FvH4_6g38260

Ribose-phosphate pyrophosphokinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0009478
Physical Location & Seq
Reverse (-)
30267446 .. 30272319
4874 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g38260.t4

Sequence Viewer

Length: 960 bp
ATGGCTATGGACAAGTCACCGAAGAAGCAAGTCTACTTGTTCTACTGCGCCGAATGCGAAGACCTTGCTCGGCAGGTCGCTTCTCAGTCGGACCTCATTACTCTCCAGACCATCAAATGGAGGAACTTTGACGATGGGTTTCCAAACATTTTCATCAACAATGCACAAGACCTTCGAGGCCAACATGTTGCCTTTCTTGCGTCCTTCAGCTCCCAAGGTGTTATCTTTGAGCAGCTGTCTGTAATATATGCACTCCCCAAGCTGTTTGTTGCATCCTTCTCTTTAGTGTTGCCTTTCTTCCCAACTGGTTCCTTTGAACGAATGGAAGAAGAAGGGGATGTTGCAACTGCATTTACCATGGCGAGAATGTTGTCAAACATTCCCATATCAAAAGGTGGCCCAACCAGTTTAGTCATTTATGACATACATGCTTTGCAGGAGAGATTTTACTTTGGGGATCATGTTTTGCCTTTGTTTGAGACTGGAATCCCTTTGTTAAAGGAACGCCTCCACCAGCTTCCTGACTCTGATAAGATAGTTGTTGCATTTCCTGATGATGGAGCTTGGAAGCGATTCCACAAGCAGTTGGATCATTTTCCCATGGTTGTGTGTAACAAGGTTCGTGAAGGCGATAAGAGGATAGTTCGAATCAAAGAGGGAAATCCTGCAGGGTTTCATGTAGTCATTGTTGATGACCTGGTGCAATCTGGAGGCACCTTAATTGAGTGCCAGAAAGTTTTGGCAGCTCATGGTGCAGCCAAGGTTAGTGCTTATGTCACCCATGGAGTTTTTCCTAAGCGCTCATGGGAGCGTTTCACTCACAAGAATGGAGAGTTGGAGAATCCGTTTGCCTATTTTTGGATCACAGATTCCTGCCCGCTTACTGTCACAGCCGTTAAAAATAAAGCACCCTTTGAGATCTTAAGTCTAGCAGGATCCATTGCTGATGCTCTACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pribosyltran Pribosyltran_N

Protein Analysis

320

Amino Acids

35.76

Weight (kDa)

6.21

Isoelectric Point (pI)

