Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0010986

Physical Location & Seq

Genomic Coordinates Forward (+)

18809442 .. 18811369

Gene Structure 1928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G169100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1407 bp

ATGCACTGTTCCTTCTCACTCTCTCTCCCTCTAATTCTACTTCTCCTCTCACTCCCTTCTTCTATTCCTTCTGCCTCCACCACCAATTCCCACCATGCAAATAAACAACCACCCATCAACGCCCCCAAGCCCATCAACACTATAGCTCCATCTGAAGCAGAAGCTCTGTTCAAGATCATGGACTCCATGTCCTCTGATCAAAACTGGAGAATTTCCCATCCTAACCCTTGTCAGCCAGGCTCATCCTGGCCTGGAATTGAGTGCAAAGTAGGAAAAGACAACTACCTACACGTCTCCAGGCTTGACTTTGGCACCCCACCAAATCCAACTTGCAAAAAAACAGCTACATTTCCTTCACAAATCTTTGCTCTCCCATATCTTCAATCTGTGTTCTTCTTCAATTGTTTCACTCACACCAAAACCACTCTTACTGTTCCACAAAACAGAGCCTCCCCTGCTTCACTTCAACAGCTCAGTCTCCGATCTAACCCAGCACTCGTTGGCCCAATCCCACCTCAAATTTCAACACTCAAGTCCCTTGAAATCCTCACGTTGTCACAAAACCGCCTCACTGGCCCAATTCCATTGGAGATTTTCAGCTTGGGCAGTTTGGTACACCTTGACTTGAGCTACAATATGCTCACAGGCACTATCCCATACCAGCTGGGCAGTCTCAGAAACCTTCAAGGCCTTGATTTGAGCTACAATATGCTTACAGGGGCCATCCCAAACACAATTGGCCAACTGGGTTTGCTTCAAAAATTTGACTTCAGCTCAAATTCACTTACTGGGGGCATTCCTGATGGCATTGAGAAGCTCAGTTTATTGGTTTTCATGGCTCTGAGCAACAACAAATTGGGTGGGCAATTTCCAAAAGGTCTGGAAAAATTGCAAAGCTTGCAGTATTTCATTTTGGATGGCAACCCAATTCATTCACCTCTGCCACTAGAGTTTGGTAAGTTGGTGAAACTTCAAGAACTCAGGCTTGCTGATTCTGGGTACTCTGGCACAATACCAGAAAGCTTTTCACAGCTTAAGAATTTAAGCACTTTGTCGTTGCAGAACAACCGTTTAATGGGTGAAATTCCGGTTGGTTTTGGCAGTCTCTCACATATATACCACATGAATCTGAGCAGAAATATGTTGGGGGGTGTTGTGCCTTTCAACTCAAGTTTCTTGAAGAGGTTGGGAAGAAATTTGGATCTTAGTGGAAACCCAGGTCTTTGTTTGAGTCCCTCTGAGGCACACAGTTCGAAAATTGGAGTTAATGTTTGTGGAAAGAATAACAATGCGTCTTCTATCCAGCCCTGGAAGAAATCTCAAGCTCCATCTGGGCTCTCCAAGCCATTGTTCCTATTTACTGCTTTATGTGTTTGGGGATTGCATCAAATGTTGTTTCTGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0001101 GO:0002682 GO:0002831 GO:0003002 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0006952 GO:0007275 GO:0007389 GO:0008150 GO:0008356 GO:0009505 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009888 GO:0009987 GO:0010016 GO:0010026 GO:0010033 GO:0010090 GO:0010103 GO:0010374 GO:0010375 GO:0010376 GO:0016020 GO:0016043 GO:0030154 GO:0030312 GO:0031224 GO:0031225 GO:0031347 GO:0032101 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033218 GO:0033612 GO:0033993 GO:0042221 GO:0042277 GO:0043207 GO:0043900 GO:0044425 GO:0044464 GO:0045088 GO:0048367 GO:0048468 GO:0048583 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0050776 GO:0050789 GO:0050832 GO:0050896 GO:0051301 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071840 GO:0071944 GO:0080134 GO:0090558 GO:0090626 GO:0090698 GO:0097305 GO:0097306 GO:0098542 GO:1900150 GO:1901700 GO:1901701 GO:1905034

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8

Protein Analysis

469

Amino Acids

50.86

Weight (kDa)

