Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0009478

Physical Location & Seq

Genomic Coordinates Forward (+)

10896317 .. 10898716

Gene Structure 2400 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g13230.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGACAAGTCACAGCAGAAGCAACTCTACCTCTTCTACTGCGCCGAGTGCGAAGACCTTGCTCGCCAGGTCGCTTCTGAGTCCGACCACATCATCCTCCAGACCATCAAATGGAGGAATTTTGATGACGGGTTTCCAAACATATTTATAAACAATGCACAAGATCTTCGAGGCCAACATGTTGCCTTTCTAGGATCCTTCAGCTCCCAAGGAGTTATCTTTGAGCAGCTTTCTGTAATATATGCACTGCCTCGACTATTTGTTGCGTCCTTCACATTAGTATTGCCTTTCTTTCCAACTGGTTCCTTCGAAAGAATGGAAGAAGAAGGGGATGTAGCAACTGCGTTTACCATGGCGAGAATGCTGTCAAATATTCCCATATCCAGAGGTGGCCCAACCAGTTTAGTCATCTATGACATCCATGCTTTACAGGAAAGGTTTTATTTTGGGGACCATGTTTTGCCTTTGTTTGAGACTGGAATTCCACTCTTAAAGCAGCGTCTCCACCAGCTTTCTGACTCCGATAAGATAGTTGTTGCATTTCCTGATGATGGAGCATGGAAGCGATTCCACAAGCAGTTGGATCATTTTCCCATGGTGGTGTGCAATAAGGTTCGTGAAGGTGATAAGAGGATAGTTCGGATAAAGGAGGGAAATCCTGCTGGTTGTCATGTAGTCGTCGTTGATGACTTAGTGCAATCTGGCGGCACCCTAATTGAGTGCCAGAAAGTTTTGGCAGCTCATGGTGCAGCCAAGGTTAGCGCTTATGTAACCCACGGTGTATTTCCTAAACGCTCATGGGAGCGGTTCACTCACAAGGATGATGGCTTGGAGAAGGCATTTGCCTACTTTTGGATCACGGATTCCTGCCCTCTCACCGTCAAAGCGGTGGCTAATAAAGCTCCCTTCGAGGTGTTAAGTCTTGCAGGTTCCATTGCTGATGCTCTACAGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pribosyltran Pribosyltran_N

Protein Analysis

319

Amino Acids

35.66

Weight (kDa)

6.12

Isoelectric Point (pI)

