AT2G42900

Peptidase of plants and bacteria

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0015977
Physical Location & Seq
Forward (+)
17854557 .. 17855511
955 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G42900.1

Sequence Viewer

Length: 831 bp
ATGGTTTCAATGACGGATCAGACTCTTCTTCAACCTTTCCTAGCCAAACCCACCACCAAAGGCTTAGCAACGGAATCGGATTCAGGTATTATTCTGCGGCTTTTCTCTATACTTCTCGTCGGAGCAATCTCTTTGTGGGCAAACCATGAGGCTTCAAAAGGCTTCTCCATAAGTATCATCAATGATGCTAAAGATTCTCCTTCCGGTAAAAGATTCGCCCTTTTCTTCGAATCTGATGATACGGCAGTGCGGATATTGCTCGATGCAAGCTTCTTTGTGGAGAGGTTTCTCTACGAGGGTGTTCCTCATCGTCTCCGTAAGCCTGTAAACCACGTTACCGTCCAATTCTGTGGAAACAGTAGTGATAGAGTAGATAGGTTCTCGGTAACTTCAGGTGCAAGTCATGGAGAGTATGTGATCAGATTAAGCCCATCTCTCACGGAAAGAAAAAAGTTTAGCAACGCCGTGGAATCTGCATTGCGACGTTCTATGGTTAGAATATGGCTATGGGGAGACGAGTCAGGAGCTTCGCCGGAGCTTGTGGCCGGCATGGTGGAGTATTTGGCCGTGGAGAGCCGAAAACGACGTCACTTTGAAAAGTTTGGTGGGAATTGGAAGGATAAGGAAAAGTCTGTGTATGTGGTTAGCTTGTTGGATTACTGTGAACGACGTAGCGAGGGTTTCATCCGACGGTTGAACCATGGGATGAGACTTAGGTGGGATGATCGGACGGTGGATCTTGCTTCGAGTGGTGCGTGTGGTTCACGCAAGGATGTGTTGCGTGAGCTTAAGATGGACGACAGTGGATTGATAATTGAGAGACGAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSP RWP-RK

Protein Analysis

276

Amino Acids

31.2

Weight (kDa)

9.25

Isoelectric Point (pI)

