Rw2G039970

Ribose-phosphate pyrophosphokinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0009478
Physical Location & Seq
Reverse (-)
65447961 .. 65449041
1081 bp
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UTR
Exon/CDS
Intron
Rw2G039970.1

Sequence Viewer

Length: 489 bp
ATGGACAAGTCACAGAAGAAGCAAGTCTACTTGTTCTACTGCGCCGAATGCGAAGACCTTGCTCGCCAGGTCGCTTCTCAGTCAGACCTCATTACTCTCCAGACCATCAAATGGAGGAACTTTGATGATGGGTTTCCAAACATTTTCATCAACAATGCACAAGAACTTCGAGGCCAACATGTTGCCTTTCTTGCGTCCTTCAGCTCCCAAGGAGTTATCTTTGAGCAGCTGTCTGTAATATATGCACTCCCCAAGCTGTTTGTTGCATCCTTCTCTTTAGTATTGCCTTTCTTCCCAACCGGTTCCTTTGAACGAATGGAAGAAGAAGGGGATGTTGCAACTGCATTTACCATGGCGAGAATGTTGTCAAATATTCCCATATCAAAAGGTGGCCCAACCAGTTTAGTCATTTATGACATACATGCTTTACAGGTTTGTTTCGTTTTTGGTATTTCTCTTGTTCTGATTGACAGACTTCATAACATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pribosyltran Pribosyltran_N

Protein Analysis

162

Amino Acids

18.24

Weight (kDa)

5.27

Isoelectric Point (pI)

