AT2G42910

Ribose-phosphate pyrophosphokinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0009478
Physical Location & Seq
Forward (+)
17856249 .. 17858667
2419 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G42910.1

Sequence Viewer

Length: 1014 bp
ATGTCTGAGAACGCAGCCAACAACATCATGGAGACCAAGATTTGTACAGACGCCATCGTGTCTGAATTACAGAAGAAGAAAGTTCATCTCTTTTACTGCTTAGAGTGCGAAGAACTTGCTCGCAACATCGCCGCTGAATCTGATCACATCACTCTCCAATCCATCAACTGGAGGAGTTTTGCTGATGGATTCCCGAATCTATTTATCAACAACGCACATGATATCCGAGGCCAGCACGTTGCGTTCCTTGCTTCATTCAGTTCCCCTGCTGTCATCTTTGAGCAGATCTCTGTCATTTACTTGCTCCCTCGATTGTTTGTTGCGTCCTTCACTTTGGTGTTGCCTTTCTTCCCCACTGGCTCCTTTGAGAGAATGGAAGAGGAAGGAGATGTAGCAACTGCTTTTACCATGGCAAGGATTGTCTCTAATATCCCCATTTCACGCGGTGGTCCGACTAGTGTTGTCATCTATGACATTCACGCTTTGCAGGAAAGGTTTTACTTTGCCGATCAGGTTCTTCCTTTGTTTGAGACTGGAATCCCGTTGTTGACTAAACGCCTTCAACAGCTTCCTGAAACTGAGAAAGTCATAGTTGCATTTCCTGATGATGGAGCCTGGAAGCGTTTCCATAAGCTGTTGGATCATTATCCCACGGTTGTGTGTACAAAGGTTCGTGAAGGCGATAAGAGAATAGTCAGGCTGAAGGAAGGAAACCCTGCTGGTTGTCACGTTGTTATCGTGGATGATCTTGTGCAGTCTGGGGGTACACTCATTGAATGCCAGAAAGTATTGGCAGCGCATGGAGCTGTGAAGGTGAGTGCTTATGTAACTCATGGTGTCTTCCCAAAGAGCTCGTGGGAGCGTTTCACCCACAAGAAGAACGGATTAGAAGAAGCGTTTGCTTACTTCTGGATCACGGATTCTTGTCCACAGACGGTTAAGGCCATCGGAAACAAGGCTCCTTTCGAAGTCTTGAGCCTCGCTGGATCCATTGCTGATGCTCTGCAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pribosyltran Pribosyltran_N

Protein Analysis

337

Amino Acids

37.56

Weight (kDa)

6.01

Isoelectric Point (pI)

