Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0009478

Physical Location & Seq

Genomic Coordinates Forward (+)

54778235 .. 54780608

Gene Structure 2374 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0426900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGCTATGGCGATTCGTTCTGCACTCGCAAAGCTGGCGAGTAACTCTGTTCACAAGAACAGAAGTGGAATTCTGATGCTTAGGGCTTTTGCTATCGACAAAAACCTCGATCGCCAAAGCCGGGCCGTTTCGGGGTTTCCTGCCGGTCATTTCTTCCGTCACCGATTCGATTATGGAAGCTATAAAAGCAAAAAAAAGGAGCTTAAGGTATTTGATTATTATATGGATTTAGGAGGATTAGAGCCTGCCCGTTTCGCCACGGAAGAGTTCAACAAGCGAAAGAAAATGCAACTGCAGTTTGTGAGAGTTGTCAAGGCACATAGGCATCTGCTGTGCACAGGAATTAGCAGCCTATATGATATAACATTGGAGGCAGTTGATGCCGGTGTCGCTAAACTTTACCAAGCAAAAGTTTCAGTAAATTTCACTGATGGCATGTTTTTGGAATGGTTCTGTCTTGTTGTCGATGATGGGTGTCCTATAGCACTATTTGATCACCTAGAAAACTTTTTTGCTCAGAAGGACAATGAAGACAGAGCAGAGAGTCAAATTCCGATGTGTAAAAAGCAGGGACTTAATTGTTCTAATAACTTATGTATCAAACTATGTCGTATTGAACCTGCATATGACTTATCAAATAATGGCAAGATGCAAAGATTTGGACGTTGGGCCGTGAAAATGTACAACAAGGAAAAGAATGCTAAACTGCAGTTTAAGAGAGTGGTGAACGGAAGCAAGCTGCAGTGGGAGGATTTTGTTTATCTAACAATGGAGGCAGCAGATGCTGGTGTGATGAAAATTTACCAAGCAGAACTGTTTTTGCCAGATGACGAGAAGATTAAGCATCCCAATTCCAAGCTCATTTTGTTTGGCCATGTTGATGATAATGGGGGATTGTCGATACTAATTGATAAGAGGCATGAAGAATGCACAAAAGAGATTTTGGAATCTGAAGATATTATTACAGCATACCAGCAAGGTTACTGCCGTTACAAGGATTCTAATGTTTTCCTTCCAACCTTTTTGAGATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006793 GO:0006796 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009555 GO:0009628 GO:0009987 GO:0010143 GO:0016020 GO:0016311 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016791 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032504 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0050896 GO:0051704 GO:0055046 GO:0071704 GO:0080167 GO:0090447 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110

Pfam Domains

Protein Families

Acyltransferase HAD

Protein Analysis

344

Amino Acids

39.62

Weight (kDa)

8.87

Isoelectric Point (pI)

