Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0009478

Physical Location & Seq

Genomic Coordinates Reverse (-)

19088752 .. 19092414

Gene Structure 3663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G173100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGAAAACTCACAGAAGAAGCAAGTGTTCCTATTCTACTGCGCTGAATGCGAAGATCTTGCTCGACAGGTCGCTTCTCAGTCTGACCACATAACCCTCCAGACCATCAAATGGAGGACTTTTGATGATGGATTTCCAAACATTTTCATAAACAACGCACAAGACCTTCGAGGCCAACATGTTGCCTTTCTTGCATCATTTAGCTCTCAAGGAGTTATCTTTGAACAGCTTTCTGTAATATATGCACTCCCCCGGCTGTTTGTTGCATCGTTCACATTAGTTTTGCCTTTCTTTCCAACTGGTTCTTTTGAACGAATGGAAGAAGAAGGGGATGTAGCAACTGCATTTACCATGGCAAGAATGTTGTCCAATATTCCCATATCAAAAGGTGGCCCAAACAGTGTACTCATCTATGACATACATGCTTTACAGGAAAGATTTTATTTTGGGGACCATGTTTTGCCTTTGTTTGAGACTGGAATTCCACTCTTGAAGCAGCGTCTCCACCAGCTTCCCGACTCTGATAAGATAGTTGTTGCATTTCCCGATGATGGAGCATGGAAGCGATTCCACAAGCAGTTGGATCACTTTCCCATGGTGGTGTGTAATAAGGTTCGTGAAGGTGACAAGAGGATAGTTCGGATCAAGGAGGGAAATCCTGCTGGTTATCATGTAGTCATTGTTGATGACTTGGTGCAATCTGGCGGCACCTTGATCGAGTGCCAGAAAGTTTTGGCTGCTCATGGTGCAGCCAAGGTTAGTGCTTATGTCACGCATGGTGTATTTCCTAAACGCTCATGGGAGCGGTTCACTCACAAGGATGAAGGCTCGGAGAAGGCATTCGCCTACTTTTGGATCACGGATTCCTGCCCGCTTACTGTCAAAGCCGTGGCAAATAAAGCTCCCTTTGAGGTGTTAAGTCTTGCAGGTTCCATTGCTGATGCTCTACAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pribosyltran Pribosyltran_N

Protein Analysis

319

Amino Acids

35.69

Weight (kDa)

6.26

Isoelectric Point (pI)