54.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pribosyltran_N PF13793 30 - 141 2.8e-06 N-terminal domain of ribose phosphate pyrophosphokinase
Pribosyltran PF00156 228 - 281 6.4e-08 Phosphoribosyl transferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 168
AccII CGCG 1 cut(s) 444
AciI CCGC 2 cut(s) 132, 444
AclWI GGATC 4 cut(s) 648, 920, 981, 994
AcuI CTGAAG 1 cut(s) 722
AcyI GRCGYC 1 cut(s) 51
AdeI CACNNNGTG 1 cut(s) 446
AfaI GTAC 3 cut(s) 46, 664, 766
AfiI CCNNNNNNNGG 3 cut(s) 168, 414, 608
AgsI TTSAA 2 cut(s) 563, 776
AhlI ACTAGT 1 cut(s) 455
AjnI CCWGG 1 cut(s) 614
AleI CACNNNNGTG 2 cut(s) 335, 656
AluBI AGCT 4 cut(s) 568, 634, 806, 852
AluI AGCT 4 cut(s) 568, 634, 806, 852
Alw21I GWGCWC 1 cut(s) 854
Alw26I GTCTC 3 cut(s) 26, 427, 524
AlwI GGATC 4 cut(s) 648, 920, 981, 994
AoxI GGCC 2 cut(s) 229, 942
ApeKI GCWGC 2 cut(s) 14, 794
Asp700I GAANNNNTTC 1 cut(s) 623
AspLEI GCGC 1 cut(s) 799
AspS9I GGNCC 1 cut(s) 449
AsuHPI GGTGA 2 cut(s) 826, 859
AsuII TTCGAA 1 cut(s) 966
AvaII GGWCC 1 cut(s) 449
BamHI GGATCC 1 cut(s) 986
BanII GRGCYC 1 cut(s) 854
BauI CACGAG 1 cut(s) 853
BbsI GAAGAC 1 cut(s) 832
Bbv12I GWGCWC 1 cut(s) 854
BbvI GCAGC 2 cut(s) 26, 806
BccI CCATC 5 cut(s) 62, 170, 179, 602, 953
BcgI CGANNNNNNTGC 2 cut(s) 98, 132
BciT130I CCWGG 1 cut(s) 616
BclI TGATCA 1 cut(s) 142
BcoDI GTCTC 3 cut(s) 26, 427, 524
BcuI ACTAGT 1 cut(s) 455
BfaI CTAG 1 cut(s) 456
BfmI CTRYAG 1 cut(s) 1004
BglII AGATCT 1 cut(s) 285
BisI GCNGC 3 cut(s) 15, 132, 795
BlsI GCNGC 3 cut(s) 16, 133, 796
Bme1390I CCNGG 1 cut(s) 616
Bme18I GGWCC 1 cut(s) 449
BmgT120I GGNCC 1 cut(s) 449
BmiI GGNNCC 4 cut(s) 361, 613, 960, 988
BmrFI CCNGG 1 cut(s) 616
BmsI GCATC 1 cut(s) 988
BpiI GAAGAC 1 cut(s) 832
BplI GAGNNNNNCTC 2 cut(s) 272, 304
BpmI CTGGAG 1 cut(s) 190
Bpu14I TTCGAA 1 cut(s) 966
BpuEI CTTGAG 1 cut(s) 994
BsaBI GATNNNNATC 1 cut(s) 645
BsaHI GRCGYC 1 cut(s) 51
BsaI GGTCTC 1 cut(s) 26
BsaJI CCNNGG 3 cut(s) 226, 408, 651
Bsc4I CCNNNNNNNGG 3 cut(s) 168, 414, 608
Bse1I ACTGG 3 cut(s) 173, 361, 538
Bse3DI GCAATG 1 cut(s) 990
Bse8I GATNNNNATC 1 cut(s) 645
BseBI CCWGG 1 cut(s) 616
BseDI CCNNGG 3 cut(s) 226, 408, 651
BseGI GGATG 1 cut(s) 748
BseJI GATNNNNATC 1 cut(s) 645
BseLI CCNNNNNNNGG 3 cut(s) 168, 414, 608
BseMI GCAATG 1 cut(s) 990
BseMII CTCAG 1 cut(s) 570
