Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0010986

Physical Location & Seq

Genomic Coordinates Reverse (-)

29734204 .. 29735625

Gene Structure 1422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g37770.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1422 bp

ATGCTGCAACAGACCAAGCCTCCATACCTTGACACAATGTACTGTTCCTTCTCAAACTCCTTCCCTCTAGTTCTGCTTCTTCTGATCCTCCCACTCTCTTCTTCTATTCCTTCTGTCTCATACTCAAATGCACATCATTCTACCAACACCATCAATATGGTTCCATCTGAAGCAGAAACTCTGTTCACCATCATGGAGTCCATGTCCTCTGATCATACCTGGAGAGTCTCGTTTTCCCAACCATGTCAACCAGGCTCAACATGGCCCGGAATCGAGTGCAAACTAGGAACAGACAACCACCTACATGTCTCAAGGCTTGACTTTGGCAATCATCCGTATCCAAGTTGCAAGAGAACAGCTACATTTCCTTCACAAATTTCTGCCCTTCCACATCTTCAATCTGTGTTCTTCTTCAACTGCTTCACTCACACTAAGACCAGCTTCTCTGTTTCAAGAGCCTCCAATGCTTCTTCACTTGAACAGCTCAGTCTCCGATCGAATCCGGCACTAGTTGGTCCAATCCCACCTCAGATTTCATCTCTCAAGTCCCTTGAAATCCTTACATTGTCTCAAAACCGCCTCACCGGAAAAATCCCACTGGAGATTTTCAGGTTGAGCAGCTTAGTACACCTTGATTTGAGCTACAATATGCTGACAGGTAGTATTCCAGTCCAACTAGGCAGTCTCAGAAACCTTCAAGGCCTTGATTTGAGCTACAATATGCTCACTGGGTCGATCCCAAACACAATAGGGGAACTGGGGCTGCTTCAGAAAGTTGACTTCAGCTCAAATTTGCTCACTGGGGGCATTCCTGATGGAATTGAGAAGCTCACTTTATTGAACTTCCTGGCTTTGAGCAACAACAAATTGCATGGACCATTCCCAAAAGGTTTGGAGAAACTGCAAAGTTTGCAGTACTTAATTTTAGATGCTAATCCAATGAACACAACTCTGCCATTGGACCTTGGTAAGTTGGTGAAACTTCAAGAACTCAGGCTTGCTGATTCTGGCTACTCAGGCACTATACCAGAAAGCTTCTCACAGCTCAAGAACTTGAGCACTTTGTCATTGCAGAACAACCGTCTAACCGGTGAAATTCCTCTTAGATTTGGCAGTCTCTCACGCATTTACCACTTGAATCTTAGTAGGAACATGCTGAGTGGTGTTGTGCCTTTCAATTCAAGTTTCTTAAGTAGGCTGGGAAGGAACTTGGATCTTAGTGGAAACCCAAGTCTCTGTTTGAGTCCCTCTGAAGCATATAGCTTGAAGATTGGAGTTAATGTTTGTGGAACCAATAGCAATGGTTCTGCTATCCTGCCATTGAAGAACTCTCAAGCTTCATCTGGGCTCTCTAAACCATTCTTTCTCTTTACACCAGCTTTATGTGTTCTGGGATTGTATCAGATATTGTTTCTAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0001101 GO:0002682 GO:0002831 GO:0003002 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0006952 GO:0007275 GO:0007389 GO:0008150 GO:0008356 GO:0009505 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009888 GO:0009987 GO:0010016 GO:0010026 GO:0010033 GO:0010090 GO:0010103 GO:0010374 GO:0010375 GO:0010376 GO:0016020 GO:0016043 GO:0030154 GO:0030312 GO:0031224 GO:0031225 GO:0031347 GO:0032101 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033218 GO:0033612 GO:0033993 GO:0042221 GO:0042277 GO:0043207 GO:0043900 GO:0044425 GO:0044464 GO:0045088 GO:0048367 GO:0048468 GO:0048583 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0050776 GO:0050789 GO:0050832 GO:0050896 GO:0051301 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071840 GO:0071944 GO:0080134 GO:0090558 GO:0090626 GO:0090698 GO:0097305 GO:0097306 GO:0098542 GO:1900150 GO:1901700 GO:1901701 GO:1905034

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8

Protein Analysis

474

Amino Acids

51.64

Weight (kDa)

8.83

Isoelectric Point (pI)