50.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42910
fragaria_vesca	FvH4_6g38260 FvH4_6g38260 FvH4_6g38260 FvH4_6g38260 FvH4_6g38260
malus_domestica	MD09G1151500.v1.1 MD17G1139200.v1.1
prunus_persica	Prupe.3G173100_v2.0.a1 Prupe.3G173100_v2.0.a1 Prupe.3G173100_v2.0.a1
pyrus_communis	pycom17g13230
rosa_chinensis	RchiOBHm_Chr2g0151521
rosa_laevigata	RLG00000020557
rosa_multiflora	Rmu_sc0000940.1_g000022
rosa_roxburghii	Rroxscaffold_2G00096380
rosa_rugosa	Rorug02G0426900
rosa_samantha	Rh2AG487600 Rh2BG500000 Rh2CG474100 Rh2DG511200
rosa_wichuraiana	Rw2G039970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	149
Acc36I	ACCTGC	1 cut(s)	917
AccB1I	GGYRCC	1 cut(s)	707
AccB7I	CCANNNNNTGG	1 cut(s)	111
AccBSI	CCGCTC	1 cut(s)	805
AciI	CCGC	3 cut(s)	705, 805, 887
AclWI	GGATC	4 cut(s)	189, 202, 591, 863
AcsI	RAATTY	2 cut(s)	118, 480
AcuI	CTGAAG	1 cut(s)	184
AfeI	AGCGCT	1 cut(s)	763
AfiI	CCNNNNNNNGG	3 cut(s)	111, 551, 852
AflIII	ACRYGT	1 cut(s)	178
AjnI	CCWGG	1 cut(s)	66
AluBI	AGCT	5 cut(s)	204, 229, 511, 740, 902
AluI	AGCT	5 cut(s)	204, 229, 511, 740, 902
Alw26I	GTCTC	2 cut(s)	467, 506
AlwI	GGATC	4 cut(s)	189, 202, 591, 863
Aor51HI	AGCGCT	1 cut(s)	763
AoxI	GGCC	2 cut(s)	172, 391
ApeKI	GCWGC	4 cut(s)	226, 496, 737, 749
ApoI	RAATTY	2 cut(s)	118, 480
Asp700I	GAANNNNTTC	1 cut(s)	566
AspLEI	GCGC	2 cut(s)	44, 764
AspS9I	GGNCC	2 cut(s)	392, 451
AsuHPI	GGTGA	2 cut(s)	635, 868
AsuII	TTCGAA	1 cut(s)	309
AvaII	GGWCC	1 cut(s)	451
BamHI	GGATCC	1 cut(s)	194
BanI	GGYRCC	1 cut(s)	707
BarI	GAAGNNNNNNTAC	2 cut(s)	11, 43
BbsI	GAAGAC	1 cut(s)	60
BbvI	GCAGC	4 cut(s)	238, 508, 749, 761
BccI	CCATC	3 cut(s)	113, 545, 818
BcgI	CGANNNNNNTGC	2 cut(s)	41, 75
BciT130I	CCWGG	1 cut(s)	68
BcoDI	GTCTC	2 cut(s)	467, 506
BfaI	CTAG	1 cut(s)	191
BfmI	CTRYAG	1 cut(s)	947
BfoI	RGCGCY	1 cut(s)	765
BfuAI	ACCTGC	1 cut(s)	917
BglII	AGATCT	1 cut(s)	163
BisI	GCNGC	5 cut(s)	227, 497, 706, 738, 750
BlsI	GCNGC	5 cut(s)	228, 498, 707, 739, 751
Bme1390I	CCNGG	1 cut(s)	68
Bme18I	GGWCC	1 cut(s)	451
BmgT120I	GGNCC	2 cut(s)	392, 451
BmiI	GGNNCC	5 cut(s)	196, 304, 452, 709, 931
BmrFI	CCNGG	1 cut(s)	68
BmsI	GCATC	1 cut(s)	931
BpiI	GAAGAC	1 cut(s)	60
BpmI	CTGGAG	1 cut(s)	83
Bpu14I	TTCGAA	1 cut(s)	309
BsaJI	CCNNGG	5 cut(s)	208, 351, 594, 753, 775
Bsc4I	CCNNNNNNNGG	3 cut(s)	111, 551, 852
Bse1I	ACTGG	3 cut(s)	304, 399, 481
Bse3DI	GCAATG	1 cut(s)	933
BseBI	CCWGG	1 cut(s)	68
BseDI	CCNNGG	5 cut(s)	208, 351, 594, 753, 775
BseGI	GGATG	4 cut(s)	93, 337, 417, 826
BseLI	CCNNNNNNNGG	3 cut(s)	111, 551, 852
BseMI	GCAATG	1 cut(s)	933
BseMII	CTCAG	1 cut(s)	69
BseNI	ACTGG	3 cut(s)	304, 399, 481
BseXI	GCAGC	4 cut(s)	238, 508, 749, 761
BsgI	GTGCAG	1 cut(s)	768
BshFI	GGCC	2 cut(s)	174, 393
BshNI	GGYRCC	1 cut(s)	707
BslFI	GGGAC	1 cut(s)	464
BslI	CCNNNNNNNGG	3 cut(s)	111, 551, 852
BsmAI	GTCTC	2 cut(s)	467, 506
BsmBI	CGTCTC	1 cut(s)	506
BsmFI	GGGAC	1 cut(s)	464
BsmI	GAATGC	1 cut(s)	366
BsnI	GGCC	2 cut(s)	174, 393
