Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0009478

Physical Location & Seq

Genomic Coordinates Reverse (-)

63922873 .. 63926385

Gene Structure 3513 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG474100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGACAAGTCACAGAAGAAGCAAGTCTACTTGTTCTACTGCGCCGAATGCGAAGACCTTGCTCGCCAGGTCGCTTCTCAGTCAGACCTCATTACTGTCCAGACCATCAAATGGAGGAACTTTGATGATGGGTTTCCAAACATTTTCATCAACAATGCACAAGAACTTCGAGGCCAACATGTTGCCTTTCTTGCGTCCTTCAGCTCCCAAGGAGTTATCTTTGAGCAGCTGTCTGTAATATATGCACTCCCCAAGCTGTTTGTTGCATCCTTCTCTTTAGTATTGCCTTTCTTCCCAACCGGTTCCTTTGAACGAATGGAAGAAGAAGGGGATGTTGCAACTGCATTTACCATGGCAAGAATGTTGTCAAATATTCCCATATCAAAAGGTGGCCCAACCAGTTTAGTCATTTATGACATACATGCTTTACAGGAAAGATTTTACTTTGGGGACCATGTTTTGCCTTTGTTTGAGACTGGAATCCCTCTCTTAAAGGAACGGCTCCACCAGCTTCCTGACTCTAATAAGATTGTTGTGGCATTTCCTGACGATGGAGCTTGGAAGCGATTTCACAAGCAGTTGGATCATTTTCCCATGGTTGTCTGTAATAAGGTTCGTGAAGGAGATAAGAGGATAGTTCGAATCAAGGAGGGAAATCCTGCAGGGTTTCATGTAGTCATTGTTGATGACTTGGTTCAATCTGGAGGCACCTTAATCGAGTGCCAGAAAGTTTTGGCAGCTCATGGTGCAGCCAAGGTTAGTGCTTATGTCACCCATGGAGTATTTCCTAAGCGTTCATGGGAGCGTTTCACTCACAAGAATGGAGAGTCGGAGAACCTGTTTGCCTACTTTTGGATCACAGATTCCTGCCCACTTACTGTCAAAGCCGTAGAAAATAAAGCACCCTTTGAGATCTTAAGTCTTGCAGGATCCATTGCTGATGCTCTACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pribosyltran Pribosyltran_N

Protein Analysis

317

Amino Acids

35.61

Weight (kDa)

6.21

Isoelectric Point (pI)