42.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	139 - 237	6.6e-07	Leucine-rich repeat region
LRR_8	PF13855	158 - 218	1.8e-06	Leucine rich repeat
LRR_8	PF13855	183 - 242	1.9e-08	Leucine rich repeat
LRR_14	PF23598	226 - 333	1.7e-08	Leucine-rich repeat region
LRR_8	PF13855	327 - 386	3.7e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42800
fragaria_vesca	FvH4_6g37770
malus_domestica	MD09G1156200.v1.1 MD17G1142500.v1.1
prunus_persica	Prupe.3G169100_v2.0.a1 Prupe.3G169100_v2.0.a1
pyrus_communis	pycom09g07500 pycom17g13570
rosa_chinensis	RchiOBHm_Chr2g0150831
rosa_laevigata	RLG00000020510
rosa_multiflora	Rmu_sc0003127.1_g000061 Rmu_sc0007617.1_g000016 Rmu_sc0024470.1_g000003
rosa_roxburghii	Rroxscaffold_2G00096930
rosa_rugosa	Rorug02G0422600
rosa_samantha	Rh2AG482900 Rh2BG495500 Rh2CG469200 Rh2DG506300
rosa_wichuraiana	Rw2G039580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	577
AclWI	GGATC	3 cut(s)	79, 730, 1221
AcsI	RAATTY	3 cut(s)	375, 790, 1095
AcuI	CTGAAG	4 cut(s)	189, 752, 766, 1272
AfaI	GTAC	3 cut(s)	41, 627, 917
AflII	CTTAAG	1 cut(s)	1189
AflIII	ACRYGT	1 cut(s)	304
AgeI	ACCGGT	1 cut(s)	1088
AhlI	ACTAGT	1 cut(s)	508
AjnI	CCWGG	3 cut(s)	218, 250, 846
Alw21I	GWGCWC	1 cut(s)	1061
Alw26I	GTCTC	8 cut(s)	121, 232, 313, 494, 573, 689, 1121, 1238
AlwI	GGATC	3 cut(s)	79, 730, 1221
AoxI	GGCC	2 cut(s)	263, 700
ApeKI	GCWGC	3 cut(s)	4, 618, 763
ApoI	RAATTY	3 cut(s)	375, 790, 1095
AsiGI	ACCGGT	1 cut(s)	1088
AspS9I	GGNCC	4 cut(s)	264, 515, 875, 961
AsuC2I	CCSGG	1 cut(s)	267
AsuHPI	GGTGA	4 cut(s)	178, 574, 988, 1103
AvaII	GGWCC	3 cut(s)	515, 875, 961
BanII	GRGCYC	1 cut(s)	1350
BarI	GAAGNNNNNNTAC	2 cut(s)	32, 64
Bbv12I	GWGCWC	1 cut(s)	1061
BbvI	GCAGC	2 cut(s)	630, 750
BccI	CCATC	4 cut(s)	158, 172, 197, 809
BciT130I	CCWGG	3 cut(s)	220, 252, 848
BciVI	GTATCC	1 cut(s)	348
BclI	TGATCA	1 cut(s)	211
BcnI	CCSGG	1 cut(s)	267
BcoDI	GTCTC	8 cut(s)	121, 232, 313, 494, 573, 689, 1121, 1238
BcuI	ACTAGT	1 cut(s)	508
BfaI	CTAG	5 cut(s)	68, 284, 509, 677, 1415
BfrI	CTTAAG	1 cut(s)	1189
BfuI	GTATCC	1 cut(s)	348
BisI	GCNGC	3 cut(s)	5, 619, 764
BlsI	GCNGC	3 cut(s)	6, 620, 765
BmcAI	AGTACT	1 cut(s)	917
Bme1390I	CCNGG	4 cut(s)	220, 252, 267, 848
Bme18I	GGWCC	3 cut(s)	515, 875, 961
BmgT120I	GGNCC	4 cut(s)	264, 515, 875, 961
BmiI	GGNNCC	2 cut(s)	162, 1291
BmrFI	CCNGG	4 cut(s)	220, 252, 267, 848
BmrI	ACTGGG	3 cut(s)	738, 767, 810
BmsI	GCATC	1 cut(s)	919
BmuI	ACTGGG	3 cut(s)	738, 767, 810
BpmI	CTGGAG	2 cut(s)	241, 620