9.26

Isoelectric Point (pI)

46.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42800
fragaria_vesca	FvH4_6g37770
malus_domestica	MD09G1156200.v1.1 MD17G1142500.v1.1
prunus_persica	Prupe.3G169100_v2.0.a1 Prupe.3G169100_v2.0.a1
pyrus_communis	pycom09g07500 pycom17g13570
rosa_chinensis	RchiOBHm_Chr2g0150831
rosa_laevigata	RLG00000020510
rosa_multiflora	Rmu_sc0003127.1_g000061 Rmu_sc0007617.1_g000016 Rmu_sc0024470.1_g000003
rosa_roxburghii	Rroxscaffold_2G00096930
rosa_rugosa	Rorug02G0422600
rosa_samantha	Rh2AG482900 Rh2BG495500 Rh2CG469200 Rh2DG506300
rosa_wichuraiana	Rw2G039580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	311
AciI	CCGC	1 cut(s)	565
AclWI	GGATC	1 cut(s)	1209
AcoI	YGGCCR	1 cut(s)	739
AcsI	RAATTY	7 cut(s)	210, 519, 761, 778, 1039, 1083, 1195
AcuI	CTGAAG	2 cut(s)	174, 754
AfaI	GTAC	2 cut(s)	615, 1001
AfiI	CCNNNNNNNGG	1 cut(s)	1075
AflII	CTTAAG	1 cut(s)	1034
AflIII	ACRYGT	1 cut(s)	289
AhdI	GACNNNNNGTC	1 cut(s)	187
AjiI	CACGTC	1 cut(s)	292
AjnI	CCWGG	6 cut(s)	235, 245, 250, 296, 1216, 1307
AjuI	GAANNNNNNNTTGG	4 cut(s)	1074, 1106, 1334, 1366
Alw26I	GTCTC	4 cut(s)	298, 482, 677, 1109
AlwI	GGATC	1 cut(s)	1209
AoxI	GGCC	6 cut(s)	248, 502, 574, 688, 720, 739
ApoI	RAATTY	7 cut(s)	210, 519, 761, 778, 1039, 1083, 1195
AspS9I	GGNCC	3 cut(s)	503, 575, 720
AsuHPI	GGTGA	3 cut(s)	927, 976, 1091
AsuII	TTCGAA	1 cut(s)	1253
BalI	TGGCCA	1 cut(s)	741
BanI	GGYRCC	1 cut(s)	311
BanII	GRGCYC	1 cut(s)	1338
BbsI	GAAGAC	1 cut(s)	1287
BccI	CCATC	8 cut(s)	122, 140, 157, 225, 731, 797, 911, 1336
BcgI	CGANNNNNNTGC	2 cut(s)	1233, 1267
BciT130I	CCWGG	6 cut(s)	237, 247, 252, 298, 1218, 1309
BclI	TGATCA	1 cut(s)	196
BcoDI	GTCTC	4 cut(s)	298, 482, 677, 1109
BfaI	CTAG	1 cut(s)	947
BfmI	CTRYAG	1 cut(s)	141
BfrI	CTTAAG	1 cut(s)	1034
BglI	GCCNNNNNGGC	1 cut(s)	573
Bme1390I	CCNGG	6 cut(s)	237, 247, 252, 298, 1218, 1309
BmeRI	GACNNNNNGTC	1 cut(s)	187
BmgBI	CACGTC	1 cut(s)	292
BmgT120I	GGNCC	3 cut(s)	503, 575, 720
BmiI	GGNNCC	2 cut(s)	313, 721
BmrFI	CCNGG	6 cut(s)	237, 247, 252, 298, 1218, 1309
BmrI	ACTGGG	2 cut(s)	755, 798
BmsI	GCATC	1 cut(s)	1393
BmuI	ACTGGG	2 cut(s)	755, 798
BpiI	GAAGAC	1 cut(s)	1287
BpmI	CTGGAG	2 cut(s)	226, 280
Bpu14I	TTCGAA	1 cut(s)	1253
BpuEI	CTTGAG	4 cut(s)	515, 646, 1153, 1305
