Rw2G039990

Peptidase of plants and bacteria

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0015977
Physical Location & Seq
Reverse (-)
65493590 .. 65494557
968 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G039990.1

Sequence Viewer

Length: 915 bp
ATGATAGCATATGGTATGGGGCCTAACTATTTAGAAACCAATCGTTTAGCTTTCATTTCATATAGTGCTTACATCTTCTCGGACCATATTCAATCCCTCTTCCAACCCCTCATTCACAGAAAACGAGTCACAAACCATGAAACAACTTATGATTCCATATCAAACGCCGGAATTCTCATTTGTTTCATTTCCGTCATCTTGGTCGCAATCCTCTCATTCTGGGCAAACCACGAAGCTTCTAAAGGGTTTGACATCACCGTCCTAAACGACGTCCCTCGAGACCTCTCTGCCAGCCACCGCTTCAACCTCTTCTACGTCGCCAATGACAAAGCCACCCGCATCGTCCTCGACGCCAGCGATTTCATTGAACACCTTCTTTACCCTAGCGACGACAACTTCAAGAAGCAAGTAAACCGTGTCGTTGTGAGGTTCGTCAGCGTGAACCTAACAAACGCCGTGGGAGTTTTCGTCGTAGAAGACGACCGTAACTTTGTGGTGAACATAAGCCCTTTTGTTATGGAAGAGGCCAACGTCGACCGTGCATTAGTGTTGGCAATACGACGTGGCATGGCGCGTGTGTGGCTTTGGGATGGCATAGGGTCTGGTGCTCCGCCGGAGCTTGTGAACGGCATGGTGGAGTACCTAAGAATGGCGGCGGAAGGGTTTGCTGGCCTGAAAAGTGGTGTTTCCGACTGGAAATTGCCAGAGAGCGAGGGCTACATTTGGTGGGAGGACAAGGACCCTGTAGCCGTGGCAAAGTTGTTGCACTATTATGAGGGGTACAGGAAGGGCTTCATTAAACGACTGAATAGAGCTATGAAGGATGAGTGGCATGATTGGACGGTGGATGATGCGTTAGGCATGCCATTACAAAATTTGTGCGGTAAATATAATTTTTCCAGGTCCAGCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSP

Protein Analysis

304

Amino Acids

34.67

Weight (kDa)

5.92

Isoelectric Point (pI)