BpuEI	CTTGAG	5 cut(s)	295, 527, 1031, 1075, 1317
BpuMI	CCSGG	1 cut(s)	267
BsaBI	GATNNNNATC	1 cut(s)	933
BsaJI	CCNNGG	1 cut(s)	964
BsaWI	WCCGGW	2 cut(s)	584, 1088
BsaXI	ACNNNNNCTCC	5 cut(s)	34, 188, 218, 1266, 1296
Bse118I	RCCGGY	1 cut(s)	1088
Bse1I	ACTGG	5 cut(s)	603, 668, 733, 762, 805
Bse3DI	GCAATG	2 cut(s)	1067, 1306
Bse8I	GATNNNNATC	1 cut(s)	933
BseBI	CCWGG	3 cut(s)	220, 252, 848
BseDI	CCNNGG	1 cut(s)	964
BseGI	GGATG	1 cut(s)	331
BseJI	GATNNNNATC	1 cut(s)	933
BseMI	GCAATG	2 cut(s)	1067, 1306
BseMII	CTCAG	6 cut(s)	499, 542, 700, 1006, 1029, 1148
BseNI	ACTGG	5 cut(s)	603, 668, 733, 762, 805
BseXI	GCAGC	2 cut(s)	630, 750
BseYI	CCCAGC	1 cut(s)	1198
Bsh1285I	CGRYCG	1 cut(s)	497
BshFI	GGCC	2 cut(s)	265, 702
BshTI	ACCGGT	1 cut(s)	1088
BsiEI	CGRYCG	1 cut(s)	497
BsiHKAI	GWGCWC	1 cut(s)	1061
BsiSI	CCGG	4 cut(s)	267, 503, 585, 1089
BslFI	GGGAC	2 cut(s)	532, 1230
BsmAI	GTCTC	8 cut(s)	121, 232, 313, 494, 573, 689, 1121, 1238
BsmFI	GGGAC	2 cut(s)	532, 1230
BsmI	GAATGC	1 cut(s)	807
BsnI	GGCC	2 cut(s)	265, 702
Bsp1286I	GDGCHC	2 cut(s)	1061, 1350
Bsp143I	GATC	5 cut(s)	84, 211, 494, 735, 1213
BspACI	CCGC	1 cut(s)	577
BspANI	GGCC	2 cut(s)	265, 702
BspCNI	CTCAG	6 cut(s)	498, 541, 699, 1005, 1028, 1149
BspLI	GGNNCC	2 cut(s)	162, 1291
BspPI	GGATC	3 cut(s)	79, 730, 1221
BspTI	CTTAAG	1 cut(s)	1189
BsrDI	GCAATG	2 cut(s)	1067, 1306
BsrFI	RCCGGY	1 cut(s)	1088
BsrI	ACTGG	5 cut(s)	603, 668, 733, 762, 805
BssAI	RCCGGY	1 cut(s)	1088
BssECI	CCNNGG	1 cut(s)	964
BssMI	GATC	5 cut(s)	84, 211, 494, 735, 1213
BssT1I	CCWWGG	1 cut(s)	964
Bst2UI	CCWGG	3 cut(s)	220, 252, 848
Bst4CI	ACNGT	2 cut(s)	44, 1082
Bst6I	CTCTTC	1 cut(s)	103
BstAFI	CTTAAG	1 cut(s)	1189
BstAPI	GCANNNNNTGC	1 cut(s)	910
BstC8I	GCNNGC	1 cut(s)	999
BstF5I	GGATG	1 cut(s)	331
BstKTI	GATC	5 cut(s)	87, 214, 497, 738, 1216
BstMAI	GTCTC	8 cut(s)	121, 232, 313, 494, 573, 689, 1121, 1238
BstMBI	GATC	5 cut(s)	84, 211, 494, 735, 1213
BstMCI	CGRYCG	1 cut(s)	497
BstMWI	GCNNNNNNNGC	3 cut(s)	464, 910, 1017
BstNI	CCWGG	3 cut(s)	220, 252, 848
BstNSI	RCATGY	2 cut(s)	308, 1156
BstSCI	CCNGG	4 cut(s)	218, 250, 265, 846
BstV1I	GCAGC	2 cut(s)	630, 750
BstX2I	RGATCY	1 cut(s)	1213
BstXI	CCANNNNNNTGG	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	1213
BsuI	GTATCC	1 cut(s)	348
BsuRI	GGCC	2 cut(s)	265, 702
BtsCI	GGATG	1 cut(s)	331
BtsIMutI	CAGTG	3 cut(s)	596, 726, 798
Cac8I	GCNNGC	1 cut(s)	999
Cfr10I	RCCGGY	1 cut(s)	1088
Cfr13I	GGNCC	4 cut(s)	264, 515, 875, 961
Csp6I	GTAC	3 cut(s)	40, 626, 916
CspAI	ACCGGT	1 cut(s)	1088