BseNI ACTGG 3 cut(s) 173, 361, 538
BseRI GAGGAG 1 cut(s) 187
BseXI GCAGC 2 cut(s) 26, 806
BsgI GTGCAG 1 cut(s) 773
Bsh1236I CGCG 1 cut(s) 444
BshFI GGCC 2 cut(s) 231, 944
BsiHKAI GWGCWC 1 cut(s) 854
BslI CCNNNNNNNGG 3 cut(s) 168, 414, 608
BsmAI GTCTC 3 cut(s) 26, 427, 524
BsmI GAATGC 1 cut(s) 782
BsnI GGCC 2 cut(s) 231, 944
Bso31I GGTCTC 1 cut(s) 26
Bsp119I TTCGAA 1 cut(s) 966
Bsp1286I GDGCHC 1 cut(s) 854
Bsp1407I TGTACA 2 cut(s) 44, 662
Bsp143I GATC 7 cut(s) 142, 285, 508, 640, 745, 912, 986
Bsp19I CCATGG 1 cut(s) 408
BspACI CCGC 2 cut(s) 132, 444
BspANI GGCC 2 cut(s) 231, 944
BspCNI CTCAG 1 cut(s) 571
BspFNI CGCG 1 cut(s) 444
BspLI GGNNCC 4 cut(s) 361, 613, 960, 988
BspMAI CTGCAG 1 cut(s) 1008
BspPI GGATC 4 cut(s) 648, 920, 981, 994
BspT104I TTCGAA 1 cut(s) 966
BspTNI GGTCTC 1 cut(s) 26
BsrDI GCAATG 1 cut(s) 990
BsrGI TGTACA 2 cut(s) 44, 662
BsrI ACTGG 3 cut(s) 173, 361, 538
BssECI CCNNGG 3 cut(s) 226, 408, 651
BssMI GATC 7 cut(s) 142, 285, 508, 640, 745, 912, 986
BssNI GRCGYC 1 cut(s) 51
BssSI CACGAG 1 cut(s) 853
BssT1I CCWWGG 1 cut(s) 408
Bst2BI CACGAG 1 cut(s) 853
Bst2UI CCWGG 1 cut(s) 616
Bst4CI ACNGT 2 cut(s) 655, 937
Bst6I CTCTTC 1 cut(s) 372
BstACI GRCGYC 1 cut(s) 51
BstAUI TGTACA 2 cut(s) 44, 662
BstBI TTCGAA 1 cut(s) 966
BstC8I GCNNGC 2 cut(s) 121, 233
BstDEI CTNAG 3 cut(s) 6, 100, 579
BstDSI CCRYGG 2 cut(s) 408, 651
BstF5I GGATG 1 cut(s) 748
BstFNI CGCG 1 cut(s) 444
BstHHI GCGC 1 cut(s) 799
BstKTI GATC 7 cut(s) 145, 288, 511, 643, 748, 915, 989
BstMAI GTCTC 3 cut(s) 26, 427, 524
BstMBI GATC 7 cut(s) 142, 285, 508, 640, 745, 912, 986
BstMWI GCNNNNNNNGC 3 cut(s) 105, 248, 803
BstNI CCWGG 1 cut(s) 616
BstSCI CCNGG 1 cut(s) 614
BstSFI CTRYAG 1 cut(s) 1004
BstUI CGCG 1 cut(s) 444
BstV1I GCAGC 2 cut(s) 26, 806
BstV2I GAAGAC 1 cut(s) 832
BstX2I RGATCY 2 cut(s) 285, 986
BstYI RGATCY 2 cut(s) 285, 986
BsuRI GGCC 2 cut(s) 231, 944
BtgI CCRYGG 2 cut(s) 408, 651
BtgZI GCGATG 1 cut(s) 112
BtsCI GGATG 1 cut(s) 748
BtsIMutI CAGTG 1 cut(s) 354
Cac8I GCNNGC 2 cut(s) 121, 233
CfoI GCGC 1 cut(s) 799
Cfr13I GGNCC 1 cut(s) 449
CseI GACGC 2 cut(s) 59, 312
Csp6I GTAC 3 cut(s) 45, 663, 765
CviAII CATG 5 cut(s) 28, 218, 409, 800, 833
CviQI GTAC 3 cut(s) 45, 663, 765
DdeI CTNAG 3 cut(s) 6, 100, 579
DpnI GATC 7 cut(s) 144, 287, 510, 642, 747, 914, 988