49.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42910
fragaria_vesca	FvH4_6g38260 FvH4_6g38260 FvH4_6g38260 FvH4_6g38260 FvH4_6g38260
malus_domestica	MD09G1151500.v1.1 MD17G1139200.v1.1
prunus_persica	Prupe.3G173100_v2.0.a1 Prupe.3G173100_v2.0.a1 Prupe.3G173100_v2.0.a1
pyrus_communis	pycom17g13230
rosa_chinensis	RchiOBHm_Chr2g0151521
rosa_laevigata	RLG00000020557
rosa_multiflora	Rmu_sc0000940.1_g000022
rosa_roxburghii	Rroxscaffold_2G00096380
rosa_rugosa	Rorug02G0426900
rosa_samantha	Rh2AG487600 Rh2BG500000 Rh2CG474100 Rh2DG511200
rosa_wichuraiana	Rw2G039970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	917
AccB1I	GGYRCC	1 cut(s)	707
AccB7I	CCANNNNNTGG	1 cut(s)	111
AccBSI	CCGCTC	1 cut(s)	805
AciI	CCGC	3 cut(s)	705, 805, 872
AclWI	GGATC	3 cut(s)	591, 650, 863
AcsI	RAATTY	1 cut(s)	480
AfaI	GTAC	1 cut(s)	405
AfiI	CCNNNNNNNGG	3 cut(s)	111, 551, 852
AflIII	ACRYGT	1 cut(s)	178
AgsI	TTSAA	3 cut(s)	224, 311, 493
AluBI	AGCT	4 cut(s)	204, 229, 511, 902
AluI	AGCT	4 cut(s)	204, 229, 511, 902
Alw26I	GTCTC	2 cut(s)	467, 506
AlwI	GGATC	3 cut(s)	591, 650, 863
AoxI	GGCC	2 cut(s)	172, 391
ApeKI	GCWGC	3 cut(s)	496, 737, 749
ApoI	RAATTY	1 cut(s)	480
Asp700I	GAANNNNTTC	2 cut(s)	566, 839
AspLEI	GCGC	1 cut(s)	44
AspS9I	GGNCC	2 cut(s)	392, 451
AsuC2I	CCSGG	1 cut(s)	253
AsuHPI	GGTGA	1 cut(s)	635
AvaII	GGWCC	1 cut(s)	451
BanI	GGYRCC	1 cut(s)	707
BbvI	GCAGC	3 cut(s)	508, 724, 761
BccI	CCATC	3 cut(s)	113, 122, 545
BceAI	ACGGC	1 cut(s)	872
BcgI	CGANNNNNNTGC	4 cut(s)	41, 75, 697, 731
BcnI	CCSGG	1 cut(s)	253
BcoDI	GTCTC	2 cut(s)	467, 506
BfmI	CTRYAG	1 cut(s)	947
BfuAI	ACCTGC	1 cut(s)	917
BglII	AGATCT	1 cut(s)	55
BisI	GCNGC	4 cut(s)	497, 706, 738, 750
BlsI	GCNGC	4 cut(s)	498, 707, 739, 751
Bme1390I	CCNGG	1 cut(s)	253
Bme18I	GGWCC	1 cut(s)	451
BmgT120I	GGNCC	2 cut(s)	392, 451
BmiI	GGNNCC	3 cut(s)	452, 709, 931
BmrFI	CCNGG	1 cut(s)	253
BmsI	GCATC	3 cut(s)	203, 275, 931
BpmI	CTGGAG	1 cut(s)	83
BpuEI	CTTGAG	1 cut(s)	192
BpuMI	CCSGG	1 cut(s)	253
BsaJI	CCNNGG	5 cut(s)	251, 351, 594, 753, 888
Bsc4I	CCNNNNNNNGG	3 cut(s)	111, 551, 852
Bse1I	ACTGG	2 cut(s)	304, 481
Bse3DI	GCAATG	1 cut(s)	933
BseDI	CCNNGG	5 cut(s)	251, 351, 594, 753, 888
BseGI	GGATG	2 cut(s)	337, 826
BseLI	CCNNNNNNNGG	3 cut(s)	111, 551, 852
BseMI	GCAATG	1 cut(s)	933
BseMII	CTCAG	1 cut(s)	92
BseNI	ACTGG	2 cut(s)	304, 481
BseXI	GCAGC	3 cut(s)	508, 724, 761
BsgI	GTGCAG	1 cut(s)	768
BshFI	GGCC	2 cut(s)	174, 393
BshNI	GGYRCC	1 cut(s)	707
BsiSI	CCGG	1 cut(s)	253
BslFI	GGGAC	1 cut(s)	464
BslI	CCNNNNNNNGG	3 cut(s)	111, 551, 852
BsmAI	GTCTC	2 cut(s)	467, 506