50.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSP PF04450 53 - 262 2e-55 Peptidase of plants and bacteria
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015977)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42900
fragaria_vesca FvH4_6g38280
prunus_persica Prupe.3G173400_v2.0.a1
pyrus_communis pycom17g13210
rosa_chinensis RchiOBHm_Chr2g0151581 RchiOBHm_Chr2g0151591
rosa_laevigata RLG00000020561
rosa_roxburghii Rroxscaffold_2G00096340
rosa_samantha Rh2AG487900 Rh2BG500400 Rh2BG500500 Rh2CG474400 Rh2DG511600 Rh2DG511700
rosa_wichuraiana Rw2G039990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 589
AciI CCGC 2 cut(s) 97, 250
AclWI GGATC 2 cut(s) 24, 744
AcoI YGGCCR 2 cut(s) 543, 564
AcuI CTGAAG 1 cut(s) 375
AcyI GRCGYC 1 cut(s) 586
AflII CTTAAG 1 cut(s) 788
AgsI TTSAA 5 cut(s) 9, 32, 156, 596, 697
AluBI AGCT 5 cut(s) 270, 527, 538, 648, 787
AluI AGCT 5 cut(s) 270, 527, 538, 648, 787
Alw26I GTCTC 4 cut(s) 317, 507, 703, 814
AlwI GGATC 2 cut(s) 24, 744
AoxI GGCC 2 cut(s) 543, 564
ArsI GACNNNNNNTTYG 2 cut(s) 571, 603
AsuII TTCGAA 1 cut(s) 228
BaeI ACNNNNGTAYC 2 cut(s) 231, 264
BccI CCATC 2 cut(s) 439, 787
BceAI ACGGC 3 cut(s) 258, 449, 551
BcgI CGANNNNNNTGC 2 cut(s) 57, 91
BclI TGATCA 1 cut(s) 417
BcoDI GTCTC 4 cut(s) 317, 507, 703, 814
BfaI CTAG 1 cut(s) 41
BfrI CTTAAG 1 cut(s) 788
BisI GCNGC 1 cut(s) 98
BlpI GCTNAGC 1 cut(s) 64
BlsI GCNGC 1 cut(s) 99
BmsI GCATC 2 cut(s) 175, 253
Bpu1102I GCTNAGC 1 cut(s) 64
Bpu14I TTCGAA 1 cut(s) 228
BsaHI GRCGYC 1 cut(s) 586
BsaJI CCNNGG 3 cut(s) 465, 567, 700
BsaWI WCCGGW 1 cut(s) 203
BsaXI ACNNNNNCTCC 2 cut(s) 399, 429
Bse118I RCCGGY 1 cut(s) 545
Bse3DI GCAATG 1 cut(s) 476
BseDI CCNNGG 3 cut(s) 465, 567, 700
BseGI GGATG 4 cut(s) 684, 711, 727, 778
BseMI GCAATG 1 cut(s) 476
BshFI GGCC 2 cut(s) 545, 566
BsiSI CCGG 3 cut(s) 204, 533, 546
BsmAI GTCTC 4 cut(s) 317, 507, 703, 814
BsmBI CGTCTC 3 cut(s) 317, 507, 814
BsnI GGCC 2 cut(s) 545, 566
Bsp119I TTCGAA 1 cut(s) 228
Bsp143I GATC 4 cut(s) 16, 417, 724, 736
Bsp1720I GCTNAGC 1 cut(s) 64
Bsp19I CCATGG 1 cut(s) 700
BspACI CCGC 2 cut(s) 97, 250
BspANI GGCC 2 cut(s) 545, 566
BspPI GGATC 2 cut(s) 24, 744
BspT104I TTCGAA 1 cut(s) 228
BspTI CTTAAG 1 cut(s) 788
BsrDI GCAATG 1 cut(s) 476
BsrFI RCCGGY 1 cut(s) 545
BssAI RCCGGY 1 cut(s) 545
BssECI CCNNGG 3 cut(s) 465, 567, 700
BssMI GATC 4 cut(s) 16, 417, 724, 736
BssNI GRCGYC 1 cut(s) 586
BssT1I CCWWGG 1 cut(s) 700
Bst4CI ACNGT 6 cut(s) 340, 359, 662, 693, 733, 803
Bst6I CTCTTC 1 cut(s) 30
BstACI GRCGYC 1 cut(s) 586
BstAFI CTTAAG 1 cut(s) 788
BstBI TTCGAA 1 cut(s) 228
BstC8I GCNNGC 2 cut(s) 268, 547
BstDEI CTNAG 2 cut(s) 64, 713
BstDSI CCRYGG 3 cut(s) 465, 567, 700
BstF5I GGATG 4 cut(s) 684, 711, 727, 778
BstKTI GATC 4 cut(s) 19, 420, 727, 739
BstMAI GTCTC 4 cut(s) 317, 507, 703, 814
BstMBI GATC 4 cut(s) 16, 417, 724, 736
BstMWI GCNNNNNNNGC 1 cut(s) 256
BstX2I RGATCY 1 cut(s) 736
BstXI CCANNNNNNTGG 1 cut(s) 350
BstYI RGATCY 1 cut(s) 736
BsuRI GGCC 2 cut(s) 545, 566
BtgI CCRYGG 3 cut(s) 465, 567, 700
BtsCI GGATG 4 cut(s) 684, 711, 727, 778
BtsI GCAGTG 1 cut(s) 252
BtsIMutI CAGTG 2 cut(s) 252, 808
Cac8I GCNNGC 2 cut(s) 268, 547
Cfr10I RCCGGY 1 cut(s) 545
CviAII CATG 5 cut(s) 146, 404, 550, 701, 828
DdeI CTNAG 2 cut(s) 64, 713
DpnI GATC 4 cut(s) 18, 419, 726, 738
DpnII GATC 4 cut(s) 16, 417, 724, 736
EaeI YGGCCR 2 cut(s) 543, 564
