Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0009478

Physical Location & Seq

Genomic Coordinates Forward (+)

11978282 .. 11981231

Gene Structure 2950 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1151500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGACAAGTCACAGCAGAAGCAGCTCTACCTCTTCTACTGCGCCGAGTGCGAAGACCTTGCTCGCCAGGTCGCTTCTCAGTCCGACCACATCATCCTCCAGACCATCAAATGGAGGAATTTTGATGATGGATTTCCAAACATTTTTATAAACAATGCACAAGATCTTCGAGGCCAACATGTTGCCTTTCTGGCATCCTTCAGCTCCCAAGGAGTTATATTTGAGCAGCTTTCTGTAATATATGCACTGCCCCGGCTGTTTGTTGCGTCCTTCACATTAGTATTGCCTTTCTTTCCTACTGGTTCCTTTGAAAGAATGGAAGAAGAAGGGGACGTAGCAACTGCGTTTACCATGGCGAGAATGTTGTCAAATATTCCCATATCCAGGGGTGGCCCAACCAGTTTAGTCATCTATGACATCCATGCTTTACAGGAAAGGTTTTATTTTGGTGATCATGTTTTGCCTTTGTTTGAGACTGGAATTCCACTGTTAAAGCAGCGTCTCCACCAGCTTTCTGACTCCGATAAGATAGTTGTTGCATTTCCCGATGATGGAGCATGGAAGCGATTCCACAAGCAGTTGGATCATTTTCCCATGGTGGTGTGCAATAAGGTTCGTGAAGGTGACAAGAGGATAGTTCGGATAAAAGAGGGAAATCCTGCTGGTTGTCATGTAGTCATCGTCGATGACTTAGTGCAATCTGGCAGCACCCTAATTGAGTGCCAGAAAGTTTTGGCAGCTCATGGTGCAGCCAAGGTTAGCTCTTATGTAACCCATGGTGTATTTCCTAAACGCTCATGGGAGAGGTTCACTCACAAGGATGATGGCTTGGAGAAGGCATTTGCGTACTTTTGGATCACGGATTCCTGCCCGCTTACTGTCAAAGCCATAGCTAATAAAGCTCCCTTCGAGGTGTTAAGTCTTGCAGGTTCCATTGCTGATGCTCTACAGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pribosyltran Pribosyltran_N

Protein Analysis

319

Amino Acids

35.75

Weight (kDa)

6.26

Isoelectric Point (pI)