47.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pribosyltran_N	PF13793	10 - 124	7e-07	N-terminal domain of ribose phosphate pyrophosphokinase
Pribosyltran	PF00156	209 - 267	1.2e-08	Phosphoribosyl transferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42910
fragaria_vesca	FvH4_6g38260 FvH4_6g38260 FvH4_6g38260 FvH4_6g38260 FvH4_6g38260
malus_domestica	MD09G1151500.v1.1 MD17G1139200.v1.1
prunus_persica	Prupe.3G173100_v2.0.a1 Prupe.3G173100_v2.0.a1 Prupe.3G173100_v2.0.a1
pyrus_communis	pycom17g13230
rosa_chinensis	RchiOBHm_Chr2g0151521
rosa_laevigata	RLG00000020557
rosa_multiflora	Rmu_sc0000940.1_g000022
rosa_roxburghii	Rroxscaffold_2G00096380
rosa_rugosa	Rorug02G0426900
rosa_samantha	Rh2AG487600 Rh2BG500000 Rh2CG474100 Rh2DG511200
rosa_wichuraiana	Rw2G039970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	707
AccB7I	CCANNNNNTGG	1 cut(s)	111
AccI	GTMKAC	1 cut(s)	27
AclWI	GGATC	4 cut(s)	591, 863, 924, 937
AcuI	CTGAAG	1 cut(s)	184
AfiI	CCNNNNNNNGG	3 cut(s)	111, 551, 852
AflII	CTTAAG	1 cut(s)	916
AflIII	ACRYGT	1 cut(s)	178
AgeI	ACCGGT	1 cut(s)	299
AgsI	TTSAA	2 cut(s)	311, 698
AjnI	CCWGG	1 cut(s)	66
AluBI	AGCT	6 cut(s)	204, 229, 256, 511, 557, 740
AluI	AGCT	6 cut(s)	204, 229, 256, 511, 557, 740
Alw26I	GTCTC	1 cut(s)	467
AlwI	GGATC	4 cut(s)	591, 863, 924, 937
AoxI	GGCC	2 cut(s)	172, 391
ApeKI	GCWGC	3 cut(s)	226, 737, 749
AsiGI	ACCGGT	1 cut(s)	299
AspLEI	GCGC	1 cut(s)	44
AspS9I	GGNCC	2 cut(s)	392, 451
AsuHPI	GGTGA	1 cut(s)	763
AsuII	TTCGAA	1 cut(s)	640
AvaII	GGWCC	1 cut(s)	451
BamHI	GGATCC	1 cut(s)	929
BanI	GGYRCC	1 cut(s)	707
BarI	GAAGNNNNNNTAC	2 cut(s)	11, 43
BbsI	GAAGAC	1 cut(s)	60
BbvI	GCAGC	3 cut(s)	238, 749, 761
BccI	CCATC	3 cut(s)	113, 122, 545
BceAI	ACGGC	2 cut(s)	515, 872
BcgI	CGANNNNNNTGC	4 cut(s)	41, 75, 697, 731
BciT130I	CCWGG	1 cut(s)	68
BcoDI	GTCTC	1 cut(s)	467
BfmI	CTRYAG	1 cut(s)	660
BfrI	CTTAAG	1 cut(s)	916
BglII	AGATCT	1 cut(s)	912
BisI	GCNGC	3 cut(s)	227, 738, 750
BlsI	GCNGC	3 cut(s)	228, 739, 751
Bme1390I	CCNGG	1 cut(s)	68
Bme18I	GGWCC	1 cut(s)	451
BmgT120I	GGNCC	2 cut(s)	392, 451
BmiI	GGNNCC	5 cut(s)	304, 452, 503, 709, 931
BmrFI	CCNGG	1 cut(s)	68
BmsI	GCATC	2 cut(s)	275, 931
BpiI	GAAGAC	1 cut(s)	60
BpmI	CTGGAG	1 cut(s)	723
Bpu10I	CCTNAGC	1 cut(s)	789
Bpu14I	TTCGAA	1 cut(s)	640
BsaJI	CCNNGG	5 cut(s)	208, 351, 594, 753, 775
BsaWI	WCCGGW	1 cut(s)	299
BsaXI	ACNNNNNCTCC	2 cut(s)	824, 854
Bsc4I	CCNNNNNNNGG	3 cut(s)	111, 551, 852
Bse118I	RCCGGY	1 cut(s)	299
Bse1I	ACTGG	2 cut(s)	399, 481
Bse3DI	GCAATG	1 cut(s)	933
BseBI	CCWGG	1 cut(s)	68
BseDI	CCNNGG	5 cut(s)	208, 351, 594, 753, 775
BseGI	GGATG	2 cut(s)	266, 337
BseLI	CCNNNNNNNGG	3 cut(s)	111, 551, 852
BseMI	GCAATG	1 cut(s)	933
BseMII	CTCAG	1 cut(s)	92
BseNI	ACTGG	2 cut(s)	399, 481
BseXI	GCAGC	3 cut(s)	238, 749, 761
BsgI	GTGCAG	1 cut(s)	768
BshFI	GGCC	2 cut(s)	174, 393
BshNI	GGYRCC	1 cut(s)	707
BshTI	ACCGGT	1 cut(s)	299
