FvH4_6g38280

Peptidase of plants and bacteria

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015977
Physical Location & Seq
Reverse (-)
30280918 .. 30281867
950 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g38280.t1

Sequence Viewer

Length: 843 bp
ATGGTGGCTATAGAGGACCATCAATCCATCTTCCAACCCCTCATCGACAGAAAACCAATCAAAACAAACCATGACACAACTTCTGATGATTCCACATCAAACGTCGGAATTCTCATACGTTTCATTTCCGTCATCTTGGTCGGAATCCTCTCATTCTGGGCGAACCATGAAGCTTCTAAAGGGTTTGACATCACCGTCCTCAACAATGTCGCTCGTGACTCCCTCGCCGGCCAGCGCTTCCACCTCTTCTACGTCGCCAACGACAAAGTCACCCGCATCGTCCTCCACGCCAGCGACTTCATCGAACACCTTCTTTACCCTAGCGACGACGACATCCCCAAGAAGCAAGTAAACAGTGTCGTTGTAAGGCTCGTCAGCGTGAACCTAACAAAAGCCGTGGTGGAAAACGACCGTAACTTTGTGGTGAACATAAGCCCTTCGGTTATGGAAGAGGCCAACGTCGACCGTGCATTAGTGTCGGCGATACGACGTGGCATGGCGCGTGTGTGGCTTTGGGATGGCAGAGGGTCCGGTGCTCCGCCGGAGCTTGTGGAAGGCATGGTGGAGTACGTAAGGATGGCTGCGGAAGGGTTTGGTGGCCTGAAAAGTGATTTTTCCGTCCGAAATATACCGGCAGGTGAGGGTTACGCTTGGTGGGAGGACAAGGACCCTGTAGCCTTGGCAACTTTGTTGCGGTATTATGAAGGGTACAGCAAGGGCTTCATTCAACGGCTGAATAGAGCTATGAAGTATAAGTGGCATGATGGGACGGTGAATGATGCACTTGGCATGCCATTACAAAATATATGTGGTGAATATAATTTTTCCAAGGCCAGTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSP

Protein Analysis

281

Amino Acids

31.41

Weight (kDa)

5.99

Isoelectric Point (pI)

