, 745, 880, 1048
Tsp45I GTSAC 1 cut(s) 546
TspDTI ATGAA 3 cut(s) 814, 889, 1130
TspGWI ACGGA 1 cut(s) 882
TspRI CASTG 2 cut(s) 1204, 1279
VpaK11BI GGWCC 2 cut(s) 474, 566
XapI RAATTY 3 cut(s) 198, 510, 1309
XceI RCATGY 2 cut(s) 631, 1135
XspI CTAG 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.