Rh2DG511700

Peptidase of plants and bacteria

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0015977
Physical Location & Seq
Reverse (-)
73622228 .. 73622623
396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG511700.1

Sequence Viewer

Length: 396 bp
ATGGAGGACCATATTCAATCCCTTTTCCAACCCTTCATTCACAGAAAACCAGTCACAAACCATGAAACAACTTATGATTCCATATCAAACGTCGGAATTCTCATTTGTTTCATTTCTGTCATCTCGGTCGCAATCCTCTCATTCTGGGGAAACCACGAAGCTTCTAAAGGGTTTGACATCACCGTCCTAAACGACGTCCCTCGAGACCTCTCCGCCGGCCACCGCTTCAACCTCTTCTACGTCGCTAATGACAAAGCGACCCGCATCGTCCTCGACGCCAATGATTTCATCGAACACCTTCTTTACCCTAGCGACGACAACTTCAAGAAGCAAGTAAACCGTGTCATTGTGAGGCTCGTCAGCGTGAACCAAACGCCGTGGGAGTTTTCGTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSP

Protein Analysis

131

Amino Acids

15.01

Weight (kDa)

5.79

Isoelectric Point (pI)

30.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSP PF04450 56 - 121 2e-06 Peptidase of plants and bacteria
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015977)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42900
fragaria_vesca FvH4_6g38280
prunus_persica Prupe.3G173400_v2.0.a1
pyrus_communis pycom17g13210
rosa_chinensis RchiOBHm_Chr2g0151581 RchiOBHm_Chr2g0151591
rosa_laevigata RLG00000020561
rosa_roxburghii Rroxscaffold_2G00096340
rosa_samantha Rh2AG487900 Rh2BG500400 Rh2BG500500 Rh2CG474400 Rh2DG511600 Rh2DG511700
rosa_wichuraiana Rw2G039990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 182
AatII GACGTC 1 cut(s) 198
AciI CCGC 3 cut(s) 213, 223, 262
AcoI YGGCCR 1 cut(s) 217
AcsI RAATTY 1 cut(s) 96
AcyI GRCGYC 2 cut(s) 195, 276
AgsI TTSAA 3 cut(s) 17, 229, 325
AjuI GAANNNNNNNTTGG 2 cut(s) 21, 53
AluBI AGCT 1 cut(s) 161
AluI AGCT 1 cut(s) 161
Alw26I GTCTC 1 cut(s) 198
Ama87I CYCGRG 1 cut(s) 201
AoxI GGCC 1 cut(s) 217
ApoI RAATTY 1 cut(s) 96
Asp700I GAANNNNTTC 1 cut(s) 297
AspS9I GGNCC 1 cut(s) 7
AsuHPI GGTGA 1 cut(s) 172
AvaI CYCGRG 1 cut(s) 201
AvaII GGWCC 1 cut(s) 7
BceAI ACGGC 1 cut(s) 361
BcgI CGANNNNNNTGC 2 cut(s) 253, 287
BcoDI GTCTC 1 cut(s) 198
BfaI CTAG 1 cut(s) 309
Bme18I GGWCC 1 cut(s) 7
BmeT110I CYCGRG 1 cut(s) 201
BmgT120I GGNCC 1 cut(s) 7
BmsI GCATC 1 cut(s) 273
BsaHI GRCGYC 2 cut(s) 195, 276
BsaI GGTCTC 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 377
BsaXI ACNNNNNCTCC 1 cut(s) 374
Bse118I RCCGGY 1 cut(s) 215
Bse1I ACTGG 1 cut(s) 50
BseDI CCNNGG 1 cut(s) 377
BseNI ACTGG 1 cut(s) 50
Bsh1285I CGRYCG 1 cut(s) 129
BshFI GGCC 1 cut(s) 219
BsiEI CGRYCG 1 cut(s) 129
BsiHKCI CYCGRG 1 cut(s) 201
BsiSI CCGG 1 cut(s) 216
BslFI GGGAC 1 cut(s) 182
BsmAI GTCTC 1 cut(s) 198
BsmFI GGGAC 1 cut(s) 182
BsnI GGCC 1 cut(s) 219
Bso31I GGTCTC 1 cut(s) 198
BsoBI CYCGRG 1 cut(s) 201
BspACI CCGC 3 cut(s) 213, 223, 262
BspANI GGCC 1 cut(s) 219
BspTNI GGTCTC 1 cut(s) 198
BsrFI RCCGGY 1 cut(s) 215
BsrI ACTGG 1 cut(s) 50
BssAI RCCGGY 1 cut(s) 215
BssECI CCNNGG 1 cut(s) 377
BssNI GRCGYC 2 cut(s) 195, 276