BsaJI	CCNNGG	2 cut(s)	1216, 1307
BsaWI	WCCGGW	1 cut(s)	1087
BsaXI	ACNNNNNCTCC	8 cut(s)	9, 39, 130, 160, 434, 464, 1254, 1284
Bsc4I	CCNNNNNNNGG	1 cut(s)	1075
Bse1I	ACTGG	4 cut(s)	209, 577, 750, 793
BseBI	CCWGG	6 cut(s)	237, 247, 252, 298, 1218, 1309
BseDI	CCNNGG	2 cut(s)	1216, 1307
BseGI	GGATG	4 cut(s)	217, 242, 723, 922
BseLI	CCNNNNNNNGG	1 cut(s)	1075
BseMII	CTCAG	7 cut(s)	487, 688, 832, 833, 994, 1121, 1230
BseNI	ACTGG	4 cut(s)	209, 577, 750, 793
BseRI	GAGGAG	1 cut(s)	35
BseYI	CCCAGC	2 cut(s)	490, 664
BshFI	GGCC	6 cut(s)	250, 504, 576, 690, 722, 741
BshNI	GGYRCC	1 cut(s)	311
BsiSI	CCGG	1 cut(s)	1088
BslFI	GGGAC	2 cut(s)	520, 1218
BslI	CCNNNNNNNGG	1 cut(s)	1075
BsmAI	GTCTC	4 cut(s)	298, 482, 677, 1109
BsmBI	CGTCTC	1 cut(s)	298
BsmFI	GGGAC	2 cut(s)	520, 1218
BsmI	GAATGC	1 cut(s)	795
BsnI	GGCC	6 cut(s)	250, 504, 576, 690, 722, 741
Bsp119I	TTCGAA	1 cut(s)	1253
Bsp1286I	GDGCHC	1 cut(s)	1338
Bsp143I	GATC	4 cut(s)	174, 196, 482, 1201
BspACI	CCGC	1 cut(s)	565
BspANI	GGCC	6 cut(s)	250, 504, 576, 690, 722, 741
BspCNI	CTCAG	7 cut(s)	486, 687, 831, 834, 993, 1122, 1231
BspLI	GGNNCC	2 cut(s)	313, 721
BspPI	GGATC	1 cut(s)	1209
BspT104I	TTCGAA	1 cut(s)	1253
BspT107I	GGYRCC	1 cut(s)	311
BspTI	CTTAAG	1 cut(s)	1034
BsrI	ACTGG	4 cut(s)	209, 577, 750, 793
BssECI	CCNNGG	2 cut(s)	1216, 1307
BssMI	GATC	4 cut(s)	174, 196, 482, 1201
Bst2UI	CCWGG	6 cut(s)	237, 247, 252, 298, 1218, 1309
Bst4CI	ACNGT	4 cut(s)	8, 433, 1070, 1250
Bst6I	CTCTTC	1 cut(s)	1175
BstAFI	CTTAAG	1 cut(s)	1034
BstAPI	GCANNNNNTGC	1 cut(s)	898
BstBI	TTCGAA	1 cut(s)	1253
BstC8I	GCNNGC	2 cut(s)	899, 987
BstDEI	CTNAG	8 cut(s)	473, 674, 818, 842, 980, 1130, 1205, 1239
BstF5I	GGATG	4 cut(s)	217, 242, 723, 922
BstKTI	GATC	4 cut(s)	177, 199, 485, 1204
BstMAI	GTCTC	4 cut(s)	298, 482, 677, 1109
BstMBI	GATC	4 cut(s)	174, 196, 482, 1201
BstMWI	GCNNNNNNNGC	4 cut(s)	455, 573, 898, 1342
BstNI	CCWGG	6 cut(s)	237, 247, 252, 298, 1218, 1309
BstSCI	CCNGG	6 cut(s)	235, 245, 250, 296, 1216, 1307
BstSFI	CTRYAG	1 cut(s)	141
BstV2I	GAAGAC	1 cut(s)	1287
BstX2I	RGATCY	1 cut(s)	1201
BstYI	RGATCY	1 cut(s)	1201
BsuRI	GGCC	6 cut(s)	250, 504, 576, 690, 722, 741
BtrI	CACGTC	1 cut(s)	292
BtsCI	GGATG	4 cut(s)	217, 242, 723, 922
BtsIMutI	CAGTG	2 cut(s)	4, 570
Cac8I	GCNNGC	2 cut(s)	899, 987