52.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pribosyltran_N PF13793 10 - 124 7.7e-08 N-terminal domain of ribose phosphate pyrophosphokinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 111
AccI GTMKAC 1 cut(s) 27
AcuI CTGAAG 1 cut(s) 184
AfiI CCNNNNNNNGG 1 cut(s) 111
AflIII ACRYGT 1 cut(s) 178
AgeI ACCGGT 1 cut(s) 299
AgsI TTSAA 1 cut(s) 311
AjnI CCWGG 1 cut(s) 66
AluBI AGCT 3 cut(s) 204, 229, 256
AluI AGCT 3 cut(s) 204, 229, 256
AoxI GGCC 2 cut(s) 172, 391
ApeKI GCWGC 1 cut(s) 226
AsiGI ACCGGT 1 cut(s) 299
AspLEI GCGC 1 cut(s) 44
AspS9I GGNCC 1 cut(s) 392
BarI GAAGNNNNNNTAC 2 cut(s) 11, 43
BbsI GAAGAC 1 cut(s) 60
BbvI GCAGC 1 cut(s) 238
BccI CCATC 2 cut(s) 113, 122
BcgI CGANNNNNNTGC 2 cut(s) 41, 75
BciT130I CCWGG 1 cut(s) 68
BisI GCNGC 1 cut(s) 227
BlsI GCNGC 1 cut(s) 228
Bme1390I CCNGG 1 cut(s) 68
BmgT120I GGNCC 1 cut(s) 392
BmiI GGNNCC 1 cut(s) 304
BmrFI CCNGG 1 cut(s) 68
BmsI GCATC 1 cut(s) 275
BpiI GAAGAC 1 cut(s) 60
BpmI CTGGAG 1 cut(s) 83
BsaJI CCNNGG 2 cut(s) 208, 351
BsaWI WCCGGW 1 cut(s) 299
Bsc4I CCNNNNNNNGG 1 cut(s) 111
Bse118I RCCGGY 1 cut(s) 299
Bse1I ACTGG 1 cut(s) 399
BseBI CCWGG 1 cut(s) 68
BseDI CCNNGG 2 cut(s) 208, 351
BseGI GGATG 2 cut(s) 266, 337
BseLI CCNNNNNNNGG 1 cut(s) 111
BseMII CTCAG 1 cut(s) 92
BseNI ACTGG 1 cut(s) 399
BseXI GCAGC 1 cut(s) 238
BshFI GGCC 2 cut(s) 174, 393
BshTI ACCGGT 1 cut(s) 299
BsiSI CCGG 1 cut(s) 300
BslI CCNNNNNNNGG 1 cut(s) 111
BsmI GAATGC 1 cut(s) 53
BsnI GGCC 2 cut(s) 174, 393
Bsp19I CCATGG 1 cut(s) 351
BspANI GGCC 2 cut(s) 174, 393
BspCNI CTCAG 1 cut(s) 91
BspLI GGNNCC 1 cut(s) 304
BsrFI RCCGGY 1 cut(s) 299
BsrI ACTGG 1 cut(s) 399
BssAI RCCGGY 1 cut(s) 299
BssECI CCNNGG 2 cut(s) 208, 351
BssT1I CCWWGG 2 cut(s) 208, 351
Bst2UI CCWGG 1 cut(s) 68
BstC8I GCNNGC 1 cut(s) 64
BstDEI CTNAG 1 cut(s) 78
BstDSI CCRYGG 1 cut(s) 351
BstF5I GGATG 2 cut(s) 266, 337
BstHHI GCGC 1 cut(s) 44
BstMWI GCNNNNNNNGC 2 cut(s) 48, 191
BstNI CCWGG 1 cut(s) 68
BstNSI RCATGY 2 cut(s) 182, 425
BstSCI CCNGG 1 cut(s) 66
BstV1I GCAGC 1 cut(s) 238
BstV2I GAAGAC 1 cut(s) 60
BsuRI GGCC 2 cut(s) 174, 393
BtgI CCRYGG 1 cut(s) 351
BtsCI GGATG 2 cut(s) 266, 337
Cac8I GCNNGC 1 cut(s) 64
CfoI GCGC 1 cut(s) 44
Cfr10I RCCGGY 1 cut(s) 299
Cfr13I GGNCC 1 cut(s) 392
CseI GACGC 1 cut(s) 183
CspAI ACCGGT 1 cut(s) 299
CviAII CATG 3 cut(s) 179, 352, 422
CviJI RGCY 5 cut(s) 174, 204, 229, 256, 393
CviKI_1 RGCY 5 cut(s) 174, 204, 229, 256, 393
DdeI CTNAG 1 cut(s) 78
Eco130I CCWWGG 2 cut(s) 208, 351
Eco57I CTGAAG 1 cut(s) 184
EcoRII CCWGG 1 cut(s) 66
EcoT14I CCWWGG 2 cut(s) 208, 351
ErhI CCWWGG 2 cut(s) 208, 351
FaeI CATG 3 cut(s) 182, 355, 425
FaiI YATR 9 cut(s) 180, 241, 243, 353, 380, 414, 419, 423, 480
FatI CATG 3 cut(s) 178, 351, 421
FblI GTMKAC 1 cut(s) 27
Fnu4HI GCNGC 1 cut(s) 227
FokI GGATG 2 cut(s) 253, 344
Fsp4HI GCNGC 1 cut(s) 227
GlaI GCGC 1 cut(s) 43
GluI GCNGC 1 cut(s) 227
GsuI CTGGAG 1 cut(s) 83
HaeIII GGCC 2 cut(s) 174, 393
HapII CCGG 1 cut(s) 300
HgaI GACGC 1 cut(s) 183
HhaI GCGC 1 cut(s) 44
Hin1II CATG 3 cut(s) 182, 355, 425
Hin6I GCGC 1 cut(s) 42
HinP1I GCGC 1 cut(s) 42
HpaII CCGG 1 cut(s) 300
Hpy166II GTNNAC 1 cut(s) 28
Hpy188I TCNGA 2 cut(s) 85, 465
Hpy188III TCNNGA 1 cut(s) 100
Hpy8I GTNNAC 1 cut(s) 28
HpyAV CCTTC 3 cut(s) 208, 280, 320
HpyCH4V TGCA 5 cut(s) 158, 245, 266, 338, 344
HpyF10VI GCNNNNNNNGC 2 cut(s) 48, 191
HpyF3I CTNAG 1 cut(s) 78
Hsp92II CATG 3 cut(s) 182, 355, 425
HspAI GCGC 1 cut(s) 42
LmnI GCTCC 1 cut(s) 209
LpnPI CCDG 6 cut(s) 53, 80, 113, 313, 412, 416
Lsp1109I GCAGC 1 cut(s) 238
LweI GCATC 1 cut(s) 275
MaeIII GTNAC 1 cut(s) 9
MboII GAAGA 5 cut(s) 28, 65, 283, 332, 335
MnlI CCTC 3 cut(s) 98, 108, 164
MseI TTAA 1 cut(s) 487
MspA1I CMGCKG 1 cut(s) 229
MspI CCGG 1 cut(s) 300
MspR9I CCNGG 1 cut(s) 68
Mva1269I GAATGC 1 cut(s) 53
MvaI CCWGG 1 cut(s) 68
MwoI GCNNNNNNNGC 2 cut(s) 48, 191
NcoI CCATGG 1 cut(s) 351
NlaIII CATG 3 cut(s) 182, 355, 425
NlaIV GGNNCC 1 cut(s) 304
NmuCI GTSAC 1 cut(s) 9
NspI RCATGY 2 cut(s) 182, 425
PciI ACATGT 1 cut(s) 178
PctI GAATGC 1 cut(s) 53
PflMI CCANNNNNTGG 1 cut(s) 111
PinAI ACCGGT 1 cut(s) 299
PkrI GCNGC 1 cut(s) 228
PscI ACATGT 1 cut(s) 178
Psp6I CCWGG 1 cut(s) 66
PspGI CCWGG 1 cut(s) 66
PspN4I GGNNCC 1 cut(s) 304
PspPI GGNCC 1 cut(s) 392
PvuII CAGCTG 1 cut(s) 229
SaqAI TTAA 1 cut(s) 487
SatI GCNGC 1 cut(s) 227
Sau96I GGNCC 1 cut(s) 392
ScrFI CCNGG 1 cut(s) 68
SetI ASST 8 cut(s) 60, 72, 90, 206, 231, 258, 391, 435
SfaNI GCATC 1 cut(s) 275
SspI AATATT 1 cut(s) 373
StyD4I CCNGG 1 cut(s) 66
StyI CCWWGG 2 cut(s) 208, 351
TaqI TCGA 1 cut(s) 169
Tru1I TTAA 1 cut(s) 487
Tru9I TTAA 1 cut(s) 487
TseFI GTSAC 1 cut(s) 9
TseI GCWGC 1 cut(s) 226
Tsp45I GTSAC 1 cut(s) 9
TspDTI ATGAA 2 cut(s) 136, 467
Van91I CCANNNNNTGG 1 cut(s) 111
XceI RCATGY 2 cut(s) 182, 425
XmiI GTMKAC 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.