33.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSP PF04450 61 - 273 1.9e-33 Peptidase of plants and bacteria
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015977)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42900
fragaria_vesca FvH4_6g38280
prunus_persica Prupe.3G173400_v2.0.a1
pyrus_communis pycom17g13210
rosa_chinensis RchiOBHm_Chr2g0151581 RchiOBHm_Chr2g0151591
rosa_laevigata RLG00000020561
rosa_roxburghii Rroxscaffold_2G00096340
rosa_samantha Rh2AG487900 Rh2BG500400 Rh2BG500500 Rh2CG474400 Rh2DG511600 Rh2DG511700
rosa_wichuraiana Rw2G039990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 626
AasI GACNNNNNNGTC 1 cut(s) 194
Acc36I ACCTGC 1 cut(s) 626
AccI GTMKAC 1 cut(s) 462
AccII CGCG 1 cut(s) 502
AciI CCGC 4 cut(s) 274, 539, 584, 694
AcoI YGGCCR 1 cut(s) 229
AcsI RAATTY 1 cut(s) 108
AfaI GTAC 2 cut(s) 569, 710
AfeI AGCGCT 1 cut(s) 236
AgsI TTSAA 1 cut(s) 728
AjiI CACGTC 1 cut(s) 491
AluBI AGCT 3 cut(s) 173, 547, 743
AluI AGCT 3 cut(s) 173, 547, 743
Alw21I GWGCWC 1 cut(s) 538
Aor51HI AGCGCT 1 cut(s) 236
AoxI GGCC 4 cut(s) 229, 453, 598, 831
ApeKI GCWGC 1 cut(s) 581
ApoI RAATTY 1 cut(s) 108
ArsI GACNNNNNNTTYG 2 cut(s) 401, 433
Asp700I GAANNNNTTC 1 cut(s) 309
AspLEI GCGC 2 cut(s) 237, 502
AspS9I GGNCC 3 cut(s) 16, 528, 667
AsuHPI GGTGA 6 cut(s) 184, 262, 436, 650, 784, 824
AvaII GGWCC 3 cut(s) 16, 528, 667
BauI CACGAG 1 cut(s) 213
Bbv12I GWGCWC 1 cut(s) 538
BbvI GCAGC 1 cut(s) 568
BccI CCATC 5 cut(s) 27, 35, 512, 571, 758
BceAI ACGGC 2 cut(s) 380, 746
BcgI CGANNNNNNTGC 2 cut(s) 459, 493
BfaI CTAG 1 cut(s) 321
BfmI CTRYAG 2 cut(s) 9, 672
BfoI RGCGCY 1 cut(s) 238
BfuAI ACCTGC 1 cut(s) 626
BisI GCNGC 1 cut(s) 582
BlsI GCNGC 1 cut(s) 583
Bme18I GGWCC 3 cut(s) 16, 528, 667
BmgBI CACGTC 1 cut(s) 491
BmgT120I GGNCC 3 cut(s) 16, 528, 667
BmiI GGNNCC 2 cut(s) 529, 669
BmsI GCATC 2 cut(s) 285, 769
BsaAI YACGTR 1 cut(s) 571
BsaJI CCNNGG 3 cut(s) 396, 678, 828
BsaWI WCCGGW 1 cut(s) 530
Bse118I RCCGGY 2 cut(s) 227, 631
Bse1I ACTGG 1 cut(s) 834
BseDI CCNNGG 3 cut(s) 396, 678, 828
BseGI GGATG 3 cut(s) 333, 523, 582
BseNI ACTGG 1 cut(s) 834
BseXI GCAGC 1 cut(s) 568
Bsh1236I CGCG 1 cut(s) 502
Bsh1285I CGRYCG 2 cut(s) 412, 466
BshFI GGCC 4 cut(s) 231, 455, 600, 833
BsiEI CGRYCG 2 cut(s) 412, 466
BsiHKAI GWGCWC 1 cut(s) 538
BsiSI CCGG 4 cut(s) 228, 531, 542, 632
BslFI GGGAC 1 cut(s) 781
BsmFI GGGAC 1 cut(s) 781
BsnI GGCC 4 cut(s) 231, 455, 600, 833
Bsp1286I GDGCHC 1 cut(s) 538
BspACI CCGC 4 cut(s) 274, 539, 584, 694
BspANI GGCC 4 cut(s) 231, 455, 600, 833
BspFNI CGCG 1 cut(s) 502
BspLI GGNNCC 2 cut(s) 529, 669
BspMI ACCTGC 1 cut(s) 626