34.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSP PF04450 81 - 297 1.1e-30 Peptidase of plants and bacteria
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015977)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42900
fragaria_vesca FvH4_6g38280
prunus_persica Prupe.3G173400_v2.0.a1
pyrus_communis pycom17g13210
rosa_chinensis RchiOBHm_Chr2g0151581 RchiOBHm_Chr2g0151591
rosa_laevigata RLG00000020561
rosa_roxburghii Rroxscaffold_2G00096340
rosa_samantha Rh2AG487900 Rh2BG500400 Rh2BG500500 Rh2CG474400 Rh2DG511600 Rh2DG511700
rosa_wichuraiana Rw2G039990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 257
AatII GACGTC 1 cut(s) 273
AccI GTMKAC 1 cut(s) 534
AccII CGCG 1 cut(s) 574
AciI CCGC 6 cut(s) 298, 337, 611, 653, 656, 882
AcsI RAATTY 2 cut(s) 171, 874
AcyI GRCGYC 2 cut(s) 270, 351
AfaI GTAC 2 cut(s) 641, 782
AfiI CCNNNNNNNGG 1 cut(s) 649
AgsI TTSAA 4 cut(s) 92, 304, 368, 400
AjiI CACGTC 1 cut(s) 563
AjnI CCWGG 1 cut(s) 899
AjuI GAANNNNNNNTTGG 2 cut(s) 96, 128
AluBI AGCT 5 cut(s) 50, 236, 619, 815, 909
AluI AGCT 5 cut(s) 50, 236, 619, 815, 909
Alw21I GWGCWC 1 cut(s) 610
Alw26I GTCTC 1 cut(s) 273
Ama87I CYCGRG 1 cut(s) 276
AoxI GGCC 3 cut(s) 20, 525, 670
ApoI RAATTY 2 cut(s) 171, 874
ArsI GACNNNNNNTTYG 2 cut(s) 473, 505
Asp700I GAANNNNTTC 2 cut(s) 372, 791
AspLEI GCGC 1 cut(s) 574
AspS9I GGNCC 4 cut(s) 20, 82, 739, 903
AsuHPI GGTGA 2 cut(s) 247, 508
AvaI CYCGRG 1 cut(s) 276
AvaII GGWCC 3 cut(s) 82, 739, 903
BbsI GAAGAC 1 cut(s) 483
Bbv12I GWGCWC 1 cut(s) 610
BccI CCATC 1 cut(s) 584
BceAI ACGGC 3 cut(s) 440, 643, 734
BcgI CGANNNNNNTGC 2 cut(s) 328, 362
BciT130I CCWGG 1 cut(s) 901
BcoDI GTCTC 1 cut(s) 273
BfaI CTAG 1 cut(s) 384
BfmI CTRYAG 1 cut(s) 744
BisI GCNGC 1 cut(s) 654
BlsI GCNGC 1 cut(s) 655
Bme1390I CCNGG 1 cut(s) 901
Bme18I GGWCC 3 cut(s) 82, 739, 903
BmeT110I CYCGRG 1 cut(s) 276
BmgBI CACGTC 1 cut(s) 563
BmgT120I GGNCC 4 cut(s) 20, 82, 739, 903
BmiI GGNNCC 2 cut(s) 21, 741
BmrFI CCNGG 1 cut(s) 901
BmsI GCATC 2 cut(s) 348, 841
BpiI GAAGAC 1 cut(s) 483
BsaHI GRCGYC 2 cut(s) 270, 351
BsaI GGTCTC 1 cut(s) 273
BsaJI CCNNGG 2 cut(s) 456, 750
BsaXI ACNNNNNCTCC 2 cut(s) 453, 483
Bsc4I CCNNNNNNNGG 1 cut(s) 649
Bse1I ACTGG 1 cut(s) 698
BseBI CCWGG 1 cut(s) 901
BseDI CCNNGG 2 cut(s) 456, 750
BseGI GGATG 3 cut(s) 595, 829, 853
BseLI CCNNNNNNNGG 1 cut(s) 649
BseNI ACTGG 1 cut(s) 698
Bsh1236I CGCG 1 cut(s) 574
Bsh1285I CGRYCG 2 cut(s) 484, 538
BshFI GGCC 3 cut(s) 22, 527, 672
BsiEI CGRYCG 2 cut(s) 484, 538
BsiHKAI GWGCWC 1 cut(s) 610
BsiHKCI CYCGRG 1 cut(s) 276
BsiSI CCGG 2 cut(s) 168, 614
BslFI GGGAC 1 cut(s) 257
BslI CCNNNNNNNGG 1 cut(s) 649
BsmAI GTCTC 1 cut(s) 273
BsmFI GGGAC 1 cut(s) 257
BsnI GGCC 3 cut(s) 22, 527, 672