44.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQAPI	PF16845	83 - 139	8e-06	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42910
fragaria_vesca	FvH4_6g38260 FvH4_6g38260 FvH4_6g38260 FvH4_6g38260 FvH4_6g38260
malus_domestica	MD09G1151500.v1.1 MD17G1139200.v1.1
prunus_persica	Prupe.3G173100_v2.0.a1 Prupe.3G173100_v2.0.a1 Prupe.3G173100_v2.0.a1
pyrus_communis	pycom17g13230
rosa_chinensis	RchiOBHm_Chr2g0151521
rosa_laevigata	RLG00000020557
rosa_multiflora	Rmu_sc0000940.1_g000022
rosa_roxburghii	Rroxscaffold_2G00096380
rosa_rugosa	Rorug02G0426900
rosa_samantha	Rh2AG487600 Rh2BG500000 Rh2CG474100 Rh2DG511200
rosa_wichuraiana	Rw2G039970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	628
AcoI	YGGCCR	1 cut(s)	871
AcsI	RAATTY	4 cut(s)	69, 421, 549, 798
AcuI	CTGAAG	1 cut(s)	972
AfaI	GTAC	1 cut(s)	683
AfiI	CCNNNNNNNGG	3 cut(s)	121, 132, 994
AflII	CTTAAG	1 cut(s)	203
AgsI	TTSAA	2 cut(s)	271, 617
AluBI	AGCT	5 cut(s)	34, 180, 202, 739, 859
AluI	AGCT	5 cut(s)	34, 180, 202, 739, 859
Alw21I	GWGCWC	1 cut(s)	338
Alw44I	GTGCAC	1 cut(s)	334
AlwNI	CAGNNNCTG	1 cut(s)	785
AoxI	GGCC	3 cut(s)	123, 669, 871
ApaLI	GTGCAC	1 cut(s)	334
ApeKI	GCWGC	3 cut(s)	348, 739, 776
ApoI	RAATTY	4 cut(s)	69, 421, 549, 798
AspS9I	GGNCC	2 cut(s)	123, 669
AsuC2I	CCSGG	1 cut(s)	122
AsuHPI	GGTGA	3 cut(s)	152, 488, 736
BaeGI	GKGCMC	1 cut(s)	338
BaeI	ACNNNNGTAYC	2 cut(s)	580, 613
BalI	TGGCCA	1 cut(s)	873
BbsI	GAAGAC	1 cut(s)	537
Bbv12I	GWGCWC	1 cut(s)	338
BbvI	GCAGC	3 cut(s)	360, 726, 788
BccI	CCATC	2 cut(s)	425, 464
BceAI	ACGGC	3 cut(s)	110, 656, 972
BclI	TGATCA	1 cut(s)	493
BcnI	CCSGG	1 cut(s)	122
BfaI	CTAG	1 cut(s)	500
BfmI	CTRYAG	4 cut(s)	293, 480, 707, 740
BfrI	CTTAAG	1 cut(s)	203
BfuAI	ACCTGC	1 cut(s)	628
BisI	GCNGC	3 cut(s)	349, 740, 777
BlsI	GCNGC	3 cut(s)	350, 741, 778
Bme1390I	CCNGG	1 cut(s)	122
BmgT120I	GGNCC	2 cut(s)	123, 669
BmrFI	CCNGG	1 cut(s)	122
BmsI	GCATC	6 cut(s)	66, 334, 370, 639, 772, 853
BpiI	GAAGAC	1 cut(s)	537
Bpu10I	CCTNAGC	1 cut(s)	80
BpuMI	CCSGG	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	258
Bsc4I	CCNNNNNNNGG	3 cut(s)	121, 132, 994
Bse118I	RCCGGY	2 cut(s)	143, 383
BseDI	CCNNGG	1 cut(s)	258
BseGI	GGATG	1 cut(s)	844
BseLI	CCNNNNNNNGG	3 cut(s)	121, 132, 994
BseMII	CTCAG	1 cut(s)	530
BseSI	GKGCMC	1 cut(s)	338
BseXI	GCAGC	3 cut(s)	360, 726, 788
BsgI	GTGCAG	1 cut(s)	6
Bsh1285I	CGRYCG	1 cut(s)	112
BshFI	GGCC	3 cut(s)	125, 671, 873
BsiEI	CGRYCG	1 cut(s)	112
BsiHKAI	GWGCWC	1 cut(s)	338
BsiSI	CCGG	3 cut(s)	121, 144, 384
BslFI	GGGAC	1 cut(s)	585
BslI	CCNNNNNNNGG	3 cut(s)	121, 132, 994
BsmFI	GGGAC	1 cut(s)	585
BsmI	GAATGC	2 cut(s)	703, 932