51.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pribosyltran_N	PF13793	10 - 124	4.7e-08	N-terminal domain of ribose phosphate pyrophosphokinase
Pribosyltran	PF00156	208 - 259	1.9e-08	Phosphoribosyl transferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42910
fragaria_vesca	FvH4_6g38260 FvH4_6g38260 FvH4_6g38260 FvH4_6g38260 FvH4_6g38260
malus_domestica	MD09G1151500.v1.1 MD17G1139200.v1.1
prunus_persica	Prupe.3G173100_v2.0.a1 Prupe.3G173100_v2.0.a1 Prupe.3G173100_v2.0.a1
pyrus_communis	pycom17g13230
rosa_chinensis	RchiOBHm_Chr2g0151521
rosa_laevigata	RLG00000020557
rosa_multiflora	Rmu_sc0000940.1_g000022
rosa_roxburghii	Rroxscaffold_2G00096380
rosa_rugosa	Rorug02G0426900
rosa_samantha	Rh2AG487600 Rh2BG500000 Rh2CG474100 Rh2DG511200
rosa_wichuraiana	Rw2G039970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	149
Acc36I	ACCTGC	1 cut(s)	917
AccB7I	CCANNNNNTGG	1 cut(s)	111
AciI	CCGC	1 cut(s)	872
AclWI	GGATC	2 cut(s)	591, 863
AcsI	RAATTY	2 cut(s)	118, 480
AcuI	CTGAAG	1 cut(s)	184
AfaI	GTAC	1 cut(s)	848
AfiI	CCNNNNNNNGG	3 cut(s)	111, 384, 551
AflIII	ACRYGT	1 cut(s)	178
AgsI	TTSAA	1 cut(s)	311
AjnI	CCWGG	2 cut(s)	66, 383
AluBI	AGCT	8 cut(s)	25, 204, 229, 511, 740, 762, 893, 902
AluI	AGCT	8 cut(s)	25, 204, 229, 511, 740, 762, 893, 902
Alw26I	GTCTC	2 cut(s)	467, 506
AlwI	GGATC	2 cut(s)	591, 863
AoxI	GGCC	2 cut(s)	172, 391
ApeKI	GCWGC	6 cut(s)	22, 226, 496, 705, 737, 749
ApoI	RAATTY	2 cut(s)	118, 480
Asp700I	GAANNNNTTC	1 cut(s)	566
AspLEI	GCGC	1 cut(s)	44
AspS9I	GGNCC	1 cut(s)	392
AsuC2I	CCSGG	1 cut(s)	253
AsuHPI	GGTGA	2 cut(s)	461, 635
BarI	GAAGNNNNNNTAC	2 cut(s)	11, 43
BbsI	GAAGAC	1 cut(s)	60
BbvI	GCAGC	6 cut(s)	34, 238, 508, 717, 749, 761
BccI	CCATC	4 cut(s)	113, 122, 545, 818
BcgI	CGANNNNNNTGC	2 cut(s)	41, 75
BciT130I	CCWGG	2 cut(s)	68, 385
BclI	TGATCA	1 cut(s)	451
BcnI	CCSGG	1 cut(s)	253
BcoDI	GTCTC	2 cut(s)	467, 506
BfmI	CTRYAG	1 cut(s)	947
BfuAI	ACCTGC	1 cut(s)	917
BglI	GCCNNNNNGGC	1 cut(s)	191
BglII	AGATCT	1 cut(s)	163
BisI	GCNGC	6 cut(s)	23, 227, 497, 706, 738, 750
BlsI	GCNGC	6 cut(s)	24, 228, 498, 707, 739, 751
Bme1390I	CCNGG	3 cut(s)	68, 253, 385
BmgT120I	GGNCC	1 cut(s)	392
BmiI	GGNNCC	2 cut(s)	304, 931
BmrFI	CCNGG	3 cut(s)	68, 253, 385
BmsI	GCATC	2 cut(s)	203, 931
BpiI	GAAGAC	1 cut(s)	60
BplI	GAGNNNNNCTC	2 cut(s)	796, 828
BpmI	CTGGAG	1 cut(s)	83
BpuMI	CCSGG	1 cut(s)	253
BsaJI	CCNNGG	7 cut(s)	208, 251, 351, 384, 594, 753, 775
Bsc4I	CCNNNNNNNGG	3 cut(s)	111, 384, 551
Bse1I	ACTGG	3 cut(s)	304, 399, 481
Bse3DI	GCAATG	1 cut(s)	933
BseBI	CCWGG	2 cut(s)	68, 385
BseDI	CCNNGG	7 cut(s)	208, 251, 351, 384, 594, 753, 775
BseGI	GGATG	4 cut(s)	93, 194, 417, 826
BseLI	CCNNNNNNNGG	3 cut(s)	111, 384, 551
BseMI	GCAATG	1 cut(s)	933
BseMII	CTCAG	1 cut(s)	92
BseNI	ACTGG	3 cut(s)	304, 399, 481
BseXI	GCAGC	6 cut(s)	34, 238, 508, 717, 749, 761