Bsp119I	TTCGAA	1 cut(s)	309
Bsp143I	GATC	4 cut(s)	163, 194, 583, 855
Bsp19I	CCATGG	2 cut(s)	351, 594
BspACI	CCGC	3 cut(s)	705, 805, 887
BspANI	GGCC	2 cut(s)	174, 393
BspCNI	CTCAG	1 cut(s)	70
BspLI	GGNNCC	5 cut(s)	196, 304, 452, 709, 931
BspMI	ACCTGC	1 cut(s)	917
BspPI	GGATC	4 cut(s)	189, 202, 591, 863
BspT104I	TTCGAA	1 cut(s)	309
BspT107I	GGYRCC	1 cut(s)	707
BsrBI	CCGCTC	1 cut(s)	805
BsrDI	GCAATG	1 cut(s)	933
BsrI	ACTGG	3 cut(s)	304, 399, 481
BssECI	CCNNGG	5 cut(s)	208, 351, 594, 753, 775
BssMI	GATC	4 cut(s)	163, 194, 583, 855
BssT1I	CCWWGG	4 cut(s)	208, 351, 594, 753
Bst2UI	CCWGG	1 cut(s)	68
Bst4CI	ACNGT	2 cut(s)	779, 880
Bst6I	CTCTTC	1 cut(s)	38
BstBI	TTCGAA	1 cut(s)	309
BstC8I	GCNNGC	1 cut(s)	64
BstDEI	CTNAG	2 cut(s)	78, 691
BstDSI	CCRYGG	3 cut(s)	351, 594, 775
BstF5I	GGATG	4 cut(s)	93, 337, 417, 826
BstH2I	RGCGCY	1 cut(s)	765
BstHHI	GCGC	2 cut(s)	44, 764
BstKTI	GATC	4 cut(s)	166, 197, 586, 858
BstMAI	GTCTC	2 cut(s)	467, 506
BstMBI	GATC	4 cut(s)	163, 194, 583, 855
BstMWI	GCNNNNNNNGC	3 cut(s)	48, 746, 899
BstNI	CCWGG	1 cut(s)	68
BstNSI	RCATGY	1 cut(s)	182
BstSCI	CCNGG	1 cut(s)	66
BstSFI	CTRYAG	1 cut(s)	947
BstV1I	GCAGC	4 cut(s)	238, 508, 749, 761
BstV2I	GAAGAC	1 cut(s)	60
BstX2I	RGATCY	2 cut(s)	163, 194
BstYI	RGATCY	2 cut(s)	163, 194
BsuRI	GGCC	2 cut(s)	174, 393
BtgI	CCRYGG	3 cut(s)	351, 594, 775
BtsCI	GGATG	4 cut(s)	93, 337, 417, 826
BtsI	GCAGTG	1 cut(s)	245
BtsIMutI	CAGTG	1 cut(s)	245
BveI	ACCTGC	1 cut(s)	917
Cac8I	GCNNGC	1 cut(s)	64
CfoI	GCGC	2 cut(s)	44, 764
Cfr13I	GGNCC	2 cut(s)	392, 451
CseI	GACGC	2 cut(s)	255, 488
CviAII	CATG	9 cut(s)	179, 352, 422, 455, 558, 595, 671, 743, 798
DdeI	CTNAG	2 cut(s)	78, 691
DpnI	GATC	4 cut(s)	165, 196, 585, 857
DpnII	GATC	4 cut(s)	163, 194, 583, 855
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
Eco130I	CCWWGG	4 cut(s)	208, 351, 594, 753
Eco47I	GGWCC	1 cut(s)	451
Eco47III	AGCGCT	1 cut(s)	763
Eco57I	CTGAAG	1 cut(s)	184
EcoRI	GAATTC	1 cut(s)	480
EcoRII	CCWGG	1 cut(s)	66
EcoT14I	CCWWGG	4 cut(s)	208, 351, 594, 753
ErhI	CCWWGG	4 cut(s)	208, 351, 594, 753
Esp3I	CGTCTC	1 cut(s)	506
FaeI	CATG	9 cut(s)	182, 355, 425, 458, 561, 598, 674, 746, 801
FaqI	GGGAC	1 cut(s)	464
FatI	CATG	9 cut(s)	178, 351, 421, 454, 557, 594, 670, 742, 797
Fnu4HI	GCNGC	5 cut(s)	227, 497, 706, 738, 750
FokI	GGATG	4 cut(s)	80, 344, 404, 833
Fsp4HI	GCNGC	5 cut(s)	227, 497, 706, 738, 750
FspBI	CTAG	1 cut(s)	191
GlaI	GCGC	2 cut(s)	43, 763
GluI	GCNGC	5 cut(s)	227, 497, 706, 738, 750
GsuI	CTGGAG	1 cut(s)	83
HaeII	RGCGCY	1 cut(s)	765
HaeIII	GGCC	2 cut(s)	174, 393
HgaI	GACGC	2 cut(s)	255, 488
HhaI	GCGC	2 cut(s)	44, 764
Hin1II	CATG	9 cut(s)	182, 355, 425, 458, 561, 598, 674, 746, 801
Hin6I	GCGC	2 cut(s)	42, 762
HinP1I	GCGC	2 cut(s)	42, 762
HinfI	GANTC	4 cut(s)	80, 518, 567, 863
HphI	GGTGA	2 cut(s)	635, 868
Hpy166II	GTNNAC	2 cut(s)	348, 810
Hpy188I	TCNGA	5 cut(s)	79, 85, 517, 523, 642
Hpy188III	TCNNGA	4 cut(s)	100, 384, 545, 617
