RchiOBHm_Chr2g0151591

Peptidase of plants and bacteria

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0015977
Physical Location & Seq
Reverse (-)
69180199 .. 69180723
525 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52076

Sequence Viewer

Length: 525 bp
ATGGAGGACCATATTCAATCCCTCTTCCAACCCCTCATTCACAGAAAACCAGTCACAAACCATAAAACAACTTATGATTCCATATCAAACGTCGGAATTCTCATTTGTTTCATTTCTGTCATCTCGGTCGCAATCCTCTCATTCTGGGGAAACCACGAAGCTTCTAAAGGGTTTGACATCACCGTCCTAAACGACGTCCCTCGAGACCTCTCTGCCGGCCACCGCTTCAACCTCTTCTATGTCGCCAATGACAAAGCCACCCGCATCGTCCTCGACGCCAATGATTTCATCGAACACCTTCTTCACCCTAGCGACGACAACTTCAAGAAGCAAGTAAACCGTGTCACTGTGAGGCTCGTCAGCGTGAACCTAACAAACGCCGTGGGAGTTTTCGTCGTAGAAGACGACCGTAGCTTTGTGGTGAACATAAGTCCTTCTGTTATGGAAGAGGCCAACGTCGACCGTGCATTAGTGTCGGCAATACGACGTGGCATGGTGCGTGTGTGGCTTTGGGATGGCTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSP

Protein Analysis

174

Amino Acids

19.63

Weight (kDa)

6.13

Isoelectric Point (pI)