BsgI	GTGCAG	1 cut(s)	768
BshFI	GGCC	2 cut(s)	174, 393
BsiSI	CCGG	1 cut(s)	253
BslFI	GGGAC	1 cut(s)	344
BslI	CCNNNNNNNGG	3 cut(s)	111, 384, 551
BsmAI	GTCTC	2 cut(s)	467, 506
BsmBI	CGTCTC	1 cut(s)	506
BsmFI	GGGAC	1 cut(s)	344
BsnI	GGCC	2 cut(s)	174, 393
Bsp143I	GATC	4 cut(s)	163, 451, 583, 855
Bsp19I	CCATGG	3 cut(s)	351, 594, 775
BspACI	CCGC	1 cut(s)	872
BspANI	GGCC	2 cut(s)	174, 393
BspCNI	CTCAG	1 cut(s)	91
BspLI	GGNNCC	2 cut(s)	304, 931
BspMI	ACCTGC	1 cut(s)	917
BspPI	GGATC	2 cut(s)	591, 863
BsrDI	GCAATG	1 cut(s)	933
BsrI	ACTGG	3 cut(s)	304, 399, 481
BssECI	CCNNGG	7 cut(s)	208, 251, 351, 384, 594, 753, 775
BssMI	GATC	4 cut(s)	163, 451, 583, 855
BssT1I	CCWWGG	5 cut(s)	208, 351, 594, 753, 775
Bst2UI	CCWGG	2 cut(s)	68, 385
Bst4CI	ACNGT	2 cut(s)	489, 880
Bst6I	CTCTTC	1 cut(s)	38
BstC8I	GCNNGC	2 cut(s)	64, 872
BstDEI	CTNAG	2 cut(s)	78, 691
BstDSI	CCRYGG	3 cut(s)	351, 594, 775
BstF5I	GGATG	4 cut(s)	93, 194, 417, 826
BstHHI	GCGC	1 cut(s)	44
BstKTI	GATC	4 cut(s)	166, 454, 586, 858
BstMAI	GTCTC	2 cut(s)	467, 506
BstMBI	GATC	4 cut(s)	163, 451, 583, 855
BstMWI	GCNNNNNNNGC	5 cut(s)	22, 48, 191, 746, 899
BstNI	CCWGG	2 cut(s)	68, 385
BstNSI	RCATGY	1 cut(s)	182
BstSCI	CCNGG	3 cut(s)	66, 251, 383
BstSFI	CTRYAG	1 cut(s)	947
BstV1I	GCAGC	6 cut(s)	34, 238, 508, 717, 749, 761
BstV2I	GAAGAC	1 cut(s)	60
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
BsuRI	GGCC	2 cut(s)	174, 393
BtgI	CCRYGG	3 cut(s)	351, 594, 775
BtsCI	GGATG	4 cut(s)	93, 194, 417, 826
BtsI	GCAGTG	1 cut(s)	245
BtsIMutI	CAGTG	2 cut(s)	245, 485
BveI	ACCTGC	1 cut(s)	917
Cac8I	GCNNGC	2 cut(s)	64, 872
CfoI	GCGC	1 cut(s)	44
Cfr13I	GGNCC	1 cut(s)	392
CseI	GACGC	2 cut(s)	255, 488
Csp6I	GTAC	1 cut(s)	847
CviQI	GTAC	1 cut(s)	847
DdeI	CTNAG	2 cut(s)	78, 691
DpnI	GATC	4 cut(s)	165, 453, 585, 857
DpnII	GATC	4 cut(s)	163, 451, 583, 855
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
Eco130I	CCWWGG	5 cut(s)	208, 351, 594, 753, 775
Eco57I	CTGAAG	1 cut(s)	184
EcoRI	GAATTC	1 cut(s)	480
EcoRII	CCWGG	2 cut(s)	66, 383
EcoT14I	CCWWGG	5 cut(s)	208, 351, 594, 753, 775
ErhI	CCWWGG	5 cut(s)	208, 351, 594, 753, 775
Esp3I	CGTCTC	1 cut(s)	506
FaqI	GGGAC	1 cut(s)	344
FauI	CCCGC	1 cut(s)	879
FbaI	TGATCA	1 cut(s)	451
Fnu4HI	GCNGC	6 cut(s)	23, 227, 497, 706, 738, 750
FokI	GGATG	4 cut(s)	80, 181, 404, 833
Fsp4HI	GCNGC	6 cut(s)	23, 227, 497, 706, 738, 750
GlaI	GCGC	1 cut(s)	43
GluI	GCNGC	6 cut(s)	23, 227, 497, 706, 738, 750
GsuI	CTGGAG	1 cut(s)	83
HaeIII	GGCC	2 cut(s)	174, 393
HapII	CCGG	1 cut(s)	253
HgaI	GACGC	2 cut(s)	255, 488
HhaI	GCGC	1 cut(s)	44
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HinfI	GANTC	3 cut(s)	518, 567, 863
HpaII	CCGG	1 cut(s)	253
HphI	GGTGA	2 cut(s)	461, 635
Hpy166II	GTNNAC	2 cut(s)	348, 810
Hpy188I	TCNGA	4 cut(s)	85, 517, 523, 642
Hpy188III	TCNNGA	3 cut(s)	100, 545, 617
Hpy8I	GTNNAC	2 cut(s)	348, 810
