Prupe.3G173400_v2.0.a1

Peptidase of plants and bacteria

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0015977
Physical Location & Seq
Reverse (-)
19101312 .. 19102169
858 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G173400.1

Sequence Viewer

Length: 858 bp
ATGCACGACCAACAATCCCTCTTCCAACCCCTCATCCATGGAAAACCAACAATCCCTCCTTCAACAAACAACCATTCTGGTGCTATCAACATCCTCGTTCGTTTCCTCCTAGTCTTCTTCATTGGACTTCTCGCATTATATGCCGACCGTGAAGCATCCAAAGGCTTCGACATAACCATCATAAACGACATCAAAGACTCTGCTGCTGGCTGGTGCTTCCACCTCTTCTACGTCTCCAACGACAAAGCCACCCGCATTATCCTCCACACCAGCAATTTCGTCGAACACCTTCTTTACCCTGAAGCACATGCACAACCCAAGAAGCACATAAACCATGTCGTTTTGAGGCTCTCCGGCCGGAACTTGACTTCCCACAACATAGGGGTCGTCGTTCACCACTCACCCAACAAAGAAAATGACCATTTTGTCCTTGACATAAGCCCTTCAATCATGGACGACCAGCCCAATGCCCACCGGCACCGCGCATTGGTCACTGCCATCCTACGCGGCATGGCACATGTATGGCTCTGGGACGGTGAGGCCCATGCCCCACCGGAGCTTATAGATGGCATGGTGGAGTACACAAGGATGGTGGCTGAGCAAGGCTTATTTGATGAGACGAAAAGCTATGGCGTGAGCACCAAATTGCCGGGGTGTGACAAGTTTTGGTGGAAGGACAAGGACCCTCGAGTGGTGGCACAAATGTTGAACTATTATGAGGGGCACAGCAAGGGGTTCATCCAACGGCTGAATGGAGCCATGAGAGAGAAGTGGCATGATAGGACGGTGGATGATGCATTAGGCATGCCATTGCAAAATTTGTGTGGAACCTTTAATTTTTCTAGGTGCAGCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSP

Protein Analysis

286

Amino Acids

32.37

Weight (kDa)

6.83

Isoelectric Point (pI)