37.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSP PF04450 56 - 173 9.1e-13 Peptidase of plants and bacteria
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0015977)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42900
fragaria_vesca FvH4_6g38280
prunus_persica Prupe.3G173400_v2.0.a1
pyrus_communis pycom17g13210
rosa_chinensis RchiOBHm_Chr2g0151581 RchiOBHm_Chr2g0151591
rosa_laevigata RLG00000020561
rosa_roxburghii Rroxscaffold_2G00096340
rosa_samantha Rh2AG487900 Rh2BG500400 Rh2BG500500 Rh2CG474400 Rh2DG511600 Rh2DG511700
rosa_wichuraiana Rw2G039990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 182
AatII GACGTC 1 cut(s) 198
AccI GTMKAC 1 cut(s) 459
AciI CCGC 2 cut(s) 223, 262
AcoI YGGCCR 1 cut(s) 217
AcsI RAATTY 1 cut(s) 96
AcyI GRCGYC 2 cut(s) 195, 276
AgsI TTSAA 3 cut(s) 17, 229, 325
AjiI CACGTC 1 cut(s) 488
AjuI GAANNNNNNNTTGG 2 cut(s) 21, 53
AluBI AGCT 2 cut(s) 161, 414
AluI AGCT 2 cut(s) 161, 414
Alw26I GTCTC 1 cut(s) 198
Ama87I CYCGRG 1 cut(s) 201
AoxI GGCC 2 cut(s) 217, 450
ApoI RAATTY 1 cut(s) 96
ArsI GACNNNNNNTTYG 2 cut(s) 398, 430
Asp700I GAANNNNTTC 1 cut(s) 297
AspS9I GGNCC 1 cut(s) 7
AsuHPI GGTGA 3 cut(s) 172, 296, 433
AvaI CYCGRG 1 cut(s) 201
AvaII GGWCC 1 cut(s) 7
BbsI GAAGAC 1 cut(s) 408
BccI CCATC 1 cut(s) 509
BceAI ACGGC 1 cut(s) 365
BcgI CGANNNNNNTGC 4 cut(s) 253, 287, 456, 490
BcoDI GTCTC 1 cut(s) 198
BfaI CTAG 1 cut(s) 309
Bme18I GGWCC 1 cut(s) 7
BmeT110I CYCGRG 1 cut(s) 201
BmgBI CACGTC 1 cut(s) 488
BmgT120I GGNCC 1 cut(s) 7
BmsI GCATC 1 cut(s) 273
BpiI GAAGAC 1 cut(s) 408
BsaHI GRCGYC 2 cut(s) 195, 276
BsaI GGTCTC 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 381
BsaXI ACNNNNNCTCC 2 cut(s) 378, 408
Bse118I RCCGGY 1 cut(s) 215
Bse1I ACTGG 1 cut(s) 50
BseDI CCNNGG 1 cut(s) 381
BseGI GGATG 1 cut(s) 520
BseNI ACTGG 1 cut(s) 50
Bsh1285I CGRYCG 3 cut(s) 129, 409, 463
BshFI GGCC 2 cut(s) 219, 452
BsiEI CGRYCG 3 cut(s) 129, 409, 463
BsiHKCI CYCGRG 1 cut(s) 201
BsiSI CCGG 1 cut(s) 216
BslFI GGGAC 1 cut(s) 182
BsmAI GTCTC 1 cut(s) 198
BsmFI GGGAC 1 cut(s) 182
BsnI GGCC 2 cut(s) 219, 452
Bso31I GGTCTC 1 cut(s) 198
BsoBI CYCGRG 1 cut(s) 201
BspACI CCGC 2 cut(s) 223, 262
BspANI GGCC 2 cut(s) 219, 452
BspTNI GGTCTC 1 cut(s) 198
BsrFI RCCGGY 1 cut(s) 215
BsrI ACTGG 1 cut(s) 50
BssAI RCCGGY 1 cut(s) 215
BssECI CCNNGG 1 cut(s) 381
BssNI GRCGYC 2 cut(s) 195, 276
Bst4CI ACNGT 5 cut(s) 184, 341, 349, 410, 464
Bst6I CTCTTC 3 cut(s) 29, 239, 441
BstACI GRCGYC 2 cut(s) 195, 276
BstC8I GCNNGC 1 cut(s) 217
BstDSI CCRYGG 1 cut(s) 381
BstF5I GGATG 1 cut(s) 520
BstMAI GTCTC 1 cut(s) 198
BstMCI CGRYCG 3 cut(s) 129, 409, 463
BstMWI GCNNNNNNNGC 1 cut(s) 505
BstV2I GAAGAC 1 cut(s) 408
BsuRI GGCC 2 cut(s) 219, 452
BtgI CCRYGG 1 cut(s) 381
BtrI CACGTC 1 cut(s) 488
BtsCI GGATG 1 cut(s) 520
BtsIMutI CAGTG 1 cut(s) 345
Cac8I GCNNGC 1 cut(s) 217
Cfr10I RCCGGY 1 cut(s) 215
Cfr13I GGNCC 1 cut(s) 7
CseI GACGC 1 cut(s) 284
CspCI CAANNNNNGTGG 2 cut(s) 363, 398