BsnI	GGCC	3 cut(s)	125, 671, 873
Bsp1286I	GDGCHC	1 cut(s)	338
Bsp1407I	TGTACA	1 cut(s)	681
Bsp143I	GATC	2 cut(s)	109, 493
BspANI	GGCC	3 cut(s)	125, 671, 873
BspCNI	CTCAG	1 cut(s)	529
BspMAI	CTGCAG	3 cut(s)	297, 711, 744
BspMI	ACCTGC	1 cut(s)	628
BspTI	CTTAAG	1 cut(s)	203
BsrFI	RCCGGY	2 cut(s)	143, 383
BsrGI	TGTACA	1 cut(s)	681
BssAI	RCCGGY	2 cut(s)	143, 383
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	2 cut(s)	109, 493
Bst4CI	ACNGT	1 cut(s)	816
Bst6I	CTCTTC	1 cut(s)	258
BstAFI	CTTAAG	1 cut(s)	203
BstAPI	GCANNNNNTGC	2 cut(s)	380, 782
BstAUI	TGTACA	1 cut(s)	681
BstC8I	GCNNGC	3 cut(s)	36, 246, 737
BstDEI	CTNAG	2 cut(s)	80, 516
BstDSI	CCRYGG	1 cut(s)	258
BstF5I	GGATG	1 cut(s)	844
BstKTI	GATC	2 cut(s)	112, 496
BstMBI	GATC	2 cut(s)	109, 493
BstMCI	CGRYCG	1 cut(s)	112
BstMWI	GCNNNNNNNGC	6 cut(s)	35, 186, 254, 380, 389, 782
BstNSI	RCATGY	1 cut(s)	439
BstSCI	CCNGG	1 cut(s)	120
BstSFI	CTRYAG	4 cut(s)	293, 480, 707, 740
BstSLI	GKGCMC	1 cut(s)	338
BstV1I	GCAGC	3 cut(s)	360, 726, 788
BstV2I	GAAGAC	1 cut(s)	537
BsuRI	GGCC	3 cut(s)	125, 671, 873
BtgI	CCRYGG	1 cut(s)	258
BtsCI	GGATG	1 cut(s)	844
BtsI	GCAGTG	1 cut(s)	749
BtsIMutI	CAGTG	2 cut(s)	426, 749
BveI	ACCTGC	1 cut(s)	628
Cac8I	GCNNGC	3 cut(s)	36, 246, 737
CaiI	CAGNNNCTG	1 cut(s)	785
Cfr10I	RCCGGY	2 cut(s)	143, 383
Cfr13I	GGNCC	2 cut(s)	123, 669
Csp6I	GTAC	1 cut(s)	682
CviAII	CATG	3 cut(s)	436, 875, 920
CviQI	GTAC	1 cut(s)	682
DdeI	CTNAG	2 cut(s)	80, 516
DpnI	GATC	2 cut(s)	111, 495
DpnII	GATC	2 cut(s)	109, 493
EaeI	YGGCCR	1 cut(s)	871
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
Eco57I	CTGAAG	1 cut(s)	972
EcoRI	GAATTC	1 cut(s)	69
FaeI	CATG	3 cut(s)	439, 878, 923
FaqI	GGGAC	1 cut(s)	585
FatI	CATG	3 cut(s)	435, 874, 919
FauNDI	CATATG	1 cut(s)	625
FbaI	TGATCA	1 cut(s)	493
Fnu4HI	GCNGC	3 cut(s)	349, 740, 777
FokI	GGATG	1 cut(s)	831
Fsp4HI	GCNGC	3 cut(s)	349, 740, 777
FspBI	CTAG	1 cut(s)	500
GluI	GCNGC	3 cut(s)	349, 740, 777
HaeIII	GGCC	3 cut(s)	125, 671, 873
HapII	CCGG	3 cut(s)	121, 144, 384
Hin1II	CATG	3 cut(s)	439, 878, 923
HinfI	GANTC	5 cut(s)	13, 165, 544, 947, 998
HpaII	CCGG	3 cut(s)	121, 144, 384
HphI	GGTGA	3 cut(s)	152, 488, 736
Hpy166II	GTNNAC	3 cut(s)	52, 336, 727
Hpy188I	TCNGA	4 cut(s)	75, 519, 555, 952
Hpy8I	GTNNAC	3 cut(s)	52, 336, 727
HpyAV	CCTTC	2 cut(s)	514, 1022
HpyCH4III	ACNGT	1 cut(s)	816
HpyCH4IV	ACGT	1 cut(s)	664
HpyCH4V	TGCA	9 cut(s)	23, 289, 295, 336, 623, 652, 709, 742, 930
HpyF10VI	GCNNNNNNNGC	6 cut(s)	35, 186, 254, 380, 389, 782
HpyF3I	CTNAG	2 cut(s)	80, 516
HpySE526I	ACGT	1 cut(s)	664
Hsp92II	CATG	3 cut(s)	439, 878, 923
Ksp22I	TGATCA	1 cut(s)	493