DpnII GATC 7 cut(s) 142, 285, 508, 640, 745, 912, 986
DraIII CACNNNGTG 1 cut(s) 446
Eam1104I CTCTTC 1 cut(s) 372
EarI CTCTTC 1 cut(s) 372
Ecl136II GAGCTC 1 cut(s) 852
Eco130I CCWWGG 1 cut(s) 408
Eco24I GRGCYC 1 cut(s) 854
Eco31I GGTCTC 1 cut(s) 26
Eco32I GATATC 1 cut(s) 223
Eco47I GGWCC 1 cut(s) 449
Eco53kI GAGCTC 1 cut(s) 852
Eco57I CTGAAG 1 cut(s) 722
EcoICRI GAGCTC 1 cut(s) 852
EcoRII CCWGG 1 cut(s) 614
EcoRV GATATC 1 cut(s) 223
EcoT14I CCWWGG 1 cut(s) 408
EcoT38I GRGCYC 1 cut(s) 854
ErhI CCWWGG 1 cut(s) 408
FaeI CATG 5 cut(s) 31, 221, 412, 803, 836
FaiI YATR 9 cut(s) 29, 219, 410, 471, 590, 630, 801, 825, 834
FatI CATG 5 cut(s) 27, 217, 408, 799, 832
FbaI TGATCA 1 cut(s) 142
Fnu4HI GCNGC 3 cut(s) 15, 132, 795
FokI GGATG 1 cut(s) 755
FriOI GRGCYC 1 cut(s) 854
Fsp4HI GCNGC 3 cut(s) 15, 132, 795
FspBI CTAG 1 cut(s) 456
GlaI GCGC 1 cut(s) 798
GluI GCNGC 3 cut(s) 15, 132, 795
GsuI CTGGAG 1 cut(s) 190
HaeIII GGCC 2 cut(s) 231, 944
HgaI GACGC 2 cut(s) 59, 312
HhaI GCGC 1 cut(s) 799
Hin1I GRCGYC 1 cut(s) 51
Hin1II CATG 5 cut(s) 31, 221, 412, 803, 836
Hin6I GCGC 1 cut(s) 797
HinP1I GCGC 1 cut(s) 797
HincII GTYRAC 1 cut(s) 549
HindII GTYRAC 1 cut(s) 549
HinfI GANTC 5 cut(s) 137, 189, 196, 537, 920
HphI GGTGA 2 cut(s) 826, 859
Hpy166II GTNNAC 4 cut(s) 549, 663, 767, 929
Hpy188I TCNGA 6 cut(s) 7, 64, 142, 227, 453, 950
Hpy188III TCNNGA 6 cut(s) 193, 572, 602, 674, 910, 973
Hpy8I GTNNAC 4 cut(s) 549, 663, 767, 929
HpyAV CCTTC 7 cut(s) 337, 377, 569, 671, 697, 701, 805
HpyCH4III ACNGT 2 cut(s) 655, 937
HpyCH4IV ACGT 2 cut(s) 237, 729
HpyCH4V TGCA 4 cut(s) 487, 596, 754, 1006
HpyF10VI GCNNNNNNNGC 3 cut(s) 105, 248, 803
HpyF3I CTNAG 3 cut(s) 6, 100, 579
HpySE526I ACGT 2 cut(s) 237, 729
Hsp92I GRCGYC 1 cut(s) 51
Hsp92II CATG 5 cut(s) 31, 221, 412, 803, 836
HspAI GCGC 1 cut(s) 797
Ksp22I TGATCA 1 cut(s) 142
Kzo9I GATC 7 cut(s) 142, 285, 508, 640, 745, 912, 986
LmnI GCTCC 6 cut(s) 309, 365, 611, 803, 859, 964
Lsp1109I GCAGC 2 cut(s) 26, 806
LweI GCATC 1 cut(s) 988
MaeI CTAG 1 cut(s) 456
MaeII ACGT 2 cut(s) 237, 729
MaeIII GTNAC 2 cut(s) 725, 826
MalI GATC 7 cut(s) 144, 287, 510, 642, 747, 914, 988
MboI GATC 7 cut(s) 142, 285, 508, 640, 745, 912, 986
MboII GAAGA 9 cut(s) 85, 88, 122, 340, 389, 509, 832, 889, 902
MflI RGATCY 2 cut(s) 285, 986
MhlI GDGCHC 1 cut(s) 854
MluCI AATT 1 cut(s) 65