BsrFI RCCGGY 2 cut(s) 227, 631
BsrI ACTGG 1 cut(s) 834
BssAI RCCGGY 2 cut(s) 227, 631
BssECI CCNNGG 3 cut(s) 396, 678, 828
BssSI CACGAG 1 cut(s) 213
BssT1I CCWWGG 2 cut(s) 678, 828
Bst2BI CACGAG 1 cut(s) 213
Bst4CI ACNGT 5 cut(s) 196, 356, 413, 467, 772
Bst6I CTCTTC 2 cut(s) 251, 444
BstBAI YACGTR 1 cut(s) 571
BstC8I GCNNGC 4 cut(s) 229, 233, 292, 791
BstDSI CCRYGG 1 cut(s) 396
BstF5I GGATG 3 cut(s) 333, 523, 582
BstFNI CGCG 1 cut(s) 502
BstH2I RGCGCY 1 cut(s) 238
BstHHI GCGC 2 cut(s) 237, 502
BstMCI CGRYCG 2 cut(s) 412, 466
BstMWI GCNNNNNNNGC 1 cut(s) 508
BstNSI RCATGY 1 cut(s) 793
BstSFI CTRYAG 2 cut(s) 9, 672
BstSNI TACGTA 1 cut(s) 571
BstUI CGCG 1 cut(s) 502
BstV1I GCAGC 1 cut(s) 568
BsuRI GGCC 4 cut(s) 231, 455, 600, 833
BtgI CCRYGG 1 cut(s) 396
BtrI CACGTC 1 cut(s) 491
BtsCI GGATG 3 cut(s) 333, 523, 582
BtsIMutI CAGTG 1 cut(s) 361
BveI ACCTGC 1 cut(s) 626
Cac8I GCNNGC 4 cut(s) 229, 233, 292, 791
CfoI GCGC 2 cut(s) 237, 502
Cfr10I RCCGGY 2 cut(s) 227, 631
Cfr13I GGNCC 3 cut(s) 16, 528, 667
Csp6I GTAC 2 cut(s) 568, 709
CspCI CAANNNNNGTGG 2 cut(s) 378, 413
CviAII CATG 6 cut(s) 71, 167, 496, 559, 761, 790
CviQI GTAC 2 cut(s) 568, 709
DrdI GACNNNNNNGTC 1 cut(s) 194
DseDI GACNNNNNNGTC 1 cut(s) 194
EaeI YGGCCR 1 cut(s) 229
Eam1104I CTCTTC 2 cut(s) 251, 444
EarI CTCTTC 2 cut(s) 251, 444
EciI GGCGGA 1 cut(s) 528
Eco105I TACGTA 1 cut(s) 571
Eco130I CCWWGG 2 cut(s) 678, 828
Eco47I GGWCC 3 cut(s) 16, 528, 667
Eco47III AGCGCT 1 cut(s) 236
EcoO109I RGGNCCY 1 cut(s) 667
EcoRI GAATTC 1 cut(s) 108
EcoT14I CCWWGG 2 cut(s) 678, 828
ErhI CCWWGG 2 cut(s) 678, 828
FaeI CATG 6 cut(s) 74, 170, 499, 562, 764, 793
FaqI GGGAC 1 cut(s) 781
FatI CATG 6 cut(s) 70, 166, 495, 558, 760, 789
FauI CCCGC 1 cut(s) 281
FblI GTMKAC 1 cut(s) 462
Fnu4HI GCNGC 1 cut(s) 582
FokI GGATG 3 cut(s) 320, 530, 589
Fsp4HI GCNGC 1 cut(s) 582
FspBI CTAG 1 cut(s) 321
GlaI GCGC 2 cut(s) 236, 501
GluI GCNGC 1 cut(s) 582
HaeII RGCGCY 1 cut(s) 238
HaeIII GGCC 4 cut(s) 231, 455, 600, 833
HapII CCGG 4 cut(s) 228, 531, 542, 632
HhaI GCGC 2 cut(s) 237, 502
Hin1II CATG 6 cut(s) 74, 170, 499, 562, 764, 793
Hin6I GCGC 2 cut(s) 235, 500
HinP1I GCGC 2 cut(s) 235, 500
HincII GTYRAC 1 cut(s) 463
HindII GTYRAC 1 cut(s) 463
HindIII AAGCTT 1 cut(s) 171
HinfI GANTC 3 cut(s) 89, 144, 218
HpaII CCGG 4 cut(s) 228, 531, 542, 632
HphI GGTGA 6 cut(s) 184, 262, 436, 650, 784, 824
Hpy166II GTNNAC 4 cut(s) 352, 382, 427, 463
Hpy188I TCNGA 4 cut(s) 85, 107, 143, 623
Hpy188III TCNNGA 1 cut(s) 215
Hpy8I GTNNAC 4 cut(s) 352, 382, 427, 463
Hpy99I CGWCG 6 cut(s) 107, 257, 329, 332, 464, 492
HpyAV CCTTC 5 cut(s) 320, 447, 548, 581, 698