BsiSI	CCGG	1 cut(s)	300
BslFI	GGGAC	1 cut(s)	464
BslI	CCNNNNNNNGG	3 cut(s)	111, 551, 852
BsmAI	GTCTC	1 cut(s)	467
BsmFI	GGGAC	1 cut(s)	464
BsmI	GAATGC	1 cut(s)	53
BsnI	GGCC	2 cut(s)	174, 393
Bsp119I	TTCGAA	1 cut(s)	640
Bsp143I	GATC	4 cut(s)	583, 855, 912, 929
Bsp19I	CCATGG	3 cut(s)	351, 594, 775
BspANI	GGCC	2 cut(s)	174, 393
BspCNI	CTCAG	1 cut(s)	91
BspLI	GGNNCC	5 cut(s)	304, 452, 503, 709, 931
BspMAI	CTGCAG	1 cut(s)	664
BspPI	GGATC	4 cut(s)	591, 863, 924, 937
BspT104I	TTCGAA	1 cut(s)	640
BspT107I	GGYRCC	1 cut(s)	707
BspTI	CTTAAG	1 cut(s)	916
BsrDI	GCAATG	1 cut(s)	933
BsrFI	RCCGGY	1 cut(s)	299
BsrI	ACTGG	2 cut(s)	399, 481
BssAI	RCCGGY	1 cut(s)	299
BssECI	CCNNGG	5 cut(s)	208, 351, 594, 753, 775
BssMI	GATC	4 cut(s)	583, 855, 912, 929
BssT1I	CCWWGG	5 cut(s)	208, 351, 594, 753, 775
Bst2UI	CCWGG	1 cut(s)	68
Bst4CI	ACNGT	2 cut(s)	97, 880
BstAFI	CTTAAG	1 cut(s)	916
BstBI	TTCGAA	1 cut(s)	640
BstC8I	GCNNGC	1 cut(s)	64
BstDEI	CTNAG	2 cut(s)	78, 789
BstDSI	CCRYGG	3 cut(s)	351, 594, 775
BstF5I	GGATG	2 cut(s)	266, 337
BstHHI	GCGC	1 cut(s)	44
BstKTI	GATC	4 cut(s)	586, 858, 915, 932
BstMAI	GTCTC	1 cut(s)	467
BstMBI	GATC	4 cut(s)	583, 855, 912, 929
BstMWI	GCNNNNNNNGC	4 cut(s)	48, 191, 508, 746
BstNI	CCWGG	1 cut(s)	68
BstNSI	RCATGY	2 cut(s)	182, 425
BstSCI	CCNGG	1 cut(s)	66
BstSFI	CTRYAG	1 cut(s)	660
BstV1I	GCAGC	3 cut(s)	238, 749, 761
BstV2I	GAAGAC	1 cut(s)	60
BstX2I	RGATCY	2 cut(s)	912, 929
BstYI	RGATCY	2 cut(s)	912, 929
BsuRI	GGCC	2 cut(s)	174, 393
BtgI	CCRYGG	3 cut(s)	351, 594, 775
BtsCI	GGATG	2 cut(s)	266, 337
Cac8I	GCNNGC	1 cut(s)	64
CfoI	GCGC	1 cut(s)	44
Cfr10I	RCCGGY	1 cut(s)	299
Cfr13I	GGNCC	2 cut(s)	392, 451
CseI	GACGC	1 cut(s)	183
CspAI	ACCGGT	1 cut(s)	299
CviAII	CATG	9 cut(s)	179, 352, 422, 455, 595, 671, 743, 776, 798
DdeI	CTNAG	2 cut(s)	78, 789
DpnI	GATC	4 cut(s)	585, 857, 914, 931
DpnII	GATC	4 cut(s)	583, 855, 912, 929
Eco130I	CCWWGG	5 cut(s)	208, 351, 594, 753, 775
Eco47I	GGWCC	1 cut(s)	451
Eco57I	CTGAAG	1 cut(s)	184
EcoRII	CCWGG	1 cut(s)	66
EcoT14I	CCWWGG	5 cut(s)	208, 351, 594, 753, 775
ErhI	CCWWGG	5 cut(s)	208, 351, 594, 753, 775
FaeI	CATG	9 cut(s)	182, 355, 425, 458, 598, 674, 746, 779, 801
FaqI	GGGAC	1 cut(s)	464
FatI	CATG	9 cut(s)	178, 351, 421, 454, 594, 670, 742, 775, 797
FblI	GTMKAC	1 cut(s)	27
Fnu4HI	GCNGC	3 cut(s)	227, 738, 750
FokI	GGATG	2 cut(s)	253, 344
Fsp4HI	GCNGC	3 cut(s)	227, 738, 750
GlaI	GCGC	1 cut(s)	43
GluI	GCNGC	3 cut(s)	227, 738, 750
GsuI	CTGGAG	1 cut(s)	723
HaeIII	GGCC	2 cut(s)	174, 393
HapII	CCGG	1 cut(s)	300
HgaI	GACGC	1 cut(s)	183
HhaI	GCGC	1 cut(s)	44
Hin1II	CATG	9 cut(s)	182, 355, 425, 458, 598, 674, 746, 779, 801
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HinfI	GANTC	5 cut(s)	480, 518, 642, 827, 863
HpaII	CCGG	1 cut(s)	300
HphI	GGTGA	1 cut(s)	763
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188I	TCNGA	2 cut(s)	85, 832