BsmBI	CGTCTC	1 cut(s)	506
BsmFI	GGGAC	1 cut(s)	464
BsmI	GAATGC	2 cut(s)	53, 839
BsnI	GGCC	2 cut(s)	174, 393
Bsp143I	GATC	5 cut(s)	55, 583, 642, 714, 855
Bsp19I	CCATGG	2 cut(s)	351, 594
BspACI	CCGC	3 cut(s)	705, 805, 872
BspANI	GGCC	2 cut(s)	174, 393
BspCNI	CTCAG	1 cut(s)	91
BspLI	GGNNCC	3 cut(s)	452, 709, 931
BspMI	ACCTGC	1 cut(s)	917
BspPI	GGATC	3 cut(s)	591, 650, 863
BspT107I	GGYRCC	1 cut(s)	707
BsrBI	CCGCTC	1 cut(s)	805
BsrDI	GCAATG	1 cut(s)	933
BsrI	ACTGG	2 cut(s)	304, 481
BssECI	CCNNGG	5 cut(s)	251, 351, 594, 753, 888
BssMI	GATC	5 cut(s)	55, 583, 642, 714, 855
BssT1I	CCWWGG	3 cut(s)	351, 594, 753
Bst4CI	ACNGT	2 cut(s)	401, 880
BstC8I	GCNNGC	1 cut(s)	872
BstDEI	CTNAG	1 cut(s)	78
BstDSI	CCRYGG	3 cut(s)	351, 594, 888
BstF5I	GGATG	2 cut(s)	337, 826
BstHHI	GCGC	1 cut(s)	44
BstKTI	GATC	5 cut(s)	58, 586, 645, 717, 858
BstMAI	GTCTC	2 cut(s)	467, 506
BstMBI	GATC	5 cut(s)	55, 583, 642, 714, 855
BstMWI	GCNNNNNNNGC	4 cut(s)	48, 191, 746, 899
BstNSI	RCATGY	2 cut(s)	182, 425
BstSCI	CCNGG	1 cut(s)	251
BstSFI	CTRYAG	1 cut(s)	947
BstV1I	GCAGC	3 cut(s)	508, 724, 761
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
BsuRI	GGCC	2 cut(s)	174, 393
BtgI	CCRYGG	3 cut(s)	351, 594, 888
BtsCI	GGATG	2 cut(s)	337, 826
BtsIMutI	CAGTG	1 cut(s)	406
BveI	ACCTGC	1 cut(s)	917
Cac8I	GCNNGC	1 cut(s)	872
CfoI	GCGC	1 cut(s)	44
Cfr13I	GGNCC	2 cut(s)	392, 451
CseI	GACGC	1 cut(s)	488
Csp6I	GTAC	1 cut(s)	404
CviQI	GTAC	1 cut(s)	404
DdeI	CTNAG	1 cut(s)	78
DpnI	GATC	5 cut(s)	57, 585, 644, 716, 857
DpnII	GATC	5 cut(s)	55, 583, 642, 714, 855
Eco130I	CCWWGG	3 cut(s)	351, 594, 753
Eco47I	GGWCC	1 cut(s)	451
EcoRI	GAATTC	1 cut(s)	480
EcoT14I	CCWWGG	3 cut(s)	351, 594, 753
ErhI	CCWWGG	3 cut(s)	351, 594, 753
Esp3I	CGTCTC	1 cut(s)	506
FaqI	GGGAC	1 cut(s)	464
FauI	CCCGC	1 cut(s)	879
Fnu4HI	GCNGC	4 cut(s)	497, 706, 738, 750
FokI	GGATG	2 cut(s)	344, 833
Fsp4HI	GCNGC	4 cut(s)	497, 706, 738, 750
GlaI	GCGC	1 cut(s)	43
GluI	GCNGC	4 cut(s)	497, 706, 738, 750
GsuI	CTGGAG	1 cut(s)	83
HaeIII	GGCC	2 cut(s)	174, 393
HapII	CCGG	1 cut(s)	253
HgaI	GACGC	1 cut(s)	488
HhaI	GCGC	1 cut(s)	44
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HinfI	GANTC	3 cut(s)	518, 567, 863
HpaII	CCGG	1 cut(s)	253
HphI	GGTGA	1 cut(s)	635
Hpy166II	GTNNAC	3 cut(s)	273, 404, 810
Hpy188I	TCNGA	4 cut(s)	85, 523, 642, 832
Hpy188III	TCNNGA	5 cut(s)	100, 490, 515, 545, 617
Hpy8I	GTNNAC	3 cut(s)	273, 404, 810
HpyAV	CCTTC	5 cut(s)	176, 320, 614, 818, 829
HpyCH4III	ACNGT	2 cut(s)	401, 880
HpyCH4V	TGCA	8 cut(s)	194, 245, 266, 344, 539, 697, 749, 926
