AT2G43110

U3-containing 90S pre-ribosomal complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012458
Physical Location & Seq
Forward (+)
17922019 .. 17924542
2524 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G43110.2

Sequence Viewer

Length: 867 bp
ATGGCAACTACAGAGCTAAAACCCTCCGCCGTTAAAAACCCTAAAAGAAATCGAAGACCATCACATGGTCCGAAGAAAGATTTGAAGAAGAAGAAGACTAAGATTACTAAGAAGACTAAGAAGTCGAAAGCTCCCACCTTTGATAAGACCATTGAGAAGAGTAGAAGTAACGACCAGAAAACCGACAACGACGAAGACGAGCAACTGTATTCGGAACCGGTATCGGCCTCTGAGCAGCTCAACTACTTTTTGAATCATCTTGACTCCGCCATTGGTATCAAGGTTTCTTCTTTAGAGCTTGAACCCATTAAAGATACGTGTATAGTTGAGTTATCTCAAGGGTTGGATCAAGATGTAAGCAACTTGGGAGAACATATAAAGCTTTCTTGTGGGTCTTCATGGAGAGAGACTCTTTGTGAAGGAGAGTCACTTGAAAGGAAAGTTGAACCGGGAAACCCATCTGTTCTTGTTATTAGTTCCTCTGCTCTGAGATCTTTGGAACTTCTAAGGGGTTTGCATTCATTGACTAAGCAATGTCCAGCAGTGAAGTTGTTCTCAAAGCATTTGAAGGTTGAGGAACAGGTATCTCTGTTGAAGAAACGGGTTAATATTGGGAGTGGCACACCAAACAGGATCAAAAAGCTAGTCGACATAGAAGCTTTAGGGCTTTCGCGTTTAGATATGATTGTGATCGACATGCACCCAGATGTCAAGGGATTTTCCTTATTCACATTGCCTCAAGTCAGAGATGAGTTTTGGGATTTGTATAAAAACTGCTTCCACCAGAGAGTCCTAGAAGGAAGACTTCGTATCTGCATGTATGGTCCAAAGCCTTCTCCAAACCTAAAGAAGAAGAACAAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CMS1

Protein Analysis

288

Amino Acids

32.57

Weight (kDa)

9.52

Isoelectric Point (pI)