CviAII	CATG	7 cut(s)	193, 202, 243, 261, 305, 872, 1153
CviQI	GTAC	3 cut(s)	40, 626, 916
DpnI	GATC	5 cut(s)	86, 213, 496, 737, 1215
DpnII	GATC	5 cut(s)	84, 211, 494, 735, 1213
Eam1104I	CTCTTC	1 cut(s)	103
EarI	CTCTTC	1 cut(s)	103
Eco130I	CCWWGG	1 cut(s)	964
Eco147I	AGGCCT	1 cut(s)	702
Eco24I	GRGCYC	1 cut(s)	1350
Eco47I	GGWCC	3 cut(s)	515, 875, 961
Eco57I	CTGAAG	4 cut(s)	189, 752, 766, 1272
EcoRII	CCWGG	3 cut(s)	218, 250, 846
EcoT14I	CCWWGG	1 cut(s)	964
EcoT38I	GRGCYC	1 cut(s)	1350
ErhI	CCWWGG	1 cut(s)	964
FaeI	CATG	7 cut(s)	196, 205, 246, 264, 308, 875, 1156
FalI	AAGNNNNNCTT	2 cut(s)	425, 457
FaqI	GGGAC	2 cut(s)	532, 1230
FatI	CATG	7 cut(s)	192, 201, 242, 260, 304, 871, 1152
FbaI	TGATCA	1 cut(s)	211
Fnu4HI	GCNGC	3 cut(s)	5, 619, 764
FokI	GGATG	1 cut(s)	318
FriOI	GRGCYC	1 cut(s)	1350
Fsp4HI	GCNGC	3 cut(s)	5, 619, 764
FspBI	CTAG	5 cut(s)	68, 284, 509, 677, 1415
GluI	GCNGC	3 cut(s)	5, 619, 764
GsaI	CCCAGC	1 cut(s)	1202
GsuI	CTGGAG	2 cut(s)	241, 620
HaeIII	GGCC	2 cut(s)	265, 702
HapII	CCGG	4 cut(s)	267, 503, 585, 1089
Hin1II	CATG	7 cut(s)	196, 205, 246, 264, 308, 875, 1156
HincII	GTYRAC	2 cut(s)	248, 778
HindII	GTYRAC	2 cut(s)	248, 778
HindIII	AAGCTT	2 cut(s)	1033, 1335
HinfI	GANTC	7 cut(s)	197, 225, 270, 499, 1004, 1138, 1243
HpaII	CCGG	4 cut(s)	267, 503, 585, 1089
HphI	GGTGA	4 cut(s)	178, 574, 988, 1103
Hpy166II	GTNNAC	4 cut(s)	186, 248, 628, 778
Hpy188I	TCNGA	9 cut(s)	84, 169, 211, 494, 531, 689, 771, 1252, 1404
Hpy188III	TCNNGA	4 cut(s)	453, 812, 986, 1048
Hpy8I	GTNNAC	4 cut(s)	186, 248, 628, 778
HpyAV	CCTTC	7 cut(s)	58, 70, 120, 378, 395, 704, 1197
HpyCH4III	ACNGT	2 cut(s)	44, 1082
HpyCH4V	TGCA	8 cut(s)	7, 131, 279, 348, 871, 904, 913, 1072
HpyF10VI	GCNNNNNNNGC	3 cut(s)	464, 910, 1017
Hsp92II	CATG	7 cut(s)	196, 205, 246, 264, 308, 875, 1156
Ksp22I	TGATCA	1 cut(s)	211
Kzo9I	GATC	5 cut(s)	84, 211, 494, 735, 1213
Lsp1109I	GCAGC	2 cut(s)	630, 750
LweI	GCATC	1 cut(s)	919
MaeI	CTAG	5 cut(s)	68, 284, 509, 677, 1415
MalI	GATC	5 cut(s)	86, 213, 496, 737, 1215
MboI	GATC	5 cut(s)	84, 211, 494, 735, 1213
MboII	GAAGA	9 cut(s)	71, 90, 93, 386, 400, 403, 462, 1279, 1336
MflI	RGATCY	1 cut(s)	1213
MhlI	GDGCHC	2 cut(s)	1061, 1350
MluCI	AATT	7 cut(s)	375, 790, 819, 866, 921, 1095, 1177
MlyI	GAGTC	3 cut(s)	206, 234, 1252
MmeI	TCCRAC	1 cut(s)	697
MnlI	CCTC	9 cut(s)	30, 75, 98, 217, 469, 537, 590, 1110, 1258
MseI	TTAA	3 cut(s)	920, 1190, 1278
MslI	CAYNNNNRTG	3 cut(s)	155, 191, 303
MspCI	CTTAAG	1 cut(s)	1189