Cfr13I	GGNCC	3 cut(s)	503, 575, 720
CseI	GACGC	1 cut(s)	1281
Csp6I	GTAC	2 cut(s)	614, 1000
CspCI	CAANNNNNGTGG	2 cut(s)	841, 876
CviAII	CATG	5 cut(s)	95, 178, 187, 835, 1123
CviQI	GTAC	2 cut(s)	614, 1000
DdeI	CTNAG	8 cut(s)	473, 674, 818, 842, 980, 1130, 1205, 1239
DpnI	GATC	4 cut(s)	176, 198, 484, 1203
DpnII	GATC	4 cut(s)	174, 196, 482, 1201
DriI	GACNNNNNGTC	1 cut(s)	187
EaeI	YGGCCR	1 cut(s)	739
Eam1104I	CTCTTC	1 cut(s)	1175
Eam1105I	GACNNNNNGTC	1 cut(s)	187
EarI	CTCTTC	1 cut(s)	1175
Eco147I	AGGCCT	1 cut(s)	690
Eco24I	GRGCYC	1 cut(s)	1338
Eco57I	CTGAAG	2 cut(s)	174, 754
EcoRII	CCWGG	6 cut(s)	235, 245, 250, 296, 1216, 1307
EcoT38I	GRGCYC	1 cut(s)	1338
Esp3I	CGTCTC	1 cut(s)	298
FaeI	CATG	5 cut(s)	98, 181, 190, 838, 1126
FaqI	GGGAC	2 cut(s)	520, 1218
FatI	CATG	5 cut(s)	94, 177, 186, 834, 1122
FbaI	TGATCA	1 cut(s)	196
FokI	GGATG	4 cut(s)	204, 229, 710, 929
FriOI	GRGCYC	1 cut(s)	1338
FspBI	CTAG	1 cut(s)	947
GsaI	CCCAGC	2 cut(s)	494, 668
GsuI	CTGGAG	2 cut(s)	226, 280
HaeIII	GGCC	6 cut(s)	250, 504, 576, 690, 722, 741
HapII	CCGG	1 cut(s)	1088
HgaI	GACGC	1 cut(s)	1281
Hin1II	CATG	5 cut(s)	98, 181, 190, 838, 1126
HindIII	AAGCTT	2 cut(s)	895, 1021
HinfI	GANTC	4 cut(s)	182, 992, 1126, 1231
HpaII	CCGG	1 cut(s)	1088
HphI	GGTGA	3 cut(s)	927, 976, 1091
Hpy166II	GTNNAC	1 cut(s)	616
Hpy188I	TCNGA	7 cut(s)	154, 196, 482, 677, 843, 1131, 1240
Hpy188III	TCNNGA	5 cut(s)	172, 800, 881, 974, 1177
Hpy8I	GTNNAC	1 cut(s)	616
HpyAV	CCTTC	5 cut(s)	22, 66, 78, 363, 692
HpyCH4III	ACNGT	4 cut(s)	8, 433, 1070, 1250
HpyCH4IV	ACGT	2 cut(s)	291, 551
HpyCH4V	TGCA	8 cut(s)	4, 98, 264, 333, 892, 901, 1060, 1384
HpyF10VI	GCNNNNNNNGC	4 cut(s)	455, 573, 898, 1342
HpyF3I	CTNAG	8 cut(s)	473, 674, 818, 842, 980, 1130, 1205, 1239
HpySE526I	ACGT	2 cut(s)	291, 551
Hsp92II	CATG	5 cut(s)	98, 181, 190, 838, 1126
Ksp22I	TGATCA	1 cut(s)	196
Kzo9I	GATC	4 cut(s)	174, 196, 482, 1201
LmnI	GCTCC	2 cut(s)	151, 1330
LweI	GCATC	1 cut(s)	1393
MaeI	CTAG	1 cut(s)	947
MaeII	ACGT	2 cut(s)	291, 551
MaeIII	GTNAC	1 cut(s)	555
MalI	GATC	4 cut(s)	176, 198, 484, 1203
MboI	GATC	4 cut(s)	174, 196, 482, 1201
MboII	GAAGA	8 cut(s)	51, 371, 385, 388, 1192, 1203, 1287, 1324
MfeI	CAATTG	2 cut(s)	400, 735
MflI	RGATCY	1 cut(s)	1201
MhlI	GDGCHC	1 cut(s)	1338