Bso31I GGTCTC 1 cut(s) 273
BsoBI CYCGRG 1 cut(s) 276
Bsp1286I GDGCHC 1 cut(s) 610
BspACI CCGC 6 cut(s) 298, 337, 611, 653, 656, 882
BspANI GGCC 3 cut(s) 22, 527, 672
BspFNI CGCG 1 cut(s) 574
BspLI GGNNCC 2 cut(s) 21, 741
BspTNI GGTCTC 1 cut(s) 273
BsrI ACTGG 1 cut(s) 698
BssECI CCNNGG 2 cut(s) 456, 750
BssNI GRCGYC 2 cut(s) 270, 351
Bst2UI CCWGG 1 cut(s) 901
Bst4CI ACNGT 5 cut(s) 259, 416, 485, 539, 844
Bst6I CTCTTC 3 cut(s) 104, 314, 516
BstACI GRCGYC 2 cut(s) 270, 351
BstC8I GCNNGC 4 cut(s) 292, 355, 670, 863
BstDEI CTNAG 1 cut(s) 644
BstDSI CCRYGG 2 cut(s) 456, 750
BstF5I GGATG 3 cut(s) 595, 829, 853
BstFNI CGCG 1 cut(s) 574
BstHHI GCGC 1 cut(s) 574
BstMAI GTCTC 1 cut(s) 273
BstMCI CGRYCG 2 cut(s) 484, 538
BstMWI GCNNNNNNNGC 1 cut(s) 580
BstNI CCWGG 1 cut(s) 901
BstNSI RCATGY 1 cut(s) 865
BstSCI CCNGG 1 cut(s) 899
BstSFI CTRYAG 1 cut(s) 744
BstUI CGCG 1 cut(s) 574
BstV2I GAAGAC 1 cut(s) 483
BsuRI GGCC 3 cut(s) 22, 527, 672
BtgI CCRYGG 2 cut(s) 456, 750
BtrI CACGTC 1 cut(s) 563
BtsCI GGATG 3 cut(s) 595, 829, 853
Cac8I GCNNGC 4 cut(s) 292, 355, 670, 863
CfoI GCGC 1 cut(s) 574
Cfr13I GGNCC 4 cut(s) 20, 82, 739, 903
CseI GACGC 1 cut(s) 359
Csp6I GTAC 2 cut(s) 640, 781
CspCI CAANNNNNGTGG 2 cut(s) 438, 473
CviAII CATG 5 cut(s) 137, 568, 631, 833, 862
CviQI GTAC 2 cut(s) 640, 781
DdeI CTNAG 1 cut(s) 644
DrdI GACNNNNNNGTC 1 cut(s) 257
DseDI GACNNNNNNGTC 1 cut(s) 257
Eam1104I CTCTTC 3 cut(s) 104, 314, 516
EarI CTCTTC 3 cut(s) 104, 314, 516
EciI GGCGGA 2 cut(s) 600, 671
Eco31I GGTCTC 1 cut(s) 273
Eco47I GGWCC 3 cut(s) 82, 739, 903
Eco88I CYCGRG 1 cut(s) 276
EcoO109I RGGNCCY 2 cut(s) 20, 739
EcoRI GAATTC 1 cut(s) 171
EcoRII CCWGG 1 cut(s) 899
FaeI CATG 5 cut(s) 140, 571, 634, 836, 865
FaqI GGGAC 1 cut(s) 257
FatI CATG 5 cut(s) 136, 567, 630, 832, 861
FauI CCCGC 1 cut(s) 344
FauNDI CATATG 1 cut(s) 10
FblI GTMKAC 1 cut(s) 534
Fnu4HI GCNGC 1 cut(s) 654
FokI GGATG 3 cut(s) 602, 836, 860
Fsp4HI GCNGC 1 cut(s) 654
FspBI CTAG 1 cut(s) 384
GlaI GCGC 1 cut(s) 573
GluI GCNGC 1 cut(s) 654
HaeIII GGCC 3 cut(s) 22, 527, 672
HapII CCGG 2 cut(s) 168, 614
HgaI GACGC 1 cut(s) 359
HhaI GCGC 1 cut(s) 574
Hin1I GRCGYC 2 cut(s) 270, 351
Hin1II CATG 5 cut(s) 140, 571, 634, 836, 865
Hin6I GCGC 1 cut(s) 572
HinP1I GCGC 1 cut(s) 572
HincII GTYRAC 1 cut(s) 535
HindII GTYRAC 1 cut(s) 535
HindIII AAGCTT 1 cut(s) 234
HinfI GANTC 2 cut(s) 126, 152
HpaII CCGG 2 cut(s) 168, 614
HphI GGTGA 2 cut(s) 247, 508
Hpy166II GTNNAC 5 cut(s) 412, 442, 499, 535, 625
Hpy188I TCNGA 2 cut(s) 82, 691
Hpy188III TCNNGA 2 cut(s) 278, 400
Hpy8I GTNNAC 5 cut(s) 412, 442, 499, 535, 625
Hpy99I CGWCG 7 cut(s) 272, 320, 353, 392, 473, 536, 564
HpyAV CCTTC 4 cut(s) 383, 653, 781, 814
HpyCH4III ACNGT 5 cut(s) 259, 416, 485, 539, 844