HpyF10VI	GCNNNNNNNGC	4 cut(s)	48, 191, 746, 899
HpyF3I	CTNAG	1 cut(s)	78
HspAI	GCGC	1 cut(s)	42
Kzo9I	GATC	5 cut(s)	55, 583, 642, 714, 855
LmnI	GCTCC	3 cut(s)	554, 802, 907
Lsp1109I	GCAGC	3 cut(s)	508, 724, 761
LweI	GCATC	3 cut(s)	203, 275, 931
MaeIII	GTNAC	2 cut(s)	623, 769
MalI	GATC	5 cut(s)	57, 585, 644, 716, 857
MbiI	CCGCTC	1 cut(s)	805
MboI	GATC	5 cut(s)	55, 583, 642, 714, 855
MboII	GAAGA	4 cut(s)	28, 65, 332, 335
MflI	RGATCY	1 cut(s)	55
MluCI	AATT	1 cut(s)	480
MlyI	GAGTC	1 cut(s)	512
MmeI	TCCRAC	2 cut(s)	320, 561
MnlI	CCTC	6 cut(s)	107, 108, 164, 624, 643, 904
MroXI	GAANNNNTTC	2 cut(s)	566, 839
MseI	TTAA	1 cut(s)	917
MslI	CAYNNNNRTG	2 cut(s)	599, 819
MspI	CCGG	1 cut(s)	253
MspR9I	CCNGG	1 cut(s)	253
Mva1269I	GAATGC	2 cut(s)	53, 839
MwoI	GCNNNNNNNGC	4 cut(s)	48, 191, 746, 899
NciI	CCSGG	1 cut(s)	253
NcoI	CCATGG	2 cut(s)	351, 594
NdeII	GATC	5 cut(s)	55, 583, 642, 714, 855
NlaIV	GGNNCC	3 cut(s)	452, 709, 931
NmuCI	GTSAC	2 cut(s)	623, 769
NspI	RCATGY	2 cut(s)	182, 425
PciI	ACATGT	1 cut(s)	178
PctI	GAATGC	2 cut(s)	53, 839
PdmI	GAANNNNTTC	2 cut(s)	566, 839
PfeI	GAWTC	2 cut(s)	567, 863
PflMI	CCANNNNNTGG	1 cut(s)	111
PkrI	GCNGC	4 cut(s)	498, 707, 739, 751
PleI	GAGTC	1 cut(s)	512
PpsI	GAGTC	1 cut(s)	512
PscI	ACATGT	1 cut(s)	178
PspN4I	GGNNCC	3 cut(s)	452, 709, 931
PspPI	GGNCC	2 cut(s)	392, 451
PsuI	RGATCY	1 cut(s)	55
RsaI	GTAC	1 cut(s)	405
RsaNI	GTAC	1 cut(s)	404
RseI	CAYNNNNRTG	2 cut(s)	599, 819
SaqAI	TTAA	1 cut(s)	917
SatI	GCNGC	4 cut(s)	497, 706, 738, 750
Sau3AI	GATC	5 cut(s)	55, 583, 642, 714, 855
Sau96I	GGNCC	2 cut(s)	392, 451
SchI	GAGTC	1 cut(s)	512
ScrFI	CCNGG	1 cut(s)	253
SfaNI	GCATC	3 cut(s)	203, 275, 931
SfcI	CTRYAG	1 cut(s)	947
SinI	GGWCC	1 cut(s)	451
SmiMI	CAYNNNNRTG	2 cut(s)	599, 819
SmlI	CTYRAG	1 cut(s)	207
SmoI	CTYRAG	1 cut(s)	207
Sse9I	AATT	1 cut(s)	480
SsiI	CCGC	3 cut(s)	705, 805, 872
SspI	AATATT	1 cut(s)	373
StyD4I	CCNGG	1 cut(s)	251
StyI	CCWWGG	3 cut(s)	351, 594, 753
TaaI	ACNGT	2 cut(s)	401, 880
TaqI	TCGA	3 cut(s)	64, 169, 717
TasI	AATT	1 cut(s)	480
TatI	WGTACW	1 cut(s)	403
TauI	GCSGC	1 cut(s)	708
TfiI	GAWTC	2 cut(s)	567, 863
Tru1I	TTAA	1 cut(s)	917
Tru9I	TTAA	1 cut(s)	917
TscAI	CASTG	1 cut(s)	406
TseFI	GTSAC	2 cut(s)	623, 769
TseI	GCWGC	3 cut(s)	496, 737, 749
Tsp45I	GTSAC	2 cut(s)	623, 769
TspDTI	ATGAA	2 cut(s)	136, 837
TspGWI	ACGGA	1 cut(s)	875
TspRI	CASTG	1 cut(s)	406
Van91I	CCANNNNNTGG	1 cut(s)	111
VpaK11BI	GGWCC	1 cut(s)	451
XapI	RAATTY	1 cut(s)	480
XceI	RCATGY	2 cut(s)	182, 425
XmnI	GAANNNNTTC	2 cut(s)	566, 839

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.