Hpy8I	GTNNAC	2 cut(s)	348, 810
Hpy99I	CGWCG	1 cut(s)	683
HpyAV	CCTTC	7 cut(s)	208, 280, 316, 320, 614, 829, 916
HpyCH4III	ACNGT	2 cut(s)	779, 880
HpyCH4V	TGCA	7 cut(s)	158, 245, 539, 606, 697, 749, 926
HpyF10VI	GCNNNNNNNGC	3 cut(s)	48, 746, 899
HpyF3I	CTNAG	2 cut(s)	78, 691
Hsp92II	CATG	9 cut(s)	182, 355, 425, 458, 561, 598, 674, 746, 801
HspAI	GCGC	2 cut(s)	42, 762
Kzo9I	GATC	4 cut(s)	163, 194, 583, 855
LmnI	GCTCC	4 cut(s)	209, 554, 802, 907
Lsp1109I	GCAGC	4 cut(s)	238, 508, 749, 761
LweI	GCATC	1 cut(s)	931
MaeI	CTAG	1 cut(s)	191
MaeIII	GTNAC	2 cut(s)	9, 769
MalI	GATC	4 cut(s)	165, 196, 585, 857
MbiI	CCGCTC	1 cut(s)	805
MboI	GATC	4 cut(s)	163, 194, 583, 855
MboII	GAAGA	5 cut(s)	25, 65, 158, 332, 335
MflI	RGATCY	2 cut(s)	163, 194
MluCI	AATT	3 cut(s)	118, 480, 714
MlyI	GAGTC	2 cut(s)	89, 512
MmeI	TCCRAC	3 cut(s)	108, 320, 561
MroXI	GAANNNNTTC	1 cut(s)	566
MseI	TTAA	2 cut(s)	491, 917
MslI	CAYNNNNRTG	2 cut(s)	599, 819
MspR9I	CCNGG	1 cut(s)	68
Mva1269I	GAATGC	1 cut(s)	366
MvaI	CCWGG	1 cut(s)	68
MwoI	GCNNNNNNNGC	3 cut(s)	48, 746, 899
NcoI	CCATGG	2 cut(s)	351, 594
NdeII	GATC	4 cut(s)	163, 194, 583, 855
NlaIII	CATG	9 cut(s)	182, 355, 425, 458, 561, 598, 674, 746, 801
NlaIV	GGNNCC	5 cut(s)	196, 304, 452, 709, 931
NmeAIII	GCCGAG	1 cut(s)	70
NmuCI	GTSAC	1 cut(s)	9
NspI	RCATGY	1 cut(s)	182
NspV	TTCGAA	1 cut(s)	309
PciI	ACATGT	1 cut(s)	178
PctI	GAATGC	1 cut(s)	366
PdmI	GAANNNNTTC	1 cut(s)	566
PfeI	GAWTC	2 cut(s)	567, 863
PflMI	CCANNNNNTGG	1 cut(s)	111
PkrI	GCNGC	5 cut(s)	228, 498, 707, 739, 751
PleI	GAGTC	2 cut(s)	88, 512
PpsI	GAGTC	2 cut(s)	88, 512
PscI	ACATGT	1 cut(s)	178
PsiI	TTATAA	1 cut(s)	149
Psp6I	CCWGG	1 cut(s)	66
PspGI	CCWGG	1 cut(s)	66
PspN4I	GGNNCC	5 cut(s)	196, 304, 452, 709, 931
PspPI	GGNCC	2 cut(s)	392, 451
PsuI	RGATCY	2 cut(s)	163, 194
RseI	CAYNNNNRTG	2 cut(s)	599, 819
SaqAI	TTAA	2 cut(s)	491, 917
SatI	GCNGC	5 cut(s)	227, 497, 706, 738, 750
Sau3AI	GATC	4 cut(s)	163, 194, 583, 855
Sau96I	GGNCC	2 cut(s)	392, 451
SchI	GAGTC	2 cut(s)	89, 512
ScrFI	CCNGG	1 cut(s)	68
SfaNI	GCATC	1 cut(s)	931
SfcI	CTRYAG	1 cut(s)	947
SfuI	TTCGAA	1 cut(s)	309
SinI	GGWCC	1 cut(s)	451
SmiMI	CAYNNNNRTG	2 cut(s)	599, 819
Sse9I	AATT	3 cut(s)	118, 480, 714
SsiI	CCGC	3 cut(s)	705, 805, 887
SspI	AATATT	1 cut(s)	373
SspMI	CTAG	1 cut(s)	191
StyD4I	CCNGG	1 cut(s)	66
StyI	CCWWGG	4 cut(s)	208, 351, 594, 753
TaaI	ACNGT	2 cut(s)	779, 880
TaqI	TCGA	4 cut(s)	169, 253, 309, 909
TasI	AATT	3 cut(s)	118, 480, 714
TauI	GCSGC	1 cut(s)	708
TfiI	GAWTC	2 cut(s)	567, 863
Tru1I	TTAA	2 cut(s)	491, 917
Tru9I	TTAA	2 cut(s)	491, 917
TscAI	CASTG	1 cut(s)	252
TseFI	GTSAC	1 cut(s)	9
TseI	GCWGC	4 cut(s)	226, 496, 737, 749
Tsp45I	GTSAC	1 cut(s)	9
TspGWI	ACGGA	1 cut(s)	875
TspRI	CASTG	1 cut(s)	252
Van91I	CCANNNNNTGG	1 cut(s)	111
VpaK11BI	GGWCC	1 cut(s)	451
XapI	RAATTY	2 cut(s)	118, 480
XceI	RCATGY	1 cut(s)	182
XmnI	GAANNNNTTC	1 cut(s)	566
XspI	CTAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.