47.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pribosyltran_N PF13793 12 - 126 3.2e-07 N-terminal domain of ribose phosphate pyrophosphokinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 64
AccB1I GGYRCC 1 cut(s) 713
AccB7I CCANNNNNTGG 1 cut(s) 117
AccI GTMKAC 1 cut(s) 33
AciI CCGC 1 cut(s) 878
AclWI GGATC 5 cut(s) 465, 597, 869, 930, 943
AcuI CTGAAG 1 cut(s) 190
AfeI AGCGCT 1 cut(s) 800
AfiI CCNNNNNNNGG 3 cut(s) 117, 557, 858
AflII CTTAAG 1 cut(s) 922
AflIII ACRYGT 1 cut(s) 184
AgsI TTSAA 1 cut(s) 317
AjnI CCWGG 1 cut(s) 696
AjuI GAANNNNNNNTTGG 2 cut(s) 818, 850
AluBI AGCT 6 cut(s) 210, 235, 262, 517, 563, 746
AluI AGCT 6 cut(s) 210, 235, 262, 517, 563, 746
Alw26I GTCTC 1 cut(s) 473
AlwI GGATC 5 cut(s) 465, 597, 869, 930, 943
Aor51HI AGCGCT 1 cut(s) 800
AoxI GGCC 2 cut(s) 178, 397
ApeKI GCWGC 3 cut(s) 232, 743, 755
Asp700I GAANNNNTTC 1 cut(s) 572
AspLEI GCGC 2 cut(s) 50, 801
AspS9I GGNCC 2 cut(s) 91, 398
AsuHPI GGTGA 2 cut(s) 9, 769
AsuII TTCGAA 1 cut(s) 646
AvaII GGWCC 1 cut(s) 91
BamHI GGATCC 1 cut(s) 935
BanI GGYRCC 1 cut(s) 713
BarI GAAGNNNNNNTAC 2 cut(s) 17, 49
BbsI GAAGAC 1 cut(s) 66
BbvI GCAGC 3 cut(s) 244, 755, 767
BccI CCATC 3 cut(s) 119, 128, 551
BceAI ACGGC 1 cut(s) 878
BcgI CGANNNNNNTGC 2 cut(s) 47, 81
BciT130I CCWGG 1 cut(s) 698
BcoDI GTCTC 1 cut(s) 473
BfaI CTAG 1 cut(s) 929
BfmI CTRYAG 1 cut(s) 666
BfoI RGCGCY 1 cut(s) 802
BfrI CTTAAG 1 cut(s) 922
BfuAI ACCTGC 1 cut(s) 64
BglII AGATCT 1 cut(s) 918
BisI GCNGC 3 cut(s) 233, 744, 756
BlsI GCNGC 3 cut(s) 234, 745, 757
Bme1390I CCNGG 1 cut(s) 698
Bme18I GGWCC 1 cut(s) 91
BmgT120I GGNCC 2 cut(s) 91, 398
BmiI GGNNCC 3 cut(s) 310, 715, 937
BmrFI CCNGG 1 cut(s) 698
BmsI GCATC 2 cut(s) 281, 937
BpiI GAAGAC 1 cut(s) 66
BpmI CTGGAG 2 cut(s) 89, 729
Bpu10I CCTNAGC 1 cut(s) 795
Bpu14I TTCGAA 1 cut(s) 646
BsaJI CCNNGG 5 cut(s) 214, 357, 600, 759, 781
BsaXI ACNNNNNCTCC 2 cut(s) 830, 860
Bsc4I CCNNNNNNNGG 3 cut(s) 117, 557, 858
Bse1I ACTGG 3 cut(s) 310, 405, 487
Bse3DI GCAATG 1 cut(s) 939
BseBI CCWGG 1 cut(s) 698
BseDI CCNNGG 5 cut(s) 214, 357, 600, 759, 781
BseGI GGATG 2 cut(s) 272, 343
BseLI CCNNNNNNNGG 3 cut(s) 117, 557, 858
BseMI GCAATG 1 cut(s) 939
BseMII CTCAG 1 cut(s) 98
BseNI ACTGG 3 cut(s) 310, 405, 487
BseXI GCAGC 3 cut(s) 244, 755, 767
BsgI GTGCAG 1 cut(s) 774
BshFI GGCC 2 cut(s) 180, 399
BshNI GGYRCC 1 cut(s) 713
BslI CCNNNNNNNGG 3 cut(s) 117, 557, 858
BsmAI GTCTC 1 cut(s) 473
BsmI GAATGC 1 cut(s) 59
BsnI GGCC 2 cut(s) 180, 399
Bsp119I TTCGAA 1 cut(s) 646
Bsp143I GATC 5 cut(s) 457, 589, 861, 918, 935
Bsp19I CCATGG 3 cut(s) 357, 600, 781
BspACI CCGC 1 cut(s) 878
BspANI GGCC 2 cut(s) 180, 399
BspCNI CTCAG 1 cut(s) 97
BspLI GGNNCC 3 cut(s) 310, 715, 937
BspMAI CTGCAG 1 cut(s) 670
BspMI ACCTGC 1 cut(s) 64
BspPI GGATC 5 cut(s) 465, 597, 869, 930, 943
