Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0010986

Physical Location & Seq

Genomic Coordinates Reverse (-)

63341383 .. 63343651

Gene Structure 2269 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG469200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1422 bp

ATGCTGCAACAAACCAAGCCTCCATACCTTGACACAATGTACTGTTCCTTCTCAAACTCCCTCTCTCTAATTCTGCTTCTTCTGATCCTCCCACTCTCTTCTTCTATTCCTTCTGTCTCAAACTCAAATGCACACCATTCCACCAACACCATCAACATGGTTCCATCTGAAGCAGAAACTCTCTTCACCATCATGGAGTCCATGTCCTCTGATCAAACCTGGAGAGTCTCCTTTCCCAAACCATGTCAACCAGGCCAAACATGGCCTGGAATCGAGTGCAAACTAGGAGCAGACAACCACCTACATGTCTCAAGGCTTGACTTTGGTAACCATCCAAATCCAAGTTGCAAGAGAACAGCTACATTTCCTTCAGAAATCTCTGCTCTTCCACATCTTCAATCTGTGTTCTTCTTCAACTGCTTCACTCACACTAAGACCAGTTTCTCTGTTTCAAGAGCCTCCAATGCTTCTTCACTTCAACAGCTCAGTCTCCGATCGAATCCGGCACTAGTTGGTCCAATCCCACCTCAGATTTCATCACTCAAGTCCCTTGAAATCCTTACATTGTCTCAAAACCGCCTCACCGGAAAAATCCCACCAGAGGTTTTCAGCTTGAGCAGCTTAGTACACCTTGATTTGAGCTACAATATGCTGACAGGCACTATCCCAGTCCAACTAGGCAGTCTCAGAAACCTTCAAGGCCTTGATTTGAGCTACAATATGCTCACCGGGTCAATCCCAAACACAATTGGGGAACTGGTGTTGCTTCAGAAAGTTGACTTCAGCTCAAATTTGCTCAGTGGGGGCATTCCTGAGGGAATTCATCAGCTCAGTTTGTTGAATTTCCTGGCTTTGAGCAACAACAAATTGCATGGACAATTCCCAAAAGGTTTGGAGAAACTGCAAAGCTTGCAGTATTTAATTTTAGATGGTAATCCAATGAACATAACTCTGCCATTGGAGCTTGGTAAGTTGGTGAAACTTCAAGAACTCAGGCTTGCTGATTCTGGGTACTCAGGTACTATTCCAGAAAGCTTTTCACAGCTCAAGAACTTGAGCACTTTGTCATTGCAGAACAACCGTCTAACTGGTGAAATTCCGCTTGGTTTTGGCAGTCTCTCACACATATACCACTTGAATCTTAGTAGGAACATGTTGGGTGGTGTTGTGCCTTTCAATCCAAGTTTCTTGAGTAGGTTGGGAAGGAACTTGGATCTTAGTGGAAACCCTGGTCTCTGCTTGAGTCCCTCTGAAGCACATATTTTGAAGATTGGAGTTAATGTTTGTGGAACCAATAGCAATGGTTCTGCTATCCTTCCATTGAAGAATTCTCAAGCTTCATCTGGGCTCTCTAAACCGTTCTTTCTCCTTACACCTGCTTTATGTGTTTTGGGATTGCATCAGATATTGTTTCTAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0001101 GO:0002682 GO:0002831 GO:0003002 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0006952 GO:0007275 GO:0007389 GO:0008150 GO:0008356 GO:0009505 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009888 GO:0009987 GO:0010016 GO:0010026 GO:0010033 GO:0010090 GO:0010103 GO:0010374 GO:0010375 GO:0010376 GO:0016020 GO:0016043 GO:0030154 GO:0030312 GO:0031224 GO:0031225 GO:0031347 GO:0032101 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033218 GO:0033612 GO:0033993 GO:0042221 GO:0042277 GO:0043207 GO:0043900 GO:0044425 GO:0044464 GO:0045088 GO:0048367 GO:0048468 GO:0048583 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0050776 GO:0050789 GO:0050832 GO:0050896 GO:0051301 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071840 GO:0071944 GO:0080134 GO:0090558 GO:0090626 GO:0090698 GO:0097305 GO:0097306 GO:0098542 GO:1900150 GO:1901700 GO:1901701 GO:1905034

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8

Protein Analysis

473

Amino Acids

51.29

Weight (kDa)

8.58

Isoelectric Point (pI)