37.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015977)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42900
fragaria_vesca FvH4_6g38280
prunus_persica Prupe.3G173400_v2.0.a1
pyrus_communis pycom17g13210
rosa_chinensis RchiOBHm_Chr2g0151581 RchiOBHm_Chr2g0151591
rosa_laevigata RLG00000020561
rosa_roxburghii Rroxscaffold_2G00096340
rosa_samantha Rh2AG487900 Rh2BG500400 Rh2BG500500 Rh2CG474400 Rh2DG511600 Rh2DG511700
rosa_wichuraiana Rw2G039990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 425
AccB1I GGYRCC 1 cut(s) 477
AccII CGCG 2 cut(s) 483, 507
AciI CCGC 3 cut(s) 253, 481, 507
AcoI YGGCCR 1 cut(s) 355
AcsI RAATTY 1 cut(s) 817
AcuI CTGAAG 1 cut(s) 321
AfaI GTAC 1 cut(s) 581
AfiI CCNNNNNNNGG 2 cut(s) 487, 691
AflIII ACRYGT 1 cut(s) 517
AgsI TTSAA 3 cut(s) 63, 447, 709
AloI GAACNNNNNNTCC 2 cut(s) 353, 385
AluBI AGCT 3 cut(s) 559, 627, 852
AluI AGCT 3 cut(s) 559, 627, 852
Alw21I GWGCWC 1 cut(s) 641
Alw26I GTCTC 2 cut(s) 238, 611
Ama87I CYCGRG 1 cut(s) 687
AoxI GGCC 2 cut(s) 355, 540
ApeKI GCWGC 2 cut(s) 203, 849
ApoI RAATTY 1 cut(s) 817
Asp700I GAANNNNTTC 1 cut(s) 288
AspLEI GCGC 1 cut(s) 485
AspS9I GGNCC 2 cut(s) 541, 682
AsuC2I CCSGG 1 cut(s) 651
AsuHPI GGTGA 3 cut(s) 386, 393, 548
AvaI CYCGRG 1 cut(s) 687
AvaII GGWCC 1 cut(s) 682
BaeGI GKGCMC 1 cut(s) 726
BanI GGYRCC 1 cut(s) 477
BbsI GAAGAC 1 cut(s) 106
Bbv12I GWGCWC 1 cut(s) 641
BbvI GCAGC 1 cut(s) 190
BccI CCATC 4 cut(s) 185, 506, 560, 583
BceAI ACGGC 1 cut(s) 761
BcgI CGANNNNNNTGC 2 cut(s) 262, 296
BcnI CCSGG 1 cut(s) 651
BcoDI GTCTC 2 cut(s) 238, 611
BfaI CTAG 2 cut(s) 110, 843
BisI GCNGC 3 cut(s) 204, 508, 850
BlpI GCTNAGC 1 cut(s) 597
BlsI GCNGC 3 cut(s) 205, 509, 851
Bme1390I CCNGG 1 cut(s) 651
Bme18I GGWCC 1 cut(s) 682
BmeT110I CYCGRG 1 cut(s) 687
BmgT120I GGNCC 2 cut(s) 541, 682
BmiI GGNNCC 4 cut(s) 479, 684, 757, 829
BmrFI CCNGG 1 cut(s) 651
BmsI GCATC 2 cut(s) 164, 784
BpiI GAAGAC 1 cut(s) 106
Bpu1102I GCTNAGC 1 cut(s) 597
BpuMI CCSGG 1 cut(s) 651
BsaJI CCNNGG 2 cut(s) 37, 650
BsaWI WCCGGW 1 cut(s) 553
BsaXI ACNNNNNCTCC 2 cut(s) 40, 70
Bsc4I CCNNNNNNNGG 2 cut(s) 487, 691
Bse118I RCCGGY 1 cut(s) 474
Bse3DI GCAATG 1 cut(s) 809
BseDI CCNNGG 2 cut(s) 37, 650
BseGI GGATG 7 cut(s) 33, 90, 155, 498, 594, 738, 796
BseLI CCNNNNNNNGG 2 cut(s) 487, 691
BseMI GCAATG 1 cut(s) 809
BseMII CTCAG 1 cut(s) 588
BseSI GKGCMC 1 cut(s) 726
BseX3I CGGCCG 1 cut(s) 355
BseXI GCAGC 1 cut(s) 190
Bsh1236I CGCG 2 cut(s) 483, 507
Bsh1285I CGRYCG 2 cut(s) 148, 358
BshFI GGCC 2 cut(s) 357, 542
BshNI GGYRCC 1 cut(s) 477
BsiEI CGRYCG 2 cut(s) 148, 358
BsiHKAI GWGCWC 1 cut(s) 641
BsiHKCI CYCGRG 1 cut(s) 687
BsiSI CCGG 5 cut(s) 354, 358, 475, 554, 650
BslFI GGGAC 1 cut(s) 545
BslI CCNNNNNNNGG 2 cut(s) 487, 691
BsmAI GTCTC 2 cut(s) 238, 611