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 700
Eco57I CTGAAG 1 cut(s) 375
EcoT14I CCWWGG 1 cut(s) 700
ErhI CCWWGG 1 cut(s) 700
Esp3I CGTCTC 3 cut(s) 317, 507, 814
FaeI CATG 5 cut(s) 149, 407, 553, 704, 831
FatI CATG 5 cut(s) 145, 403, 549, 700, 827
FbaI TGATCA 1 cut(s) 417
Fnu4HI GCNGC 1 cut(s) 98
FokI GGATG 4 cut(s) 671, 718, 734, 785
Fsp4HI GCNGC 1 cut(s) 98
FspBI CTAG 1 cut(s) 41
GluI GCNGC 1 cut(s) 98
HaeIII GGCC 2 cut(s) 545, 566
HapII CCGG 3 cut(s) 204, 533, 546
Hin1I GRCGYC 1 cut(s) 586
Hin1II CATG 5 cut(s) 149, 407, 553, 704, 831
HindIII AAGCTT 1 cut(s) 268
HinfI GANTC 8 cut(s) 22, 74, 80, 194, 213, 230, 470, 518
HpaII CCGG 3 cut(s) 204, 533, 546
Hpy166II GTNNAC 3 cut(s) 328, 665, 764
Hpy188I TCNGA 7 cut(s) 21, 79, 122, 235, 422, 689, 729
Hpy188III TCNNGA 1 cut(s) 522
Hpy8I GTNNAC 3 cut(s) 328, 665, 764
Hpy99I CGWCG 5 cut(s) 122, 486, 588, 672, 693
HpyAV CCTTC 2 cut(s) 210, 610
HpyCH4III ACNGT 6 cut(s) 340, 359, 662, 693, 733, 803
HpyCH4IV ACGT 4 cut(s) 333, 484, 586, 670
HpyCH4V TGCA 3 cut(s) 266, 398, 476
HpyF10VI GCNNNNNNNGC 1 cut(s) 256
HpyF3I CTNAG 2 cut(s) 64, 713
HpySE526I ACGT 4 cut(s) 333, 484, 586, 670
Hsp92I GRCGYC 1 cut(s) 586
Hsp92II CATG 5 cut(s) 149, 407, 553, 704, 831
KroI GCCGGC 1 cut(s) 545
KroNI GCCGGC 1 cut(s) 547
Ksp22I TGATCA 1 cut(s) 417
Kzo9I GATC 4 cut(s) 16, 417, 724, 736
LmnI GCTCC 3 cut(s) 122, 524, 535
LpnPI CCDG 7 cut(s) 69, 217, 336, 378, 507, 546, 559
LweI GCATC 2 cut(s) 175, 253
MaeI CTAG 1 cut(s) 41
MaeII ACGT 4 cut(s) 333, 484, 586, 670
MaeIII GTNAC 3 cut(s) 334, 385, 587
MalI GATC 4 cut(s) 18, 419, 726, 738
MboI GATC 4 cut(s) 16, 417, 724, 736
MboII GAAGA 3 cut(s) 17, 20, 217
MflI RGATCY 1 cut(s) 736
MluCI AATT 3 cut(s) 344, 610, 813
MlyI GAGTC 2 cut(s) 16, 527
MmeI TCCRAC 3 cut(s) 100, 633, 712
MnlI CCTC 5 cut(s) 142, 276, 289, 315, 670
MroNI GCCGGC 1 cut(s) 545
MseI TTAA 2 cut(s) 425, 789
MspCI CTTAAG 1 cut(s) 788
MspI CCGG 3 cut(s) 204, 533, 546
MwoI GCNNNNNNNGC 1 cut(s) 256
NaeI GCCGGC 1 cut(s) 547
NcoI CCATGG 1 cut(s) 700
NdeII GATC 4 cut(s) 16, 417, 724, 736
NgoMIV GCCGGC 1 cut(s) 545
NlaIII CATG 5 cut(s) 149, 407, 553, 704, 831
NmuCI GTSAC 1 cut(s) 587
NspV TTCGAA 1 cut(s) 228
PcsI WCGNNNNNNNCGW 1 cut(s) 752
PdiI GCCGGC 1 cut(s) 547
PfeI GAWTC 6 cut(s) 74, 80, 194, 213, 230, 470
PkrI GCNGC 1 cut(s) 99
PleI GAGTC 2 cut(s) 16, 526
PpsI GAGTC 2 cut(s) 16, 526
PsuI RGATCY 1 cut(s) 736
SaqAI TTAA 2 cut(s) 425, 789
SatI GCNGC 1 cut(s) 98
Sau3AI GATC 4 cut(s) 16, 417, 724, 736
SchI GAGTC 2 cut(s) 16, 527
SfaNI GCATC 2 cut(s) 175, 253
SfuI TTCGAA 1 cut(s) 228
SmlI CTYRAG 1 cut(s) 788
SmoI CTYRAG 1 cut(s) 788
Sse9I AATT 3 cut(s) 344, 610, 813
SsiI CCGC 2 cut(s) 97, 250
SspMI CTAG 1 cut(s) 41
StyI CCWWGG 1 cut(s) 700
TaaI ACNGT 6 cut(s) 340, 359, 662, 693, 733, 803
TaiI ACGT 4 cut(s) 336, 487, 589, 673
TaqI TCGA 3 cut(s) 228, 261, 746
TasI AATT 3 cut(s) 344, 610, 813
TauI GCSGC 1 cut(s) 100
TfiI GAWTC 6 cut(s) 74, 80, 194, 213, 230, 470
Tru1I TTAA 2 cut(s) 425, 789
Tru9I TTAA 2 cut(s) 425, 789
TscAI CASTG 2 cut(s) 252, 808
TseFI GTSAC 1 cut(s) 587
Tsp45I GTSAC 1 cut(s) 587
TspDTI ATGAA 1 cut(s) 673
TspGWI ACGGA 4 cut(s) 29, 86, 305, 455
TspRI CASTG 2 cut(s) 252, 808
Vha464I CTTAAG 1 cut(s) 788
XspI CTAG 1 cut(s) 41
ZraI GACGTC 1 cut(s) 587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.