Bst4CI ACNGT 2 cut(s) 184, 341
Bst6I CTCTTC 1 cut(s) 239
BstACI GRCGYC 2 cut(s) 195, 276
BstC8I GCNNGC 1 cut(s) 217
BstDSI CCRYGG 1 cut(s) 377
BstMAI GTCTC 1 cut(s) 198
BstMCI CGRYCG 1 cut(s) 129
BsuRI GGCC 1 cut(s) 219
BtgI CCRYGG 1 cut(s) 377
Cac8I GCNNGC 1 cut(s) 217
Cfr10I RCCGGY 1 cut(s) 215
Cfr13I GGNCC 1 cut(s) 7
CseI GACGC 1 cut(s) 284
CspCI CAANNNNNGTGG 2 cut(s) 359, 394
CviAII CATG 1 cut(s) 62
CviJI RGCY 3 cut(s) 161, 219, 355
CviKI_1 RGCY 3 cut(s) 161, 219, 355
DrdI GACNNNNNNGTC 1 cut(s) 182
DseDI GACNNNNNNGTC 1 cut(s) 182
EaeI YGGCCR 1 cut(s) 217
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
EciI GGCGGA 1 cut(s) 202
Eco31I GGTCTC 1 cut(s) 198
Eco47I GGWCC 1 cut(s) 7
Eco88I CYCGRG 1 cut(s) 201
EcoRI GAATTC 1 cut(s) 96
FaeI CATG 1 cut(s) 65
FaiI YATR 4 cut(s) 12, 63, 75, 83
FaqI GGGAC 1 cut(s) 182
FatI CATG 1 cut(s) 61
FauI CCCGC 1 cut(s) 269
FspBI CTAG 1 cut(s) 309
HaeIII GGCC 1 cut(s) 219
HapII CCGG 1 cut(s) 216
HgaI GACGC 1 cut(s) 284
Hin1I GRCGYC 2 cut(s) 195, 276
Hin1II CATG 1 cut(s) 65
HindIII AAGCTT 1 cut(s) 159
HinfI GANTC 1 cut(s) 77
HpaII CCGG 1 cut(s) 216
HphI GGTGA 1 cut(s) 172
Hpy166II GTNNAC 2 cut(s) 337, 367
Hpy188I TCNGA 1 cut(s) 95
Hpy188III TCNNGA 2 cut(s) 203, 325
Hpy8I GTNNAC 2 cut(s) 337, 367
Hpy99I CGWCG 6 cut(s) 95, 197, 245, 278, 317, 394
HpyAV CCTTC 2 cut(s) 43, 308
HpyCH4III ACNGT 2 cut(s) 184, 341
HpyCH4IV ACGT 3 cut(s) 90, 195, 240
HpySE526I ACGT 3 cut(s) 90, 195, 240
Hsp92I GRCGYC 2 cut(s) 195, 276
Hsp92II CATG 1 cut(s) 65
KroI GCCGGC 1 cut(s) 215
KroNI GCCGGC 1 cut(s) 217
LpnPI CCDG 3 cut(s) 63, 130, 229
LweI GCATC 1 cut(s) 273
MaeI CTAG 1 cut(s) 309
MaeII ACGT 3 cut(s) 90, 195, 240
MaeIII GTNAC 1 cut(s) 52
MboII GAAGA 1 cut(s) 226
MluCI AATT 1 cut(s) 96
MmeI TCCRAC 2 cut(s) 52, 73
MnlI CCTC 6 cut(s) 146, 210, 218, 242, 281, 345
MroNI GCCGGC 1 cut(s) 215
MroXI GAANNNNTTC 1 cut(s) 297
MspI CCGG 1 cut(s) 216
NaeI GCCGGC 1 cut(s) 217
NgoMIV GCCGGC 1 cut(s) 215
NlaIII CATG 1 cut(s) 65
NmuCI GTSAC 1 cut(s) 52
PaeR7I CTCGAG 1 cut(s) 201
PdiI GCCGGC 1 cut(s) 217
PdmI GAANNNNTTC 1 cut(s) 297
PfeI GAWTC 1 cut(s) 77
PspPI GGNCC 1 cut(s) 7
Sau96I GGNCC 1 cut(s) 7
SetI ASST 7 cut(s) 93, 163, 198, 210, 234, 243, 300
SfaNI GCATC 1 cut(s) 273
Sfr274I CTCGAG 1 cut(s) 201
SinI GGWCC 1 cut(s) 7
SlaI CTCGAG 1 cut(s) 201
SmlI CTYRAG 1 cut(s) 201
SmoI CTYRAG 1 cut(s) 201
Sse9I AATT 1 cut(s) 96
SsiI CCGC 3 cut(s) 213, 223, 262
SspMI CTAG 1 cut(s) 309
TaaI ACNGT 2 cut(s) 184, 341
TaiI ACGT 3 cut(s) 93, 198, 243
TaqI TCGA 3 cut(s) 202, 273, 291
TaqII GACCGA 1 cut(s) 115
TasI AATT 1 cut(s) 96
TfiI GAWTC 1 cut(s) 77
TseFI GTSAC 1 cut(s) 52
Tsp45I GTSAC 1 cut(s) 52
TspDTI ATGAA 4 cut(s) 25, 78, 100, 277
VpaK11BI GGWCC 1 cut(s) 7
XapI RAATTY 1 cut(s) 96
XhoI CTCGAG 1 cut(s) 201
XmnI GAANNNNTTC 1 cut(s) 297
XspI CTAG 1 cut(s) 309
ZraI GACGTC 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.