Kzo9I	GATC	2 cut(s)	109, 493
LmnI	GCTCC	1 cut(s)	199
Lsp1109I	GCAGC	3 cut(s)	360, 726, 788
LweI	GCATC	6 cut(s)	66, 334, 370, 639, 772, 853
MaeI	CTAG	1 cut(s)	500
MaeII	ACGT	1 cut(s)	664
MaeIII	GTNAC	4 cut(s)	41, 158, 980, 989
MalI	GATC	2 cut(s)	111, 495
MboI	GATC	2 cut(s)	109, 493
MboII	GAAGA	6 cut(s)	145, 275, 542, 847, 935, 965
MhlI	GDGCHC	1 cut(s)	338
MlsI	TGGCCA	1 cut(s)	873
MluCI	AATT	8 cut(s)	69, 342, 421, 549, 577, 798, 850, 906
MluNI	TGGCCA	1 cut(s)	873
MlyI	GAGTC	1 cut(s)	553
MnlI	CCTC	6 cut(s)	116, 227, 364, 742, 766, 909
Mox20I	TGGCCA	1 cut(s)	873
MscI	TGGCCA	1 cut(s)	873
MseI	TTAA	4 cut(s)	204, 576, 714, 840
MslI	CAYNNNNRTG	1 cut(s)	879
Msp20I	TGGCCA	1 cut(s)	873
MspCI	CTTAAG	1 cut(s)	203
MspI	CCGG	3 cut(s)	121, 144, 384
MspR9I	CCNGG	1 cut(s)	122
Mva1269I	GAATGC	2 cut(s)	703, 932
MwoI	GCNNNNNNNGC	6 cut(s)	35, 186, 254, 380, 389, 782
NciI	CCSGG	1 cut(s)	122
NdeI	CATATG	1 cut(s)	625
NdeII	GATC	2 cut(s)	109, 493
NlaIII	CATG	3 cut(s)	439, 878, 923
NmuCI	GTSAC	1 cut(s)	158
NspI	RCATGY	1 cut(s)	439
PctI	GAATGC	2 cut(s)	703, 932
PfeI	GAWTC	4 cut(s)	13, 165, 947, 998
PkrI	GCNGC	3 cut(s)	350, 741, 778
Ple19I	CGATCG	1 cut(s)	112
PleI	GAGTC	1 cut(s)	552
PpsI	GAGTC	1 cut(s)	552
PspPI	GGNCC	2 cut(s)	123, 669
PstI	CTGCAG	3 cut(s)	297, 711, 744
PstNI	CAGNNNCTG	1 cut(s)	785
PvuI	CGATCG	1 cut(s)	112
RsaI	GTAC	1 cut(s)	683
RsaNI	GTAC	1 cut(s)	682
RseI	CAYNNNNRTG	1 cut(s)	879
SaqAI	TTAA	4 cut(s)	204, 576, 714, 840
SatI	GCNGC	3 cut(s)	349, 740, 777
Sau3AI	GATC	2 cut(s)	109, 493
Sau96I	GGNCC	2 cut(s)	123, 669
SchI	GAGTC	1 cut(s)	553
ScrFI	CCNGG	1 cut(s)	122
SduI	GDGCHC	1 cut(s)	338
SfaNI	GCATC	6 cut(s)	66, 334, 370, 639, 772, 853
SfcI	CTRYAG	4 cut(s)	293, 480, 707, 740
SmiMI	CAYNNNNRTG	1 cut(s)	879
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	8 cut(s)	69, 342, 421, 549, 577, 798, 850, 906
SspMI	CTAG	1 cut(s)	500
StyD4I	CCNGG	1 cut(s)	120
TaaI	ACNGT	1 cut(s)	816
TaiI	ACGT	1 cut(s)	667
TaqI	TCGA	5 cut(s)	96, 108, 168, 465, 899
TasI	AATT	8 cut(s)	69, 342, 421, 549, 577, 798, 850, 906
TatI	WGTACW	1 cut(s)	681
TfiI	GAWTC	4 cut(s)	13, 165, 947, 998
Tru1I	TTAA	4 cut(s)	204, 576, 714, 840
Tru9I	TTAA	4 cut(s)	204, 576, 714, 840
TscAI	CASTG	2 cut(s)	433, 749
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	3 cut(s)	348, 739, 776
Tsp45I	GTSAC	1 cut(s)	158
TspDTI	ATGAA	3 cut(s)	543, 809, 936
TspGWI	ACGGA	3 cut(s)	146, 275, 744
TspRI	CASTG	2 cut(s)	433, 749
Vha464I	CTTAAG	1 cut(s)	203
VneI	GTGCAC	1 cut(s)	334
XapI	RAATTY	4 cut(s)	69, 421, 549, 798
XceI	RCATGY	1 cut(s)	439
XspI	CTAG	1 cut(s)	500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.