44.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	139 - 237	5.9e-08	Leucine-rich repeat region
LRR_8	PF13855	158 - 218	1.2e-06	Leucine rich repeat
LRR_8	PF13855	183 - 242	1.5e-10	Leucine rich repeat
LRR_14	PF23598	226 - 332	2.7e-08	Leucine-rich repeat region
LRR_8	PF13855	327 - 386	9e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42800
fragaria_vesca	FvH4_6g37770
malus_domestica	MD09G1156200.v1.1 MD17G1142500.v1.1
prunus_persica	Prupe.3G169100_v2.0.a1 Prupe.3G169100_v2.0.a1
pyrus_communis	pycom09g07500 pycom17g13570
rosa_chinensis	RchiOBHm_Chr2g0150831
rosa_laevigata	RLG00000020510
rosa_multiflora	Rmu_sc0003127.1_g000061 Rmu_sc0007617.1_g000016 Rmu_sc0024470.1_g000003
rosa_roxburghii	Rroxscaffold_2G00096930
rosa_rugosa	Rorug02G0422600
rosa_samantha	Rh2AG482900 Rh2BG495500 Rh2CG469200 Rh2DG506300
rosa_wichuraiana	Rw2G039580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1384
Acc36I	ACCTGC	1 cut(s)	1384
AciI	CCGC	2 cut(s)	577, 1100
AclWI	GGATC	2 cut(s)	79, 1221
AcsI	RAATTY	5 cut(s)	790, 819, 841, 1095, 1327
AcuI	CTGAAG	5 cut(s)	189, 354, 752, 766, 1272
AfaI	GTAC	4 cut(s)	41, 627, 1013, 1021
AfiI	CCNNNNNNNGG	1 cut(s)	601
AflIII	ACRYGT	2 cut(s)	304, 1152
AhlI	ACTAGT	1 cut(s)	508
AjnI	CCWGG	5 cut(s)	218, 250, 265, 846, 1228
AjuI	GAANNNNNNNTTGG	2 cut(s)	1086, 1118
Alw21I	GWGCWC	1 cut(s)	1061
Alw26I	GTCTC	8 cut(s)	121, 232, 313, 494, 573, 689, 1121, 1238
AlwI	GGATC	2 cut(s)	79, 1221
AoxI	GGCC	3 cut(s)	253, 263, 700
ApeKI	GCWGC	2 cut(s)	4, 618
ApoI	RAATTY	5 cut(s)	790, 819, 841, 1095, 1327
AspS9I	GGNCC	1 cut(s)	515
AsuC2I	CCSGG	1 cut(s)	730
AsuHPI	GGTGA	5 cut(s)	178, 574, 718, 988, 1103
AvaII	GGWCC	1 cut(s)	515
AxyI	CCTNAGG	1 cut(s)	813
BaeI	ACNNNNGTAYC	2 cut(s)	1003, 1036
BanII	GRGCYC	1 cut(s)	1350
BarI	GAAGNNNNNNTAC	2 cut(s)	32, 64
Bbv12I	GWGCWC	1 cut(s)	1061
BbvI	GCAGC	1 cut(s)	630
BccI	CCATC	5 cut(s)	158, 172, 197, 339, 923
BciT130I	CCWGG	5 cut(s)	220, 252, 267, 848, 1230
BclI	TGATCA	1 cut(s)	211
BcnI	CCSGG	1 cut(s)	730
BcoDI	GTCTC	8 cut(s)	121, 232, 313, 494, 573, 689, 1121, 1238
BcuI	ACTAGT	1 cut(s)	508
BfaI	CTAG	4 cut(s)	284, 509, 677, 1415
BfuAI	ACCTGC	1 cut(s)	1384
BisI	GCNGC	2 cut(s)	5, 619
BlsI	GCNGC	2 cut(s)	6, 620
Bme1390I	CCNGG	6 cut(s)	220, 252, 267, 730, 848, 1230
Bme18I	GGWCC	1 cut(s)	515
BmgT120I	GGNCC	1 cut(s)	515
BmiI	GGNNCC	2 cut(s)	162, 1291
BmrFI	CCNGG	6 cut(s)	220, 252, 267, 730, 848, 1230
BmrI	ACTGGG	1 cut(s)	662
BmsI	GCATC	1 cut(s)	1408