CviAII CATG 1 cut(s) 493
CviJI RGCY 8 cut(s) 161, 219, 257, 355, 414, 452, 508, 519
CviKI_1 RGCY 8 cut(s) 161, 219, 257, 355, 414, 452, 508, 519
DrdI GACNNNNNNGTC 1 cut(s) 182
DseDI GACNNNNNNGTC 1 cut(s) 182
EaeI YGGCCR 1 cut(s) 217
Eam1104I CTCTTC 3 cut(s) 29, 239, 441
EarI CTCTTC 3 cut(s) 29, 239, 441
Eco31I GGTCTC 1 cut(s) 198
Eco47I GGWCC 1 cut(s) 7
Eco88I CYCGRG 1 cut(s) 201
EcoRI GAATTC 1 cut(s) 96
FaeI CATG 1 cut(s) 496
FaiI YATR 8 cut(s) 12, 63, 75, 83, 240, 428, 443, 494
FaqI GGGAC 1 cut(s) 182
FatI CATG 1 cut(s) 492
FauI CCCGC 1 cut(s) 269
FblI GTMKAC 1 cut(s) 459
FspBI CTAG 1 cut(s) 309
HaeIII GGCC 2 cut(s) 219, 452
HapII CCGG 1 cut(s) 216
HgaI GACGC 1 cut(s) 284
Hin1I GRCGYC 2 cut(s) 195, 276
Hin1II CATG 1 cut(s) 496
HincII GTYRAC 1 cut(s) 460
HindII GTYRAC 1 cut(s) 460
HindIII AAGCTT 1 cut(s) 159
HinfI GANTC 1 cut(s) 77
HpaII CCGG 1 cut(s) 216
HphI GGTGA 3 cut(s) 172, 296, 433
Hpy166II GTNNAC 4 cut(s) 337, 367, 424, 460
Hpy188I TCNGA 1 cut(s) 95
Hpy188III TCNNGA 2 cut(s) 203, 325
Hpy8I GTNNAC 4 cut(s) 337, 367, 424, 460
Hpy99I CGWCG 7 cut(s) 95, 197, 278, 317, 398, 461, 489
HpyAV CCTTC 2 cut(s) 308, 444
HpyCH4III ACNGT 5 cut(s) 184, 341, 349, 410, 464
HpyCH4IV ACGT 4 cut(s) 90, 195, 456, 487
HpyCH4V TGCA 1 cut(s) 467
HpyF10VI GCNNNNNNNGC 1 cut(s) 505
HpySE526I ACGT 4 cut(s) 90, 195, 456, 487
Hsp92I GRCGYC 2 cut(s) 195, 276
Hsp92II CATG 1 cut(s) 496
KroI GCCGGC 1 cut(s) 215
KroNI GCCGGC 1 cut(s) 217
LpnPI CCDG 3 cut(s) 63, 130, 229
LweI GCATC 1 cut(s) 273
MaeI CTAG 1 cut(s) 309
MaeII ACGT 4 cut(s) 90, 195, 456, 487
MaeIII GTNAC 2 cut(s) 52, 343
MboII GAAGA 5 cut(s) 16, 226, 293, 413, 458
MluCI AATT 1 cut(s) 96
MmeI TCCRAC 2 cut(s) 52, 73
MnlI CCTC 9 cut(s) 32, 44, 146, 210, 218, 242, 281, 345, 442
MroNI GCCGGC 1 cut(s) 215
MroXI GAANNNNTTC 1 cut(s) 297
MspI CCGG 1 cut(s) 216
MwoI GCNNNNNNNGC 1 cut(s) 505
NaeI GCCGGC 1 cut(s) 217
NgoMIV GCCGGC 1 cut(s) 215
NlaIII CATG 1 cut(s) 496
NmuCI GTSAC 2 cut(s) 52, 343
PaeR7I CTCGAG 1 cut(s) 201
PcsI WCGNNNNNNNCGW 1 cut(s) 402
PdiI GCCGGC 1 cut(s) 217
PdmI GAANNNNTTC 1 cut(s) 297
PfeI GAWTC 1 cut(s) 77
PspPI GGNCC 1 cut(s) 7
SalI GTCGAC 1 cut(s) 458
Sau96I GGNCC 1 cut(s) 7
SfaNI GCATC 1 cut(s) 273
Sfr274I CTCGAG 1 cut(s) 201
SinI GGWCC 1 cut(s) 7
SlaI CTCGAG 1 cut(s) 201
SmlI CTYRAG 1 cut(s) 201
SmoI CTYRAG 1 cut(s) 201
Sse9I AATT 1 cut(s) 96
SsiI CCGC 2 cut(s) 223, 262
SspMI CTAG 1 cut(s) 309
TaaI ACNGT 5 cut(s) 184, 341, 349, 410, 464
TaiI ACGT 4 cut(s) 93, 198, 459, 490
TaqI TCGA 4 cut(s) 202, 273, 291, 459
TaqII GACCGA 1 cut(s) 115
TasI AATT 1 cut(s) 96
TfiI GAWTC 1 cut(s) 77
TscAI CASTG 1 cut(s) 352
TseFI GTSAC 2 cut(s) 52, 343
Tsp45I GTSAC 2 cut(s) 52, 343
TspDTI ATGAA 2 cut(s) 100, 277
TspRI CASTG 1 cut(s) 352
VpaK11BI GGWCC 1 cut(s) 7
XapI RAATTY 1 cut(s) 96
XhoI CTCGAG 1 cut(s) 201
XmiI GTMKAC 1 cut(s) 459
XmnI GAANNNNTTC 1 cut(s) 297
XspI CTAG 1 cut(s) 309
ZraI GACGTC 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.