BsmBI CGTCTC 2 cut(s) 238, 611
BsmFI GGGAC 1 cut(s) 545
BsnI GGCC 2 cut(s) 357, 542
BsoBI CYCGRG 1 cut(s) 687
Bsp1286I GDGCHC 2 cut(s) 641, 726
Bsp1720I GCTNAGC 1 cut(s) 597
Bsp19I CCATGG 1 cut(s) 37
BspACI CCGC 3 cut(s) 253, 481, 507
BspANI GGCC 2 cut(s) 357, 542
BspCNI CTCAG 1 cut(s) 589
BspFNI CGCG 2 cut(s) 483, 507
BspLI GGNNCC 4 cut(s) 479, 684, 757, 829
BspT107I GGYRCC 1 cut(s) 477
BsrDI GCAATG 1 cut(s) 809
BsrFI RCCGGY 1 cut(s) 474
BssAI RCCGGY 1 cut(s) 474
BssECI CCNNGG 2 cut(s) 37, 650
BssT1I CCWWGG 1 cut(s) 37
Bst4CI ACNGT 3 cut(s) 149, 536, 787
Bst6I CTCTTC 2 cut(s) 26, 230
BstAPI GCANNNNNTGC 1 cut(s) 140
BstC8I GCNNGC 2 cut(s) 208, 806
BstDEI CTNAG 1 cut(s) 597
BstDSI CCRYGG 1 cut(s) 37
BstF5I GGATG 7 cut(s) 33, 90, 155, 498, 594, 738, 796
BstFNI CGCG 2 cut(s) 483, 507
BstHHI GCGC 1 cut(s) 485
BstMAI GTCTC 2 cut(s) 238, 611
BstMCI CGRYCG 2 cut(s) 148, 358
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstNSI RCATGY 3 cut(s) 311, 521, 808
BstSCI CCNGG 1 cut(s) 649
BstSLI GKGCMC 1 cut(s) 726
BstUI CGCG 2 cut(s) 483, 507
BstV1I GCAGC 1 cut(s) 190
BstV2I GAAGAC 1 cut(s) 106
BstZI CGGCCG 1 cut(s) 355
BsuRI GGCC 2 cut(s) 357, 542
BtgI CCRYGG 1 cut(s) 37
BtsCI GGATG 7 cut(s) 33, 90, 155, 498, 594, 738, 796
BtsI GCAGTG 1 cut(s) 492
BtsIMutI CAGTG 1 cut(s) 492
Cac8I GCNNGC 2 cut(s) 208, 806
CfoI GCGC 1 cut(s) 485
Cfr10I RCCGGY 1 cut(s) 474
Cfr13I GGNCC 2 cut(s) 541, 682
Csp6I GTAC 1 cut(s) 580
CspCI CAANNNNNGTGG 2 cut(s) 573, 608
CviQI GTAC 1 cut(s) 580
DdeI CTNAG 1 cut(s) 597
DrdI GACNNNNNNGTC 1 cut(s) 425
DseDI GACNNNNNNGTC 1 cut(s) 425
EaeI YGGCCR 1 cut(s) 355
EagI CGGCCG 1 cut(s) 355
Eam1104I CTCTTC 2 cut(s) 26, 230
EarI CTCTTC 2 cut(s) 26, 230
EclXI CGGCCG 1 cut(s) 355
Eco130I CCWWGG 1 cut(s) 37
Eco47I GGWCC 1 cut(s) 682
Eco52I CGGCCG 1 cut(s) 355
Eco57I CTGAAG 1 cut(s) 321
Eco88I CYCGRG 1 cut(s) 687
EcoO109I RGGNCCY 1 cut(s) 682
EcoT14I CCWWGG 1 cut(s) 37
EcoT22I ATGCAT 1 cut(s) 799
ErhI CCWWGG 1 cut(s) 37
Esp3I CGTCTC 2 cut(s) 238, 611
FaqI GGGAC 1 cut(s) 545
FauI CCCGC 1 cut(s) 260
Fnu4HI GCNGC 3 cut(s) 204, 508, 850
FokI GGATG 7 cut(s) 20, 77, 142, 485, 601, 725, 803
Fsp4HI GCNGC 3 cut(s) 204, 508, 850
FspBI CTAG 2 cut(s) 110, 843
GlaI GCGC 1 cut(s) 484
GluI GCNGC 3 cut(s) 204, 508, 850
HaeIII GGCC 2 cut(s) 357, 542
HapII CCGG 5 cut(s) 354, 358, 475, 554, 650
HhaI GCGC 1 cut(s) 485
Hin6I GCGC 1 cut(s) 483
HinP1I GCGC 1 cut(s) 483
HinfI GANTC 1 cut(s) 197
HpaII CCGG 5 cut(s) 354, 358, 475, 554, 650
HphI GGTGA 3 cut(s) 386, 393, 548
Hpy166II GTNNAC 2 cut(s) 394, 582
Hpy188III TCNNGA 1 cut(s) 855
Hpy8I GTNNAC 2 cut(s) 394, 582
Hpy99I CGWCG 2 cut(s) 284, 392
HpyAV CCTTC 4 cut(s) 69, 299, 453, 667
HpyCH4III ACNGT 3 cut(s) 149, 536, 787
HpyCH4IV ACGT 1 cut(s) 231