BmuI	ACTGGG	1 cut(s)	662
BpmI	CTGGAG	1 cut(s)	241
BpuEI	CTTGAG	8 cut(s)	295, 527, 634, 1031, 1075, 1210, 1261, 1317
BpuMI	CCSGG	1 cut(s)	730
BsaBI	GATNNNNATC	1 cut(s)	933
BsaI	GGTCTC	1 cut(s)	1238
BsaJI	CCNNGG	1 cut(s)	1228
BsaWI	WCCGGW	1 cut(s)	584
BsaXI	ACNNNNNCTCC	5 cut(s)	34, 188, 218, 1266, 1296
Bsc4I	CCNNNNNNNGG	1 cut(s)	601
Bse1I	ACTGG	4 cut(s)	438, 668, 762, 1093
Bse21I	CCTNAGG	1 cut(s)	813
Bse3DI	GCAATG	2 cut(s)	1067, 1306
Bse8I	GATNNNNATC	1 cut(s)	933
BseBI	CCWGG	5 cut(s)	220, 252, 267, 848, 1230
BseDI	CCNNGG	1 cut(s)	1228
BseGI	GGATG	1 cut(s)	331
BseJI	GATNNNNATC	1 cut(s)	933
BseLI	CCNNNNNNNGG	1 cut(s)	601
BseMI	GCAATG	2 cut(s)	1067, 1306
BseMII	CTCAG	8 cut(s)	499, 542, 700, 804, 811, 844, 1006, 1029
BseNI	ACTGG	4 cut(s)	438, 668, 762, 1093
BseXI	GCAGC	1 cut(s)	630
Bsh1285I	CGRYCG	1 cut(s)	497
BshFI	GGCC	3 cut(s)	255, 265, 702
BsiEI	CGRYCG	1 cut(s)	497
BsiHKAI	GWGCWC	1 cut(s)	1061
BsiSI	CCGG	3 cut(s)	503, 585, 729
BslFI	GGGAC	2 cut(s)	532, 1230
BslI	CCNNNNNNNGG	1 cut(s)	601
BsmAI	GTCTC	8 cut(s)	121, 232, 313, 494, 573, 689, 1121, 1238
BsmFI	GGGAC	2 cut(s)	532, 1230
BsmI	GAATGC	1 cut(s)	807
BsnI	GGCC	3 cut(s)	255, 265, 702
Bso31I	GGTCTC	1 cut(s)	1238
Bsp1286I	GDGCHC	2 cut(s)	1061, 1350
Bsp143I	GATC	4 cut(s)	84, 211, 494, 1213
BspACI	CCGC	2 cut(s)	577, 1100
BspANI	GGCC	3 cut(s)	255, 265, 702
BspCNI	CTCAG	8 cut(s)	498, 541, 699, 805, 810, 843, 1005, 1028
BspLI	GGNNCC	2 cut(s)	162, 1291
BspMI	ACCTGC	1 cut(s)	1384
BspPI	GGATC	2 cut(s)	79, 1221
BspQI	GCTCTTC	1 cut(s)	390
BspTNI	GGTCTC	1 cut(s)	1238
BsrDI	GCAATG	2 cut(s)	1067, 1306
BsrI	ACTGG	4 cut(s)	438, 668, 762, 1093
BssECI	CCNNGG	1 cut(s)	1228
BssMI	GATC	4 cut(s)	84, 211, 494, 1213
Bst2UI	CCWGG	5 cut(s)	220, 252, 267, 848, 1230
Bst4CI	ACNGT	3 cut(s)	44, 1082, 1359
Bst6I	CTCTTC	3 cut(s)	103, 188, 390
BstAPI	GCANNNNNTGC	1 cut(s)	910
BstC8I	GCNNGC	2 cut(s)	911, 999
BstEII	GGTNACC	1 cut(s)	326
BstF5I	GGATG	1 cut(s)	331
BstKTI	GATC	4 cut(s)	87, 214, 497, 1216
BstMAI	GTCTC	8 cut(s)	121, 232, 313, 494, 573, 689, 1121, 1238
BstMBI	GATC	4 cut(s)	84, 211, 494, 1213
BstMCI	CGRYCG	1 cut(s)	497
BstMWI	GCNNNNNNNGC	4 cut(s)	464, 618, 910, 961
BstNI	CCWGG	5 cut(s)	220, 252, 267, 848, 1230
BstNSI	RCATGY	2 cut(s)	308, 1156
BstPI	GGTNACC	1 cut(s)	326
BstSCI	CCNGG	6 cut(s)	218, 250, 265, 728, 846, 1228
BstV1I	GCAGC	1 cut(s)	630
BstX2I	RGATCY	1 cut(s)	1213
BstXI	CCANNNNNNTGG	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	1213