MspI	CCGG	4 cut(s)	267, 503, 585, 1089
MspR9I	CCNGG	4 cut(s)	220, 252, 267, 848
Mva1269I	GAATGC	1 cut(s)	807
MvaI	CCWGG	3 cut(s)	220, 252, 848
MwoI	GCNNNNNNNGC	3 cut(s)	464, 910, 1017
NciI	CCSGG	1 cut(s)	267
NdeII	GATC	5 cut(s)	84, 211, 494, 735, 1213
NlaIII	CATG	7 cut(s)	196, 205, 246, 264, 308, 875, 1156
NlaIV	GGNNCC	2 cut(s)	162, 1291
NspI	RCATGY	2 cut(s)	308, 1156
PceI	AGGCCT	1 cut(s)	702
PciI	ACATGT	1 cut(s)	304
PctI	GAATGC	1 cut(s)	807
PfeI	GAWTC	4 cut(s)	270, 499, 1004, 1138
PinAI	ACCGGT	1 cut(s)	1088
PkrI	GCNGC	3 cut(s)	6, 620, 765
Ple19I	CGATCG	1 cut(s)	497
PleI	GAGTC	3 cut(s)	205, 233, 1251
PpsI	GAGTC	3 cut(s)	205, 233, 1251
PscI	ACATGT	1 cut(s)	304
Psp6I	CCWGG	3 cut(s)	218, 250, 846
PspFI	CCCAGC	1 cut(s)	1198
PspGI	CCWGG	3 cut(s)	218, 250, 846
PspN4I	GGNNCC	2 cut(s)	162, 1291
PspPI	GGNCC	4 cut(s)	264, 515, 875, 961
PsuI	RGATCY	1 cut(s)	1213
PvuI	CGATCG	1 cut(s)	497
RsaI	GTAC	3 cut(s)	41, 627, 917
RsaNI	GTAC	3 cut(s)	40, 626, 916
RseI	CAYNNNNRTG	3 cut(s)	155, 191, 303
SaqAI	TTAA	3 cut(s)	920, 1190, 1278
SatI	GCNGC	3 cut(s)	5, 619, 764
Sau3AI	GATC	5 cut(s)	84, 211, 494, 735, 1213
Sau96I	GGNCC	4 cut(s)	264, 515, 875, 961
ScaI	AGTACT	1 cut(s)	917
SchI	GAGTC	3 cut(s)	206, 234, 1252
ScrFI	CCNGG	4 cut(s)	220, 252, 267, 848
SduI	GDGCHC	2 cut(s)	1061, 1350
SfaNI	GCATC	1 cut(s)	919
SinI	GGWCC	3 cut(s)	515, 875, 961
SmiMI	CAYNNNNRTG	3 cut(s)	155, 191, 303
SmlI	CTYRAG	6 cut(s)	310, 542, 1046, 1054, 1189, 1332
SmoI	CTYRAG	6 cut(s)	310, 542, 1046, 1054, 1189, 1332
SpeI	ACTAGT	1 cut(s)	508
Sse9I	AATT	7 cut(s)	375, 790, 819, 866, 921, 1095, 1177
SseBI	AGGCCT	1 cut(s)	702
SsiI	CCGC	1 cut(s)	577
SspMI	CTAG	5 cut(s)	68, 284, 509, 677, 1415
StuI	AGGCCT	1 cut(s)	702
StyD4I	CCNGG	4 cut(s)	218, 250, 265, 846
StyI	CCWWGG	1 cut(s)	964
TaaI	ACNGT	2 cut(s)	44, 1082
TaqI	TCGA	3 cut(s)	273, 497, 734
TasI	AATT	7 cut(s)	375, 790, 819, 866, 921, 1095, 1177
TatI	WGTACW	3 cut(s)	39, 625, 915
TfiI	GAWTC	4 cut(s)	270, 499, 1004, 1138
Tru1I	TTAA	3 cut(s)	920, 1190, 1278
Tru9I	TTAA	3 cut(s)	920, 1190, 1278
TscAI	CASTG	3 cut(s)	603, 733, 805
TseI	GCWGC	3 cut(s)	4, 618, 763
TspDTI	ATGAA	3 cut(s)	525, 956, 1329
TspGWI	ACGGA	1 cut(s)	324
TspRI	CASTG	3 cut(s)	603, 733, 805
Vha464I	CTTAAG	1 cut(s)	1189
VpaK11BI	GGWCC	3 cut(s)	515, 875, 961
XapI	RAATTY	3 cut(s)	375, 790, 1095
XceI	RCATGY	2 cut(s)	308, 1156
XcmI	CCANNNNNNNNNTGG	1 cut(s)	258
XspI	CTAG	5 cut(s)	68, 284, 509, 677, 1415
ZrmI	AGTACT	1 cut(s)	917

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.