MmeI TCCRAC 2 cut(s) 476, 618
MnlI CCTC 5 cut(s) 165, 221, 318, 373, 989
MroXI GAANNNNTTC 1 cut(s) 623
MseI TTAA 1 cut(s) 939
MslI CAYNNNNRTG 2 cut(s) 335, 656
MspA1I CMGCKG 1 cut(s) 134
MspR9I CCNGG 1 cut(s) 616
Mva1269I GAATGC 1 cut(s) 782
MvaI CCWGG 1 cut(s) 616
MvnI CGCG 1 cut(s) 444
MwoI GCNNNNNNNGC 3 cut(s) 105, 248, 803
NcoI CCATGG 1 cut(s) 408
NdeII GATC 7 cut(s) 142, 285, 508, 640, 745, 912, 986
NlaIII CATG 5 cut(s) 31, 221, 412, 803, 836
NlaIV GGNNCC 4 cut(s) 361, 613, 960, 988
NmuCI GTSAC 1 cut(s) 725
NspV TTCGAA 1 cut(s) 966
OliI CACNNNNGTG 2 cut(s) 335, 656
PcsI WCGNNNNNNNCGW 1 cut(s) 735
PctI GAATGC 1 cut(s) 782
PdmI GAANNNNTTC 1 cut(s) 623
PfeI GAWTC 5 cut(s) 137, 189, 196, 537, 920
PflMI CCANNNNNTGG 1 cut(s) 168
PkrI GCNGC 3 cut(s) 16, 133, 796
Psp124BI GAGCTC 1 cut(s) 854
Psp6I CCWGG 1 cut(s) 614
PspGI CCWGG 1 cut(s) 614
PspN4I GGNNCC 4 cut(s) 361, 613, 960, 988
PspPI GGNCC 1 cut(s) 449
PstI CTGCAG 1 cut(s) 1008
PsuI RGATCY 2 cut(s) 285, 986
RsaI GTAC 3 cut(s) 46, 664, 766
RsaNI GTAC 3 cut(s) 45, 663, 765
RseI CAYNNNNRTG 2 cut(s) 335, 656
SacI GAGCTC 1 cut(s) 854
SaqAI TTAA 1 cut(s) 939
SatI GCNGC 3 cut(s) 15, 132, 795
Sau3AI GATC 7 cut(s) 142, 285, 508, 640, 745, 912, 986
Sau96I GGNCC 1 cut(s) 449
ScrFI CCNGG 1 cut(s) 616
SduI GDGCHC 1 cut(s) 854
SfaNI GCATC 1 cut(s) 988
SfcI CTRYAG 1 cut(s) 1004
SfuI TTCGAA 1 cut(s) 966
SinI GGWCC 1 cut(s) 449
SmiMI CAYNNNNRTG 2 cut(s) 335, 656
SmlI CTYRAG 1 cut(s) 973
SmoI CTYRAG 1 cut(s) 973
SpeI ACTAGT 1 cut(s) 455
Sse9I AATT 1 cut(s) 65
SsiI CCGC 2 cut(s) 132, 444
SspMI CTAG 1 cut(s) 456
SstI GAGCTC 1 cut(s) 854
StyD4I CCNGG 1 cut(s) 614
StyI CCWWGG 1 cut(s) 408
TaaI ACNGT 2 cut(s) 655, 937
TaiI ACGT 2 cut(s) 240, 732
TaqI TCGA 2 cut(s) 310, 966
TasI AATT 1 cut(s) 65
TatI WGTACW 2 cut(s) 44, 662
TauI GCSGC 1 cut(s) 134
TfiI GAWTC 5 cut(s) 137, 189, 196, 537, 920
Tru1I TTAA 1 cut(s) 939
Tru9I TTAA 1 cut(s) 939
TscAI CASTG 1 cut(s) 361
TseFI GTSAC 1 cut(s) 725
TseI GCWGC 2 cut(s) 14, 794
Tsp45I GTSAC 1 cut(s) 725
TspDTI ATGAA 2 cut(s) 74, 243
TspGWI ACGGA 2 cut(s) 897, 932
TspRI CASTG 1 cut(s) 361
Van91I CCANNNNNTGG 1 cut(s) 168
VpaK11BI GGWCC 1 cut(s) 449
XcmI CCANNNNNNNNNTGG 2 cut(s) 25, 852
XmnI GAANNNNTTC 1 cut(s) 623
XspI CTAG 1 cut(s) 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.