HpyCH4IV ACGT 4 cut(s) 270, 315, 531, 562
HpyCH4V TGCA 2 cut(s) 542, 766
HpyF10VI GCNNNNNNNGC 1 cut(s) 580
HpyF3I CTNAG 1 cut(s) 644
HpySE526I ACGT 4 cut(s) 270, 315, 531, 562
Hsp92I GRCGYC 2 cut(s) 270, 351
Hsp92II CATG 5 cut(s) 140, 571, 634, 836, 865
HspAI GCGC 1 cut(s) 572
LmnI GCTCC 2 cut(s) 613, 616
LweI GCATC 2 cut(s) 348, 841
MaeI CTAG 1 cut(s) 384
MaeII ACGT 4 cut(s) 270, 315, 531, 562
MaeIII GTNAC 2 cut(s) 127, 485
MboII GAAGA 5 cut(s) 67, 91, 301, 488, 533
MhlI GDGCHC 1 cut(s) 610
MluCI AATT 4 cut(s) 171, 698, 874, 892
MlyI GAGTC 1 cut(s) 135
MmeI TCCRAC 2 cut(s) 127, 714
MroXI GAANNNNTTC 2 cut(s) 372, 791
MseI TTAA 1 cut(s) 798
MslI CAYNNNNRTG 1 cut(s) 771
MspI CCGG 2 cut(s) 168, 614
MspR9I CCNGG 1 cut(s) 901
MvaI CCWGG 1 cut(s) 901
MvnI CGCG 1 cut(s) 574
MwoI GCNNNNNNNGC 1 cut(s) 580
NdeI CATATG 1 cut(s) 10
NlaIII CATG 5 cut(s) 140, 571, 634, 836, 865
NlaIV GGNNCC 2 cut(s) 21, 741
NmuCI GTSAC 1 cut(s) 127
NspI RCATGY 1 cut(s) 865
PaeI GCATGC 1 cut(s) 865
PaeR7I CTCGAG 1 cut(s) 276
PcsI WCGNNNNNNNCGW 2 cut(s) 354, 477
PdmI GAANNNNTTC 2 cut(s) 372, 791
PfeI GAWTC 1 cut(s) 152
PkrI GCNGC 1 cut(s) 655
PleI GAGTC 1 cut(s) 134
PpsI GAGTC 1 cut(s) 134
PpuMI RGGWCCY 1 cut(s) 739
Psp5II RGGWCCY 1 cut(s) 739
Psp6I CCWGG 1 cut(s) 899
PspGI CCWGG 1 cut(s) 899
PspN4I GGNNCC 2 cut(s) 21, 741
PspPI GGNCC 4 cut(s) 20, 82, 739, 903
PspPPI RGGWCCY 1 cut(s) 739
RsaI GTAC 2 cut(s) 641, 782
RsaNI GTAC 2 cut(s) 640, 781
RseI CAYNNNNRTG 1 cut(s) 771
SalI GTCGAC 1 cut(s) 533
SaqAI TTAA 1 cut(s) 798
SatI GCNGC 1 cut(s) 654
Sau96I GGNCC 4 cut(s) 20, 82, 739, 903
SchI GAGTC 1 cut(s) 135
ScrFI CCNGG 1 cut(s) 901
SduI GDGCHC 1 cut(s) 610
SfaNI GCATC 2 cut(s) 348, 841
SfcI CTRYAG 1 cut(s) 744
Sfr274I CTCGAG 1 cut(s) 276
SinI GGWCC 3 cut(s) 82, 739, 903
SlaI CTCGAG 1 cut(s) 276
SmiMI CAYNNNNRTG 1 cut(s) 771
SmlI CTYRAG 1 cut(s) 276
SmoI CTYRAG 1 cut(s) 276
SphI GCATGC 1 cut(s) 865
Sse9I AATT 4 cut(s) 171, 698, 874, 892
SsiI CCGC 6 cut(s) 298, 337, 611, 653, 656, 882
SspMI CTAG 1 cut(s) 384
StyD4I CCNGG 1 cut(s) 899
TaaI ACNGT 5 cut(s) 259, 416, 485, 539, 844
TaiI ACGT 4 cut(s) 273, 318, 534, 565
TaqI TCGA 3 cut(s) 277, 348, 534
TasI AATT 4 cut(s) 171, 698, 874, 892
TauI GCSGC 1 cut(s) 656
TfiI GAWTC 1 cut(s) 152
Tru1I TTAA 1 cut(s) 798
Tru9I TTAA 1 cut(s) 798
TseFI GTSAC 1 cut(s) 127
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 7 cut(s) 43, 48, 153, 175, 352, 784, 833
TspGWI ACGGA 1 cut(s) 181
VpaK11BI GGWCC 3 cut(s) 82, 739, 903
XapI RAATTY 2 cut(s) 171, 874
XceI RCATGY 1 cut(s) 865
XhoI CTCGAG 1 cut(s) 276
XmiI GTMKAC 1 cut(s) 534
XmnI GAANNNNTTC 2 cut(s) 372, 791
XspI CTAG 1 cut(s) 384
ZraI GACGTC 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.