Bsu36I	CCTNAGG	1 cut(s)	813
BsuRI	GGCC	3 cut(s)	255, 265, 702
BtsCI	GGATG	1 cut(s)	331
BtsIMutI	CAGTG	1 cut(s)	805
BveI	ACCTGC	1 cut(s)	1384
Cac8I	GCNNGC	2 cut(s)	911, 999
Cfr13I	GGNCC	1 cut(s)	515
Csp6I	GTAC	4 cut(s)	40, 626, 1012, 1020
CviAII	CATG	8 cut(s)	157, 193, 202, 243, 261, 305, 872, 1153
CviQI	GTAC	4 cut(s)	40, 626, 1012, 1020
DpnI	GATC	4 cut(s)	86, 213, 496, 1215
DpnII	GATC	4 cut(s)	84, 211, 494, 1213
Eam1104I	CTCTTC	3 cut(s)	103, 188, 390
EarI	CTCTTC	3 cut(s)	103, 188, 390
Eco147I	AGGCCT	1 cut(s)	702
Eco24I	GRGCYC	1 cut(s)	1350
Eco31I	GGTCTC	1 cut(s)	1238
Eco47I	GGWCC	1 cut(s)	515
Eco57I	CTGAAG	5 cut(s)	189, 354, 752, 766, 1272
Eco81I	CCTNAGG	1 cut(s)	813
Eco91I	GGTNACC	1 cut(s)	326
EcoO65I	GGTNACC	1 cut(s)	326
EcoRI	GAATTC	2 cut(s)	819, 1327
EcoRII	CCWGG	5 cut(s)	218, 250, 265, 846, 1228
EcoT38I	GRGCYC	1 cut(s)	1350
FaeI	CATG	8 cut(s)	160, 196, 205, 246, 264, 308, 875, 1156
FaqI	GGGAC	2 cut(s)	532, 1230
FatI	CATG	8 cut(s)	156, 192, 201, 242, 260, 304, 871, 1152
FbaI	TGATCA	1 cut(s)	211
Fnu4HI	GCNGC	2 cut(s)	5, 619
FokI	GGATG	1 cut(s)	318
FriOI	GRGCYC	1 cut(s)	1350
Fsp4HI	GCNGC	2 cut(s)	5, 619
FspBI	CTAG	4 cut(s)	284, 509, 677, 1415
GluI	GCNGC	2 cut(s)	5, 619
GsuI	CTGGAG	1 cut(s)	241
HaeIII	GGCC	3 cut(s)	255, 265, 702
HapII	CCGG	3 cut(s)	503, 585, 729
Hin1II	CATG	8 cut(s)	160, 196, 205, 246, 264, 308, 875, 1156
HincII	GTYRAC	2 cut(s)	248, 778
HindII	GTYRAC	2 cut(s)	248, 778
HindIII	AAGCTT	3 cut(s)	907, 1033, 1335
HinfI	GANTC	7 cut(s)	197, 225, 270, 499, 1004, 1138, 1243
HpaII	CCGG	3 cut(s)	503, 585, 729
HphI	GGTGA	5 cut(s)	178, 574, 718, 988, 1103
Hpy166II	GTNNAC	3 cut(s)	248, 628, 778
Hpy188III	TCNNGA	6 cut(s)	453, 812, 986, 1028, 1048, 1189
Hpy8I	GTNNAC	3 cut(s)	248, 628, 778
HpyAV	CCTTC	6 cut(s)	58, 120, 378, 704, 1197, 1325
HpyCH4III	ACNGT	3 cut(s)	44, 1082, 1359
HpyCH4V	TGCA	9 cut(s)	7, 131, 279, 348, 871, 904, 913, 1072, 1399
HpyF10VI	GCNNNNNNNGC	4 cut(s)	464, 618, 910, 961
Hsp92II	CATG	8 cut(s)	160, 196, 205, 246, 264, 308, 875, 1156
Ksp22I	TGATCA	1 cut(s)	211
Kzo9I	GATC	4 cut(s)	84, 211, 494, 1213
LguI	GCTCTTC	1 cut(s)	390
LmnI	GCTCC	2 cut(s)	287, 961
Lsp1109I	GCAGC	1 cut(s)	630
LweI	GCATC	1 cut(s)	1408
MaeI	CTAG	4 cut(s)	284, 509, 677, 1415
MaeIII	GTNAC	1 cut(s)	326
MalI	GATC	4 cut(s)	86, 213, 496, 1215
MboI	GATC	4 cut(s)	84, 211, 494, 1213
MfeI	CAATTG	1 cut(s)	747
MflI	RGATCY	1 cut(s)	1213
MhlI	GDGCHC	2 cut(s)	1061, 1350
MlyI	GAGTC	3 cut(s)	206, 234, 1252