MlsI	TGGCCA	1 cut(s)	741
MluNI	TGGCCA	1 cut(s)	741
MlyI	GAGTC	2 cut(s)	176, 1240
MmeI	TCCRAC	1 cut(s)	350
Mox20I	TGGCCA	1 cut(s)	741
MscI	TGGCCA	1 cut(s)	741
MseI	TTAA	4 cut(s)	1035, 1043, 1073, 1266
Msp20I	TGGCCA	1 cut(s)	741
MspA1I	CMGCKG	1 cut(s)	664
MspCI	CTTAAG	1 cut(s)	1034
MspI	CCGG	1 cut(s)	1088
MspR9I	CCNGG	6 cut(s)	237, 247, 252, 298, 1218, 1309
MunI	CAATTG	2 cut(s)	400, 735
Mva1269I	GAATGC	1 cut(s)	795
MvaI	CCWGG	6 cut(s)	237, 247, 252, 298, 1218, 1309
MwoI	GCNNNNNNNGC	4 cut(s)	455, 573, 898, 1342
NdeII	GATC	4 cut(s)	174, 196, 482, 1201
NlaIII	CATG	5 cut(s)	98, 181, 190, 838, 1126
NlaIV	GGNNCC	2 cut(s)	313, 721
NmuCI	GTSAC	1 cut(s)	555
NspV	TTCGAA	1 cut(s)	1253
PceI	AGGCCT	1 cut(s)	690
PctI	GAATGC	1 cut(s)	795
PfeI	GAWTC	2 cut(s)	992, 1126
PleI	GAGTC	2 cut(s)	176, 1239
PpsI	GAGTC	2 cut(s)	176, 1239
Psp6I	CCWGG	6 cut(s)	235, 245, 250, 296, 1216, 1307
PspFI	CCCAGC	2 cut(s)	490, 664
PspGI	CCWGG	6 cut(s)	235, 245, 250, 296, 1216, 1307
PspN4I	GGNNCC	2 cut(s)	313, 721
PspPI	GGNCC	3 cut(s)	503, 575, 720
PsuI	RGATCY	1 cut(s)	1201
PvuII	CAGCTG	1 cut(s)	664
RsaI	GTAC	2 cut(s)	615, 1001
RsaNI	GTAC	2 cut(s)	614, 1000
SaqAI	TTAA	4 cut(s)	1035, 1043, 1073, 1266
Sau3AI	GATC	4 cut(s)	174, 196, 482, 1201
Sau96I	GGNCC	3 cut(s)	503, 575, 720
SchI	GAGTC	2 cut(s)	176, 1240
ScrFI	CCNGG	6 cut(s)	237, 247, 252, 298, 1218, 1309
SduI	GDGCHC	1 cut(s)	1338
SfaNI	GCATC	1 cut(s)	1393
SfcI	CTRYAG	1 cut(s)	141
SfuI	TTCGAA	1 cut(s)	1253
SmlI	CTYRAG	5 cut(s)	530, 625, 1034, 1168, 1320
SmoI	CTYRAG	5 cut(s)	530, 625, 1034, 1168, 1320
SseBI	AGGCCT	1 cut(s)	690
SsiI	CCGC	1 cut(s)	565
SspMI	CTAG	1 cut(s)	947
StuI	AGGCCT	1 cut(s)	690
StyD4I	CCNGG	6 cut(s)	235, 245, 250, 296, 1216, 1307
TaaI	ACNGT	4 cut(s)	8, 433, 1070, 1250
TaiI	ACGT	2 cut(s)	294, 554
TaqI	TCGA	1 cut(s)	1253
TfiI	GAWTC	2 cut(s)	992, 1126
Tru1I	TTAA	4 cut(s)	1035, 1043, 1073, 1266
Tru9I	TTAA	4 cut(s)	1035, 1043, 1073, 1266
TscAI	CASTG	1 cut(s)	577
TseFI	GTSAC	1 cut(s)	555
Tsp45I	GTSAC	1 cut(s)	555
TspDTI	ATGAA	4 cut(s)	823, 898, 920, 1139
TspRI	CASTG	1 cut(s)	577
Vha464I	CTTAAG	1 cut(s)	1034
XapI	RAATTY	7 cut(s)	210, 519, 761, 778, 1039, 1083, 1195
XcmI	CCANNNNNNNNNTGG	1 cut(s)	243
XspI	CTAG	1 cut(s)	947

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.