HpyCH4V TGCA 5 cut(s) 4, 311, 797, 814, 849
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
HpyF3I CTNAG 1 cut(s) 597
HpySE526I ACGT 1 cut(s) 231
HspAI GCGC 1 cut(s) 483
LmnI GCTCC 2 cut(s) 556, 755
Lsp1109I GCAGC 1 cut(s) 190
LweI GCATC 2 cut(s) 164, 784
MaeI CTAG 2 cut(s) 110, 843
MaeII ACGT 1 cut(s) 231
MaeIII GTNAC 2 cut(s) 490, 656
MboII GAAGA 4 cut(s) 13, 106, 109, 217
MhlI GDGCHC 2 cut(s) 641, 726
MluCI AATT 4 cut(s) 274, 644, 817, 835
MlyI GAGTC 1 cut(s) 191
MmeI TCCRAC 3 cut(s) 49, 261, 766
Mph1103I ATGCAT 1 cut(s) 799
MroXI GAANNNNTTC 1 cut(s) 288
MseI TTAA 1 cut(s) 834
MslI CAYNNNNRTG 3 cut(s) 78, 520, 587
MspI CCGG 5 cut(s) 354, 358, 475, 554, 650
MspR9I CCNGG 1 cut(s) 651
MvnI CGCG 2 cut(s) 483, 507
MwoI GCNNNNNNNGC 1 cut(s) 140
NciI CCSGG 1 cut(s) 651
NcoI CCATGG 1 cut(s) 37
NlaIV GGNNCC 4 cut(s) 479, 684, 757, 829
NmuCI GTSAC 2 cut(s) 490, 656
NsiI ATGCAT 1 cut(s) 799
NspI RCATGY 3 cut(s) 311, 521, 808
PaeI GCATGC 1 cut(s) 808
PaeR7I CTCGAG 1 cut(s) 687
PciI ACATGT 1 cut(s) 517
PcsI WCGNNNNNNNCGW 1 cut(s) 237
PdmI GAANNNNTTC 1 cut(s) 288
PkrI GCNGC 3 cut(s) 205, 509, 851
PleI GAGTC 1 cut(s) 191
PpsI GAGTC 1 cut(s) 191
PpuMI RGGWCCY 1 cut(s) 682
PscI ACATGT 1 cut(s) 517
Psp5II RGGWCCY 1 cut(s) 682
PspN4I GGNNCC 4 cut(s) 479, 684, 757, 829
PspPI GGNCC 2 cut(s) 541, 682
PspPPI RGGWCCY 1 cut(s) 682
PspXI VCTCGAGB 1 cut(s) 687
RsaI GTAC 1 cut(s) 581
RsaNI GTAC 1 cut(s) 580
RseI CAYNNNNRTG 3 cut(s) 78, 520, 587
SaqAI TTAA 1 cut(s) 834
SatI GCNGC 3 cut(s) 204, 508, 850
Sau96I GGNCC 2 cut(s) 541, 682
SchI GAGTC 1 cut(s) 191
ScrFI CCNGG 1 cut(s) 651
SduI GDGCHC 2 cut(s) 641, 726
SetI ASST 8 cut(s) 225, 234, 291, 561, 629, 833, 848, 854
SfaNI GCATC 2 cut(s) 164, 784
Sfr274I CTCGAG 1 cut(s) 687
SinI GGWCC 1 cut(s) 682
SlaI CTCGAG 1 cut(s) 687
SmiMI CAYNNNNRTG 3 cut(s) 78, 520, 587
SmlI CTYRAG 1 cut(s) 687
SmoI CTYRAG 1 cut(s) 687
SphI GCATGC 1 cut(s) 808
Sse9I AATT 4 cut(s) 274, 644, 817, 835
SsiI CCGC 3 cut(s) 253, 481, 507
SspMI CTAG 2 cut(s) 110, 843
StyD4I CCNGG 1 cut(s) 649
StyI CCWWGG 1 cut(s) 37
TaaI ACNGT 3 cut(s) 149, 536, 787
TaiI ACGT 1 cut(s) 234
TaqI TCGA 3 cut(s) 168, 282, 688
TasI AATT 4 cut(s) 274, 644, 817, 835
TatI WGTACW 1 cut(s) 579
TauI GCSGC 1 cut(s) 510
Tru1I TTAA 1 cut(s) 834
Tru9I TTAA 1 cut(s) 834
TscAI CASTG 1 cut(s) 499
TseFI GTSAC 2 cut(s) 490, 656
TseI GCWGC 2 cut(s) 203, 849
Tsp45I GTSAC 2 cut(s) 490, 656
TspDTI ATGAA 2 cut(s) 109, 727
TspRI CASTG 1 cut(s) 499
VpaK11BI GGWCC 1 cut(s) 682
XapI RAATTY 1 cut(s) 817
XceI RCATGY 3 cut(s) 311, 521, 808
XcmI CCANNNNNNNNNTGG 1 cut(s) 749
XhoI CTCGAG 1 cut(s) 687
XmnI GAANNNNTTC 1 cut(s) 288
XspI CTAG 2 cut(s) 110, 843
Zsp2I ATGCAT 1 cut(s) 799
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.