MmeI	TCCRAC	1 cut(s)	697
MseI	TTAA	2 cut(s)	920, 1278
MslI	CAYNNNNRTG	3 cut(s)	155, 191, 303
MspI	CCGG	3 cut(s)	503, 585, 729
MspR9I	CCNGG	6 cut(s)	220, 252, 267, 730, 848, 1230
MunI	CAATTG	1 cut(s)	747
Mva1269I	GAATGC	1 cut(s)	807
MvaI	CCWGG	5 cut(s)	220, 252, 267, 848, 1230
MwoI	GCNNNNNNNGC	4 cut(s)	464, 618, 910, 961
NciI	CCSGG	1 cut(s)	730
NdeII	GATC	4 cut(s)	84, 211, 494, 1213
NlaIII	CATG	8 cut(s)	160, 196, 205, 246, 264, 308, 875, 1156
NlaIV	GGNNCC	2 cut(s)	162, 1291
NspI	RCATGY	2 cut(s)	308, 1156
PaqCI	CACCTGC	1 cut(s)	1384
PceI	AGGCCT	1 cut(s)	702
PciI	ACATGT	2 cut(s)	304, 1152
PciSI	GCTCTTC	1 cut(s)	390
PctI	GAATGC	1 cut(s)	807
PfeI	GAWTC	4 cut(s)	270, 499, 1004, 1138
PkrI	GCNGC	2 cut(s)	6, 620
Ple19I	CGATCG	1 cut(s)	497
PleI	GAGTC	3 cut(s)	205, 233, 1251
PpsI	GAGTC	3 cut(s)	205, 233, 1251
PscI	ACATGT	2 cut(s)	304, 1152
Psp6I	CCWGG	5 cut(s)	218, 250, 265, 846, 1228
PspEI	GGTNACC	1 cut(s)	326
PspGI	CCWGG	5 cut(s)	218, 250, 265, 846, 1228
PspN4I	GGNNCC	2 cut(s)	162, 1291
PspPI	GGNCC	1 cut(s)	515
PsuI	RGATCY	1 cut(s)	1213
PvuI	CGATCG	1 cut(s)	497
RsaI	GTAC	4 cut(s)	41, 627, 1013, 1021
RsaNI	GTAC	4 cut(s)	40, 626, 1012, 1020
RseI	CAYNNNNRTG	3 cut(s)	155, 191, 303
SapI	GCTCTTC	1 cut(s)	390
SaqAI	TTAA	2 cut(s)	920, 1278
SatI	GCNGC	2 cut(s)	5, 619
Sau3AI	GATC	4 cut(s)	84, 211, 494, 1213
Sau96I	GGNCC	1 cut(s)	515
SchI	GAGTC	3 cut(s)	206, 234, 1252
ScrFI	CCNGG	6 cut(s)	220, 252, 267, 730, 848, 1230
SduI	GDGCHC	2 cut(s)	1061, 1350
SfaNI	GCATC	1 cut(s)	1408
SinI	GGWCC	1 cut(s)	515
SmiMI	CAYNNNNRTG	3 cut(s)	155, 191, 303
SmlI	CTYRAG	8 cut(s)	310, 542, 613, 1046, 1054, 1189, 1240, 1332
SmoI	CTYRAG	8 cut(s)	310, 542, 613, 1046, 1054, 1189, 1240, 1332
SpeI	ACTAGT	1 cut(s)	508
SseBI	AGGCCT	1 cut(s)	702
SsiI	CCGC	2 cut(s)	577, 1100
SspMI	CTAG	4 cut(s)	284, 509, 677, 1415
StuI	AGGCCT	1 cut(s)	702
StyD4I	CCNGG	6 cut(s)	218, 250, 265, 728, 846, 1228
TaaI	ACNGT	3 cut(s)	44, 1082, 1359
TaqI	TCGA	2 cut(s)	273, 497
TatI	WGTACW	2 cut(s)	39, 625
TfiI	GAWTC	4 cut(s)	270, 499, 1004, 1138
Tru1I	TTAA	2 cut(s)	920, 1278
Tru9I	TTAA	2 cut(s)	920, 1278
TscAI	CASTG	1 cut(s)	805
TseI	GCWGC	2 cut(s)	4, 618
TspDTI	ATGAA	4 cut(s)	525, 812, 956, 1329
TspRI	CASTG	1 cut(s)	805
VpaK11BI	GGWCC	1 cut(s)	515
XapI	RAATTY	5 cut(s)	790, 819, 841, 1095, 1327
XceI	RCATGY	2 cut(s)	308, 1156
XcmI	CCANNNNNNNNNTGG	2 cut(s)	258, 263
XspI	CTAG	4 cut(s)	284, 509, 677, 1415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.