BspT104I TTCGAA 1 cut(s) 646
BspT107I GGYRCC 1 cut(s) 713
BspTI CTTAAG 1 cut(s) 922
BsrDI GCAATG 1 cut(s) 939
BsrI ACTGG 3 cut(s) 310, 405, 487
BssECI CCNNGG 5 cut(s) 214, 357, 600, 759, 781
BssMI GATC 5 cut(s) 457, 589, 861, 918, 935
BssT1I CCWWGG 5 cut(s) 214, 357, 600, 759, 781
Bst2UI CCWGG 1 cut(s) 698
Bst4CI ACNGT 1 cut(s) 886
BstAFI CTTAAG 1 cut(s) 922
BstBI TTCGAA 1 cut(s) 646
BstC8I GCNNGC 1 cut(s) 878
BstDEI CTNAG 2 cut(s) 84, 795
BstDSI CCRYGG 3 cut(s) 357, 600, 781
BstF5I GGATG 2 cut(s) 272, 343
BstH2I RGCGCY 1 cut(s) 802
BstHHI GCGC 2 cut(s) 50, 801
BstKTI GATC 5 cut(s) 460, 592, 864, 921, 938
BstMAI GTCTC 1 cut(s) 473
BstMBI GATC 5 cut(s) 457, 589, 861, 918, 935
BstMWI GCNNNNNNNGC 3 cut(s) 54, 197, 752
BstNI CCWGG 1 cut(s) 698
BstNSI RCATGY 2 cut(s) 188, 431
BstSCI CCNGG 1 cut(s) 696
BstSFI CTRYAG 1 cut(s) 666
BstV1I GCAGC 3 cut(s) 244, 755, 767
BstV2I GAAGAC 1 cut(s) 66
BstX2I RGATCY 2 cut(s) 918, 935
BstYI RGATCY 2 cut(s) 918, 935
BsuRI GGCC 2 cut(s) 180, 399
BtgI CCRYGG 3 cut(s) 357, 600, 781
BtsCI GGATG 2 cut(s) 272, 343
BveI ACCTGC 1 cut(s) 64
Cac8I GCNNGC 1 cut(s) 878
CfoI GCGC 2 cut(s) 50, 801
Cfr13I GGNCC 2 cut(s) 91, 398
CseI GACGC 1 cut(s) 189
CsiI ACCWGGT 1 cut(s) 696
CviAII CATG 9 cut(s) 185, 358, 428, 461, 601, 677, 749, 782, 804
DdeI CTNAG 2 cut(s) 84, 795
DpnI GATC 5 cut(s) 459, 591, 863, 920, 937
DpnII GATC 5 cut(s) 457, 589, 861, 918, 935
Eco130I CCWWGG 5 cut(s) 214, 357, 600, 759, 781
Eco47I GGWCC 1 cut(s) 91
Eco47III AGCGCT 1 cut(s) 800
Eco57I CTGAAG 1 cut(s) 190
EcoRII CCWGG 1 cut(s) 696
EcoT14I CCWWGG 5 cut(s) 214, 357, 600, 759, 781
ErhI CCWWGG 5 cut(s) 214, 357, 600, 759, 781
FaeI CATG 9 cut(s) 188, 361, 431, 464, 604, 680, 752, 785, 807
FatI CATG 9 cut(s) 184, 357, 427, 460, 600, 676, 748, 781, 803
FauI CCCGC 1 cut(s) 885
FblI GTMKAC 1 cut(s) 33
Fnu4HI GCNGC 3 cut(s) 233, 744, 756
FokI GGATG 2 cut(s) 259, 350
Fsp4HI GCNGC 3 cut(s) 233, 744, 756
FspBI CTAG 1 cut(s) 929
GlaI GCGC 2 cut(s) 49, 800
GluI GCNGC 3 cut(s) 233, 744, 756
GsuI CTGGAG 2 cut(s) 89, 729
HaeII RGCGCY 1 cut(s) 802
HaeIII GGCC 2 cut(s) 180, 399
HgaI GACGC 1 cut(s) 189
HhaI GCGC 2 cut(s) 50, 801
Hin1II CATG 9 cut(s) 188, 361, 431, 464, 604, 680, 752, 785, 807
Hin6I GCGC 2 cut(s) 48, 799
HinP1I GCGC 2 cut(s) 48, 799
HinfI GANTC 6 cut(s) 486, 524, 573, 648, 841, 869
HphI GGTGA 2 cut(s) 9, 769
Hpy166II GTNNAC 1 cut(s) 34
Hpy188I TCNGA 2 cut(s) 91, 529
Hpy188III TCNNGA 5 cut(s) 106, 521, 551, 623, 708
Hpy8I GTNNAC 1 cut(s) 34
HpyAV CCTTC 5 cut(s) 182, 214, 286, 326, 620
HpyCH4III ACNGT 1 cut(s) 886
HpyF10VI GCNNNNNNNGC 3 cut(s) 54, 197, 752
HpyF3I CTNAG 2 cut(s) 84, 795
Hsp92II CATG 9 cut(s) 188, 361, 431, 464, 604, 680, 752, 785, 807
HspAI GCGC 2 cut(s) 48, 799
Kzo9I GATC 5 cut(s) 457, 589, 861, 918, 935
