Rh2DG511600

Peptidase of plants and bacteria

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0015977
Physical Location & Seq
Reverse (-)
73621788 .. 73622186
399 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG511600.1

Sequence Viewer

Length: 399 bp
ATGGAAGAGGCCAACGTCGACCGTGCATTAGTGTCGGCAATACGACGTGGCATGGTGCGTGTGTGGCTTTGGGATGGCATAGGGTCCGGTGCTCCGCCGGAGCTTGTGAACGGCATGGTGGAGTACCTAAGAATGGCGGCGGAAGGGTTTGGTGGCCTGAAAAGTGGTGCTTCCGGCTGGAAATTGCCAGAGGGCGAGGGCTACATTTGGTGGGAGGACAAGGACCCTGTAGCCGTGGCAAAGTTGTTGCACTATTATAAGGGGTACAGGAAGGGCTTCATTAAAAGGCTGAATAGAGCTATAAAGGATGAGTGGCATGATTGGACGGTGGATGATGCGTTAGGCATGCCATTACAAAATTTGTGCGATAAATATAATTTTTCCAGGTCCAGCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSP

Protein Analysis

132

Amino Acids

15.04

Weight (kDa)

6.73

Isoelectric Point (pI)

36.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSP PF04450 4 - 125 1.2e-20 Peptidase of plants and bacteria
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015977)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42900
fragaria_vesca FvH4_6g38280
prunus_persica Prupe.3G173400_v2.0.a1
pyrus_communis pycom17g13210
rosa_chinensis RchiOBHm_Chr2g0151581 RchiOBHm_Chr2g0151591
rosa_laevigata RLG00000020561
rosa_roxburghii Rroxscaffold_2G00096340
rosa_samantha Rh2AG487900 Rh2BG500400 Rh2BG500500 Rh2CG474400 Rh2DG511600 Rh2DG511700
rosa_wichuraiana Rw2G039990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 258
AccI GTMKAC 1 cut(s) 18
AciI CCGC 3 cut(s) 95, 137, 140
AcsI RAATTY 1 cut(s) 358
AfaI GTAC 2 cut(s) 125, 266
AfiI CCNNNNNNNGG 1 cut(s) 133
AjiI CACGTC 1 cut(s) 47
AjnI CCWGG 1 cut(s) 383
AluBI AGCT 3 cut(s) 103, 299, 393
AluI AGCT 3 cut(s) 103, 299, 393
Alw21I GWGCWC 1 cut(s) 94
AoxI GGCC 2 cut(s) 9, 154
ApoI RAATTY 1 cut(s) 358
Asp700I GAANNNNTTC 1 cut(s) 275
AspS9I GGNCC 3 cut(s) 84, 223, 387
AvaII GGWCC 3 cut(s) 84, 223, 387
Bbv12I GWGCWC 1 cut(s) 94
BccI CCATC 1 cut(s) 68
BceAI ACGGC 2 cut(s) 127, 218
BcgI CGANNNNNNTGC 2 cut(s) 15, 49
BciT130I CCWGG 1 cut(s) 385
BfmI CTRYAG 1 cut(s) 228
BisI GCNGC 1 cut(s) 138
BlsI GCNGC 1 cut(s) 139
Bme1390I CCNGG 1 cut(s) 385
Bme18I GGWCC 3 cut(s) 84, 223, 387
BmgBI CACGTC 1 cut(s) 47
BmgT120I GGNCC 3 cut(s) 84, 223, 387
BmiI GGNNCC 2 cut(s) 85, 225
BmrFI CCNGG 1 cut(s) 385
BmsI GCATC 1 cut(s) 325
BsaJI CCNNGG 1 cut(s) 234
BsaWI WCCGGW 1 cut(s) 86
Bsc4I CCNNNNNNNGG 1 cut(s) 133
BseBI CCWGG 1 cut(s) 385
BseDI CCNNGG 1 cut(s) 234
BseGI GGATG 3 cut(s) 79, 313, 337
BseLI CCNNNNNNNGG 1 cut(s) 133
Bsh1285I CGRYCG 1 cut(s) 22
BshFI GGCC 2 cut(s) 11, 156
BsiEI CGRYCG 1 cut(s) 22
BsiHKAI GWGCWC 1 cut(s) 94
BsiSI CCGG 3 cut(s) 87, 98, 174
BslI CCNNNNNNNGG 1 cut(s) 133
BsnI GGCC 2 cut(s) 11, 156
Bsp1286I GDGCHC 1 cut(s) 94
BspACI CCGC 3 cut(s) 95, 137, 140
BspANI GGCC 2 cut(s) 11, 156
BspLI GGNNCC 2 cut(s) 85, 225
BssECI CCNNGG 1 cut(s) 234
Bst2UI CCWGG 1 cut(s) 385
Bst4CI ACNGT 2 cut(s) 23, 328
BstC8I GCNNGC 1 cut(s) 347
BstDEI CTNAG 1 cut(s) 128
BstDSI CCRYGG 1 cut(s) 234
BstF5I GGATG 3 cut(s) 79, 313, 337
BstMCI CGRYCG 1 cut(s) 22