Hpy188III	TCNNGA	5 cut(s)	100, 515, 545, 617, 702
Hpy8I	GTNNAC	1 cut(s)	28
HpyAV	CCTTC	4 cut(s)	208, 280, 320, 614
HpyCH4III	ACNGT	2 cut(s)	97, 880
HpyCH4V	TGCA	8 cut(s)	158, 245, 266, 338, 344, 662, 749, 926
HpyF10VI	GCNNNNNNNGC	4 cut(s)	48, 191, 508, 746
HpyF3I	CTNAG	2 cut(s)	78, 789
Hsp92II	CATG	9 cut(s)	182, 355, 425, 458, 598, 674, 746, 779, 801
HspAI	GCGC	1 cut(s)	42
Kzo9I	GATC	4 cut(s)	583, 855, 912, 929
LmnI	GCTCC	4 cut(s)	209, 507, 554, 802
Lsp1109I	GCAGC	3 cut(s)	238, 749, 761
LweI	GCATC	2 cut(s)	275, 931
MaeIII	GTNAC	2 cut(s)	9, 769
MalI	GATC	4 cut(s)	585, 857, 914, 931
MboI	GATC	4 cut(s)	583, 855, 912, 929
MboII	GAAGA	5 cut(s)	28, 65, 283, 332, 335
MflI	RGATCY	2 cut(s)	912, 929
MlyI	GAGTC	2 cut(s)	512, 836
MmeI	TCCRAC	2 cut(s)	561, 810
MnlI	CCTC	7 cut(s)	98, 108, 164, 495, 624, 643, 698
MseI	TTAA	3 cut(s)	491, 713, 917
MslI	CAYNNNNRTG	1 cut(s)	819
MspA1I	CMGCKG	1 cut(s)	229
MspCI	CTTAAG	1 cut(s)	916
MspI	CCGG	1 cut(s)	300
MspR9I	CCNGG	1 cut(s)	68
Mva1269I	GAATGC	1 cut(s)	53
MvaI	CCWGG	1 cut(s)	68
MwoI	GCNNNNNNNGC	4 cut(s)	48, 191, 508, 746
NcoI	CCATGG	3 cut(s)	351, 594, 775
NdeII	GATC	4 cut(s)	583, 855, 912, 929
NlaIII	CATG	9 cut(s)	182, 355, 425, 458, 598, 674, 746, 779, 801
NlaIV	GGNNCC	5 cut(s)	304, 452, 503, 709, 931
NmuCI	GTSAC	2 cut(s)	9, 769
NspI	RCATGY	2 cut(s)	182, 425
NspV	TTCGAA	1 cut(s)	640
PciI	ACATGT	1 cut(s)	178
PctI	GAATGC	1 cut(s)	53
PfeI	GAWTC	3 cut(s)	480, 642, 863
PflMI	CCANNNNNTGG	1 cut(s)	111
PinAI	ACCGGT	1 cut(s)	299
PkrI	GCNGC	3 cut(s)	228, 739, 751
PleI	GAGTC	2 cut(s)	512, 835
PpsI	GAGTC	2 cut(s)	512, 835
PscI	ACATGT	1 cut(s)	178
Psp6I	CCWGG	1 cut(s)	66
PspGI	CCWGG	1 cut(s)	66
PspN4I	GGNNCC	5 cut(s)	304, 452, 503, 709, 931
PspPI	GGNCC	2 cut(s)	392, 451
PstI	CTGCAG	1 cut(s)	664
PsuI	RGATCY	2 cut(s)	912, 929
PvuII	CAGCTG	1 cut(s)	229
RseI	CAYNNNNRTG	1 cut(s)	819
SaqAI	TTAA	3 cut(s)	491, 713, 917
SatI	GCNGC	3 cut(s)	227, 738, 750
Sau3AI	GATC	4 cut(s)	583, 855, 912, 929
Sau96I	GGNCC	2 cut(s)	392, 451
SbfI	CCTGCAGG	1 cut(s)	664
SchI	GAGTC	2 cut(s)	512, 836
ScrFI	CCNGG	1 cut(s)	68
SdaI	CCTGCAGG	1 cut(s)	664
SfaNI	GCATC	2 cut(s)	275, 931
SfcI	CTRYAG	1 cut(s)	660
SfuI	TTCGAA	1 cut(s)	640
SinI	GGWCC	1 cut(s)	451
SmiMI	CAYNNNNRTG	1 cut(s)	819
SmlI	CTYRAG	1 cut(s)	916
SmoI	CTYRAG	1 cut(s)	916
Sse8387I	CCTGCAGG	1 cut(s)	664
SspI	AATATT	1 cut(s)	373
StyD4I	CCNGG	1 cut(s)	66
StyI	CCWWGG	5 cut(s)	208, 351, 594, 753, 775
TaaI	ACNGT	2 cut(s)	97, 880
TaqI	TCGA	3 cut(s)	169, 640, 717
TfiI	GAWTC	3 cut(s)	480, 642, 863
Tru1I	TTAA	3 cut(s)	491, 713, 917
Tru9I	TTAA	3 cut(s)	491, 713, 917
TseFI	GTSAC	2 cut(s)	9, 769
TseI	GCWGC	3 cut(s)	226, 737, 749
Tsp45I	GTSAC	2 cut(s)	9, 769
TspDTI	ATGAA	3 cut(s)	136, 659, 786
Van91I	CCANNNNNTGG	1 cut(s)	111
Vha464I	CTTAAG	1 cut(s)	916
VpaK11BI	GGWCC	1 cut(s)	451
XceI	RCATGY	2 cut(s)	182, 425
XmiI	GTMKAC	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.