LmnI GCTCC 3 cut(s) 215, 560, 808
Lsp1109I GCAGC 3 cut(s) 244, 755, 767
LweI GCATC 2 cut(s) 281, 937
MabI ACCWGGT 1 cut(s) 696
MaeI CTAG 1 cut(s) 929
MaeIII GTNAC 4 cut(s) 15, 611, 775, 886
MalI GATC 5 cut(s) 459, 591, 863, 920, 937
MboI GATC 5 cut(s) 457, 589, 861, 918, 935
MboII GAAGA 5 cut(s) 34, 71, 289, 338, 341
MflI RGATCY 2 cut(s) 918, 935
MluCI AATT 1 cut(s) 720
MlyI GAGTC 1 cut(s) 518
MmeI TCCRAC 3 cut(s) 69, 567, 816
MnlI CCTC 7 cut(s) 104, 114, 170, 518, 630, 649, 704
MroXI GAANNNNTTC 1 cut(s) 572
MseI TTAA 4 cut(s) 497, 719, 897, 923
MslI CAYNNNNRTG 2 cut(s) 605, 825
MspA1I CMGCKG 1 cut(s) 235
MspCI CTTAAG 1 cut(s) 922
MspR9I CCNGG 1 cut(s) 698
Mva1269I GAATGC 1 cut(s) 59
MvaI CCWGG 1 cut(s) 698
MwoI GCNNNNNNNGC 3 cut(s) 54, 197, 752
NcoI CCATGG 3 cut(s) 357, 600, 781
NdeII GATC 5 cut(s) 457, 589, 861, 918, 935
NlaIII CATG 9 cut(s) 188, 361, 431, 464, 604, 680, 752, 785, 807
NlaIV GGNNCC 3 cut(s) 310, 715, 937
NmeAIII GCCGAG 1 cut(s) 49
NmuCI GTSAC 3 cut(s) 15, 775, 886
NspI RCATGY 2 cut(s) 188, 431
NspV TTCGAA 1 cut(s) 646
PciI ACATGT 1 cut(s) 184
PctI GAATGC 1 cut(s) 59
PdmI GAANNNNTTC 1 cut(s) 572
PfeI GAWTC 5 cut(s) 486, 573, 648, 841, 869
PflMI CCANNNNNTGG 1 cut(s) 117
PkrI GCNGC 3 cut(s) 234, 745, 757
PleI GAGTC 1 cut(s) 518
PpsI GAGTC 1 cut(s) 518
PscI ACATGT 1 cut(s) 184
Psp6I CCWGG 1 cut(s) 696
PspGI CCWGG 1 cut(s) 696
PspN4I GGNNCC 3 cut(s) 310, 715, 937
PspPI GGNCC 2 cut(s) 91, 398
PstI CTGCAG 1 cut(s) 670
PsuI RGATCY 2 cut(s) 918, 935
PvuII CAGCTG 1 cut(s) 235
RseI CAYNNNNRTG 2 cut(s) 605, 825
SaqAI TTAA 4 cut(s) 497, 719, 897, 923
SatI GCNGC 3 cut(s) 233, 744, 756
Sau3AI GATC 5 cut(s) 457, 589, 861, 918, 935
Sau96I GGNCC 2 cut(s) 91, 398
SbfI CCTGCAGG 1 cut(s) 670
SchI GAGTC 1 cut(s) 518
ScrFI CCNGG 1 cut(s) 698
SdaI CCTGCAGG 1 cut(s) 670
SexAI ACCWGGT 1 cut(s) 696
SfaNI GCATC 2 cut(s) 281, 937
SfcI CTRYAG 1 cut(s) 666
SfuI TTCGAA 1 cut(s) 646
SinI GGWCC 1 cut(s) 91
SmiMI CAYNNNNRTG 2 cut(s) 605, 825
SmlI CTYRAG 1 cut(s) 922
SmoI CTYRAG 1 cut(s) 922
Sse8387I CCTGCAGG 1 cut(s) 670
Sse9I AATT 1 cut(s) 720
SsiI CCGC 1 cut(s) 878
SspMI CTAG 1 cut(s) 929
StyD4I CCNGG 1 cut(s) 696
StyI CCWWGG 5 cut(s) 214, 357, 600, 759, 781
TaaI ACNGT 1 cut(s) 886
TaqI TCGA 2 cut(s) 175, 646
TasI AATT 1 cut(s) 720
TfiI GAWTC 5 cut(s) 486, 573, 648, 841, 869
Tru1I TTAA 4 cut(s) 497, 719, 897, 923
Tru9I TTAA 4 cut(s) 497, 719, 897, 923
TseFI GTSAC 3 cut(s) 15, 775, 886
TseI GCWGC 3 cut(s) 232, 743, 755
Tsp45I GTSAC 3 cut(s) 15, 775, 886
TspDTI ATGAA 2 cut(s) 142, 665
TspGWI ACGGA 1 cut(s) 834
Van91I CCANNNNNTGG 1 cut(s) 117
Vha464I CTTAAG 1 cut(s) 922
VpaK11BI GGWCC 1 cut(s) 91
XceI RCATGY 2 cut(s) 188, 431
XmiI GTMKAC 1 cut(s) 33
XmnI GAANNNNTTC 1 cut(s) 572
XspI CTAG 1 cut(s) 929
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.