BstMWI GCNNNNNNNGC 1 cut(s) 64
BstNI CCWGG 1 cut(s) 385
BstNSI RCATGY 1 cut(s) 349
BstSCI CCNGG 1 cut(s) 383
BstSFI CTRYAG 1 cut(s) 228
BsuRI GGCC 2 cut(s) 11, 156
BtgI CCRYGG 1 cut(s) 234
BtrI CACGTC 1 cut(s) 47
BtsCI GGATG 3 cut(s) 79, 313, 337
Cac8I GCNNGC 1 cut(s) 347
Cfr13I GGNCC 3 cut(s) 84, 223, 387
Csp6I GTAC 2 cut(s) 124, 265
CviAII CATG 4 cut(s) 52, 115, 317, 346
CviQI GTAC 2 cut(s) 124, 265
DdeI CTNAG 1 cut(s) 128
EciI GGCGGA 2 cut(s) 84, 155
Eco47I GGWCC 3 cut(s) 84, 223, 387
EcoO109I RGGNCCY 1 cut(s) 223
EcoRII CCWGG 1 cut(s) 383
FaeI CATG 4 cut(s) 55, 118, 320, 349
FaiI YATR 8 cut(s) 53, 80, 116, 258, 302, 318, 347, 375
FalI AAGNNNNNCTT 2 cut(s) 154, 186
FatI CATG 4 cut(s) 51, 114, 316, 345
FblI GTMKAC 1 cut(s) 18
Fnu4HI GCNGC 1 cut(s) 138
FokI GGATG 3 cut(s) 86, 320, 344
Fsp4HI GCNGC 1 cut(s) 138
GluI GCNGC 1 cut(s) 138
HaeIII GGCC 2 cut(s) 11, 156
HapII CCGG 3 cut(s) 87, 98, 174
Hin1II CATG 4 cut(s) 55, 118, 320, 349
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HpaII CCGG 3 cut(s) 87, 98, 174
Hpy166II GTNNAC 2 cut(s) 19, 109
Hpy8I GTNNAC 2 cut(s) 19, 109
Hpy99I CGWCG 2 cut(s) 20, 48
HpyAV CCTTC 2 cut(s) 137, 265
HpyCH4III ACNGT 2 cut(s) 23, 328
HpyCH4IV ACGT 2 cut(s) 15, 46
HpyCH4V TGCA 2 cut(s) 26, 250
HpyF10VI GCNNNNNNNGC 1 cut(s) 64
HpyF3I CTNAG 1 cut(s) 128
HpySE526I ACGT 2 cut(s) 15, 46
Hsp92II CATG 4 cut(s) 55, 118, 320, 349
LmnI GCTCC 2 cut(s) 97, 100
LpnPI CCDG 9 cut(s) 100, 111, 163, 170, 187, 201, 240, 253, 370
LweI GCATC 1 cut(s) 325
MaeII ACGT 2 cut(s) 15, 46
MboII GAAGA 1 cut(s) 17
MhlI GDGCHC 1 cut(s) 94
MluCI AATT 3 cut(s) 182, 358, 376
MnlI CCTC 3 cut(s) 184, 190, 208
MroXI GAANNNNTTC 1 cut(s) 275
MseI TTAA 1 cut(s) 282
MspI CCGG 3 cut(s) 87, 98, 174
MspR9I CCNGG 1 cut(s) 385
MvaI CCWGG 1 cut(s) 385
MwoI GCNNNNNNNGC 1 cut(s) 64
NlaIII CATG 4 cut(s) 55, 118, 320, 349
NlaIV GGNNCC 2 cut(s) 85, 225
NspI RCATGY 1 cut(s) 349
PaeI GCATGC 1 cut(s) 349
PdmI GAANNNNTTC 1 cut(s) 275
PkrI GCNGC 1 cut(s) 139
PpuMI RGGWCCY 1 cut(s) 223
PsiI TTATAA 1 cut(s) 258
Psp5II RGGWCCY 1 cut(s) 223
Psp6I CCWGG 1 cut(s) 383
PspGI CCWGG 1 cut(s) 383
PspN4I GGNNCC 2 cut(s) 85, 225
PspPI GGNCC 3 cut(s) 84, 223, 387
PspPPI RGGWCCY 1 cut(s) 223
RsaI GTAC 2 cut(s) 125, 266
RsaNI GTAC 2 cut(s) 124, 265
SalI GTCGAC 1 cut(s) 17
SaqAI TTAA 1 cut(s) 282
SatI GCNGC 1 cut(s) 138
Sau96I GGNCC 3 cut(s) 84, 223, 387
ScrFI CCNGG 1 cut(s) 385
SduI GDGCHC 1 cut(s) 94
SetI ASST 7 cut(s) 18, 49, 105, 129, 301, 389, 395
SfaNI GCATC 1 cut(s) 325
SfcI CTRYAG 1 cut(s) 228
SinI GGWCC 3 cut(s) 84, 223, 387
SphI GCATGC 1 cut(s) 349
Sse9I AATT 3 cut(s) 182, 358, 376
SsiI CCGC 3 cut(s) 95, 137, 140
StyD4I CCNGG 1 cut(s) 383
TaaI ACNGT 2 cut(s) 23, 328
TaiI ACGT 2 cut(s) 18, 49
TaqI TCGA 1 cut(s) 18
TasI AATT 3 cut(s) 182, 358, 376
TauI GCSGC 1 cut(s) 140
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TspDTI ATGAA 1 cut(s) 268
VpaK11BI GGWCC 3 cut(s) 84, 223, 387
XapI RAATTY 1 cut(s) 358
XceI RCATGY 1 cut(s) 349
XmiI GTMKAC 1 cut(s) 18
XmnI GAANNNNTTC 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.