Hpy99I	CGWCG	1 cut(s)	686
HpyAV	CCTTC	6 cut(s)	208, 280, 320, 614, 829, 916
HpyCH4III	ACNGT	2 cut(s)	489, 880
HpyCH4IV	ACGT	1 cut(s)	333
HpyCH4V	TGCA	7 cut(s)	158, 245, 539, 606, 697, 749, 926
HpyF10VI	GCNNNNNNNGC	5 cut(s)	22, 48, 191, 746, 899
HpyF3I	CTNAG	2 cut(s)	78, 691
HpySE526I	ACGT	1 cut(s)	333
HspAI	GCGC	1 cut(s)	42
Ksp22I	TGATCA	1 cut(s)	451
Kzo9I	GATC	4 cut(s)	163, 451, 583, 855
LmnI	GCTCC	3 cut(s)	209, 554, 907
Lsp1109I	GCAGC	6 cut(s)	34, 238, 508, 717, 749, 761
LweI	GCATC	2 cut(s)	203, 931
MaeII	ACGT	1 cut(s)	333
MaeIII	GTNAC	3 cut(s)	9, 623, 769
MalI	GATC	4 cut(s)	165, 453, 585, 857
MboI	GATC	4 cut(s)	163, 451, 583, 855
MboII	GAAGA	5 cut(s)	25, 65, 158, 332, 335
MflI	RGATCY	1 cut(s)	163
MluCI	AATT	3 cut(s)	118, 480, 714
MlyI	GAGTC	1 cut(s)	512
MmeI	TCCRAC	2 cut(s)	108, 561
MnlI	CCTC	8 cut(s)	41, 107, 108, 164, 624, 643, 798, 904
MroXI	GAANNNNTTC	1 cut(s)	566
MseI	TTAA	2 cut(s)	491, 917
MslI	CAYNNNNRTG	2 cut(s)	599, 819
MspI	CCGG	1 cut(s)	253
MspR9I	CCNGG	3 cut(s)	68, 253, 385
MvaI	CCWGG	2 cut(s)	68, 385
MwoI	GCNNNNNNNGC	5 cut(s)	22, 48, 191, 746, 899
NciI	CCSGG	1 cut(s)	253
NcoI	CCATGG	3 cut(s)	351, 594, 775
NdeII	GATC	4 cut(s)	163, 451, 583, 855
NlaIV	GGNNCC	2 cut(s)	304, 931
NmeAIII	GCCGAG	1 cut(s)	70
NmuCI	GTSAC	2 cut(s)	9, 623
NspI	RCATGY	1 cut(s)	182
PciI	ACATGT	1 cut(s)	178
PdmI	GAANNNNTTC	1 cut(s)	566
PfeI	GAWTC	2 cut(s)	567, 863
PflMI	CCANNNNNTGG	1 cut(s)	111
PkrI	GCNGC	6 cut(s)	24, 228, 498, 707, 739, 751
PleI	GAGTC	1 cut(s)	512
PpsI	GAGTC	1 cut(s)	512
PscI	ACATGT	1 cut(s)	178
PsiI	TTATAA	1 cut(s)	149
Psp6I	CCWGG	2 cut(s)	66, 383
PspGI	CCWGG	2 cut(s)	66, 383
PspN4I	GGNNCC	2 cut(s)	304, 931
PspPI	GGNCC	1 cut(s)	392
PsuI	RGATCY	1 cut(s)	163
RsaI	GTAC	1 cut(s)	848
RsaNI	GTAC	1 cut(s)	847
RseI	CAYNNNNRTG	2 cut(s)	599, 819
SaqAI	TTAA	2 cut(s)	491, 917
SatI	GCNGC	6 cut(s)	23, 227, 497, 706, 738, 750
Sau3AI	GATC	4 cut(s)	163, 451, 583, 855
Sau96I	GGNCC	1 cut(s)	392
SchI	GAGTC	1 cut(s)	512
ScrFI	CCNGG	3 cut(s)	68, 253, 385
SfaNI	GCATC	2 cut(s)	203, 931
SfcI	CTRYAG	1 cut(s)	947
SmiMI	CAYNNNNRTG	2 cut(s)	599, 819
Sse9I	AATT	3 cut(s)	118, 480, 714
SsiI	CCGC	1 cut(s)	872
SspI	AATATT	1 cut(s)	373
StyD4I	CCNGG	3 cut(s)	66, 251, 383
StyI	CCWWGG	5 cut(s)	208, 351, 594, 753, 775
TaaI	ACNGT	2 cut(s)	489, 880
TaiI	ACGT	1 cut(s)	336
TaqI	TCGA	3 cut(s)	169, 684, 909
TasI	AATT	3 cut(s)	118, 480, 714
TfiI	GAWTC	2 cut(s)	567, 863
Tru1I	TTAA	2 cut(s)	491, 917
Tru9I	TTAA	2 cut(s)	491, 917
TscAI	CASTG	2 cut(s)	252, 492
TseFI	GTSAC	2 cut(s)	9, 623
TseI	GCWGC	6 cut(s)	22, 226, 496, 705, 737, 749
Tsp45I	GTSAC	2 cut(s)	9, 623
TspGWI	ACGGA	1 cut(s)	875
TspRI	CASTG	2 cut(s)	252, 492
Van91I	CCANNNNNTGG	1 cut(s)	111
XapI	RAATTY	2 cut(s)	118, 480
XceI	RCATGY	1 cut(s)	182
XmnI	GAANNNNTTC	1 cut(s)	566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.