HpyCH4III ACNGT 5 cut(s) 196, 356, 413, 467, 772
HpyCH4IV ACGT 6 cut(s) 102, 118, 252, 459, 490, 570
HpyCH4V TGCA 2 cut(s) 470, 782
HpyF10VI GCNNNNNNNGC 1 cut(s) 508
HpySE526I ACGT 6 cut(s) 102, 118, 252, 459, 490, 570
Hsp92II CATG 6 cut(s) 74, 170, 499, 562, 764, 793
HspAI GCGC 2 cut(s) 235, 500
KroI GCCGGC 1 cut(s) 227
KroNI GCCGGC 1 cut(s) 229
LmnI GCTCC 2 cut(s) 541, 544
Lsp1109I GCAGC 1 cut(s) 568
LweI GCATC 2 cut(s) 285, 769
MaeI CTAG 1 cut(s) 321
MaeII ACGT 6 cut(s) 102, 118, 252, 459, 490, 570
MaeIII GTNAC 4 cut(s) 215, 268, 413, 644
MboII GAAGA 3 cut(s) 22, 238, 461
MhlI GDGCHC 1 cut(s) 538
MluCI AATT 2 cut(s) 108, 820
MlyI GAGTC 1 cut(s) 212
MmeI TCCRAC 3 cut(s) 58, 85, 121
MroNI GCCGGC 1 cut(s) 227
MroXI GAANNNNTTC 1 cut(s) 309
MspI CCGG 4 cut(s) 228, 531, 542, 632
MvnI CGCG 1 cut(s) 502
MwoI GCNNNNNNNGC 1 cut(s) 508
NaeI GCCGGC 1 cut(s) 229
NgoMIV GCCGGC 1 cut(s) 227
NlaIII CATG 6 cut(s) 74, 170, 499, 562, 764, 793
NlaIV GGNNCC 2 cut(s) 529, 669
NmuCI GTSAC 2 cut(s) 215, 268
NspI RCATGY 1 cut(s) 793
PaeI GCATGC 1 cut(s) 793
PaqCI CACCTGC 1 cut(s) 626
PcsI WCGNNNNNNNCGW 1 cut(s) 258
PdiI GCCGGC 1 cut(s) 229
PdmI GAANNNNTTC 1 cut(s) 309
PfeI GAWTC 2 cut(s) 89, 144
PflFI GACNNNGTC 1 cut(s) 266
PkrI GCNGC 1 cut(s) 583
PleI GAGTC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 212
Ppu21I YACGTR 1 cut(s) 571
PpuMI RGGWCCY 1 cut(s) 667
Psp5II RGGWCCY 1 cut(s) 667
PspN4I GGNNCC 2 cut(s) 529, 669
PspPI GGNCC 3 cut(s) 16, 528, 667
PspPPI RGGWCCY 1 cut(s) 667
PsyI GACNNNGTC 1 cut(s) 266
RsaI GTAC 2 cut(s) 569, 710
RsaNI GTAC 2 cut(s) 568, 709
SalI GTCGAC 1 cut(s) 461
SatI GCNGC 1 cut(s) 582
Sau96I GGNCC 3 cut(s) 16, 528, 667
SchI GAGTC 1 cut(s) 212
SduI GDGCHC 1 cut(s) 538
SfaNI GCATC 2 cut(s) 285, 769
SfcI CTRYAG 2 cut(s) 9, 672
SinI GGWCC 3 cut(s) 16, 528, 667
SnaBI TACGTA 1 cut(s) 571
SphI GCATGC 1 cut(s) 793
Sse9I AATT 2 cut(s) 108, 820
SsiI CCGC 4 cut(s) 274, 539, 584, 694
SspMI CTAG 1 cut(s) 321
StyI CCWWGG 2 cut(s) 678, 828
TaaI ACNGT 5 cut(s) 196, 356, 413, 467, 772
TaiI ACGT 6 cut(s) 105, 121, 255, 462, 493, 573
TaqI TCGA 3 cut(s) 45, 303, 462
TasI AATT 2 cut(s) 108, 820
TfiI GAWTC 2 cut(s) 89, 144
TscAI CASTG 1 cut(s) 361
TseFI GTSAC 2 cut(s) 215, 268
TseI GCWGC 1 cut(s) 581
Tsp45I GTSAC 2 cut(s) 215, 268
TspDTI ATGAA 6 cut(s) 112, 183, 289, 712, 717, 761
TspGWI ACGGA 2 cut(s) 118, 607
TspRI CASTG 1 cut(s) 361
Tth111I GACNNNGTC 1 cut(s) 266
VpaK11BI GGWCC 3 cut(s) 16, 528, 667
XapI RAATTY 1 cut(s) 108
XceI RCATGY 1 cut(s) 793
XmiI GTMKAC 1 cut(s) 462
XmnI GAANNNNTTC 1 cut(s) 309
XspI CTAG 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.