45.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CMS1 PF14617 31 - 194 1.7e-08 U3-containing 90S pre-ribosomal complex subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012458)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43110 AT2G43110
fragaria_vesca FvH4_4g11840 FvH4_6g25320
malus_domestica MD04G1034000.v1.1 MD13G1276400.v1.1
prunus_persica Prupe.1G180600_v2.0.a1
pyrus_communis pycom04g02840
rosa_chinensis RchiOBHm_Chr4g0409281
rosa_laevigata RLG00000008581
rosa_multiflora Rmu_sc0002377.1_g000010
rosa_roxburghii Rroxscaffold_5G00353750 Rroxscaffold_7G00195060
rosa_rugosa Rorug04G0092000
rosa_samantha Rh4AG155000 Rh4BG152700 Rh4CG164000 Rh4DG148100
rosa_wichuraiana Rw4G012660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 121
AccB7I CCANNNNNTGG 1 cut(s) 65
AccI GTMKAC 1 cut(s) 648
AccII CGCG 1 cut(s) 673
AciI CCGC 2 cut(s) 27, 267
AclWI GGATC 2 cut(s) 354, 641
AfiI CCNNNNNNNGG 1 cut(s) 65
AflIII ACRYGT 1 cut(s) 317
AgeI ACCGGT 1 cut(s) 217
AgsI TTSAA 7 cut(s) 85, 253, 302, 434, 446, 568, 595
AluBI AGCT 7 cut(s) 16, 131, 238, 298, 382, 643, 659
AluI AGCT 7 cut(s) 16, 131, 238, 298, 382, 643, 659
Alw26I GTCTC 1 cut(s) 401
AlwI GGATC 2 cut(s) 354, 641
AoxI GGCC 1 cut(s) 225
ApeKI GCWGC 1 cut(s) 235
ArsI GACNNNNNNTTYG 2 cut(s) 630, 662
AsiGI ACCGGT 1 cut(s) 217
Asp700I GAANNNNTTC 1 cut(s) 551
AspS9I GGNCC 2 cut(s) 68, 824
AsuC2I CCSGG 1 cut(s) 450
AvaII GGWCC 2 cut(s) 68, 824
BbsI GAAGAC 6 cut(s) 61, 101, 119, 201, 387, 808
BbvI GCAGC 1 cut(s) 247
BccI CCATC 2 cut(s) 67, 466
BceAI ACGGC 1 cut(s) 14
BcnI CCSGG 1 cut(s) 450
BcoDI GTCTC 1 cut(s) 401
BfaI CTAG 2 cut(s) 644, 794
BfmI CTRYAG 1 cut(s) 9
BglII AGATCT 1 cut(s) 491
BisI GCNGC 1 cut(s) 236
BlsI GCNGC 1 cut(s) 237
Bme1390I CCNGG 1 cut(s) 450
Bme18I GGWCC 2 cut(s) 68, 824
BmgT120I GGNCC 2 cut(s) 68, 824
BmiI GGNNCC 1 cut(s) 216
BmrFI CCNGG 1 cut(s) 450
BpiI GAAGAC 6 cut(s) 61, 101, 119, 201, 387, 808
BplI GAGNNNNNCTC 2 cut(s) 394, 426
BpuEI CTTGAG 2 cut(s) 321, 723
BpuMI CCSGG 1 cut(s) 450
BsaAI YACGTR 1 cut(s) 318
BsaBI GATNNNNATC 1 cut(s) 689
BsaWI WCCGGW 1 cut(s) 217
Bsc4I CCNNNNNNNGG 1 cut(s) 65
Bse118I RCCGGY 1 cut(s) 217
Bse3DI GCAATG 2 cut(s) 539, 731
Bse8I GATNNNNATC 1 cut(s) 689
BseJI GATNNNNATC 1 cut(s) 689
BseLI CCNNNNNNNGG 1 cut(s) 65
BseMI GCAATG 2 cut(s) 539, 731
BseMII CTCAG 2 cut(s) 222, 479
BseXI GCAGC 1 cut(s) 247
Bsh1236I CGCG 1 cut(s) 673
BshFI GGCC 1 cut(s) 227
BshTI ACCGGT 1 cut(s) 217
BsiSI CCGG 2 cut(s) 218, 449
BslI CCNNNNNNNGG 1 cut(s) 65
BsmAI GTCTC 1 cut(s) 401
BsmI GAATGC 1 cut(s) 517
BsnI GGCC 1 cut(s) 227
Bsp143I GATC 4 cut(s) 346, 491, 633, 690
BspACI CCGC 2 cut(s) 27, 267
BspANI GGCC 1 cut(s) 227
BspCNI CTCAG 2 cut(s) 223, 480
BspFNI CGCG 1 cut(s) 673
BspLI GGNNCC 1 cut(s) 216
BspPI GGATC 2 cut(s) 354, 641
BsrDI GCAATG 2 cut(s) 539, 731
BsrFI RCCGGY 1 cut(s) 217
BssAI RCCGGY 1 cut(s) 217
BssMI GATC 4 cut(s) 346, 491, 633, 690
Bst4CI ACNGT 1 cut(s) 207
Bst6I CTCTTC 1 cut(s) 152
BstBAI YACGTR 1 cut(s) 318
BstDEI CTNAG 7 cut(s) 99, 108, 117, 231, 488, 506, 528
BstFNI CGCG 1 cut(s) 673
BstKTI GATC 4 cut(s) 349, 494, 636, 693
BstMAI GTCTC 1 cut(s) 401
BstMBI GATC 4 cut(s) 346, 491, 633, 690
BstNSI RCATGY 2 cut(s) 700, 820
BstSCI CCNGG 1 cut(s) 448
BstSFI CTRYAG 1 cut(s) 9
BstUI CGCG 1 cut(s) 673
BstV1I GCAGC 1 cut(s) 247
BstV2I GAAGAC 6 cut(s) 61, 101, 119, 201, 387, 808
BstX2I RGATCY 1 cut(s) 491
BstYI RGATCY 1 cut(s) 491
BsuRI GGCC 1 cut(s) 227
BtsI GCAGTG 1 cut(s) 549
BtsIMutI CAGTG 1 cut(s) 549
Cfr10I RCCGGY 1 cut(s) 217
Cfr13I GGNCC 2 cut(s) 68, 824
CspAI ACCGGT 1 cut(s) 217
CviAII CATG 4 cut(s) 65, 399, 697, 817
DdeI CTNAG 7 cut(s) 99, 108, 117, 231, 488, 506, 528
DpnI GATC 4 cut(s) 348, 493, 635, 692
DpnII GATC 4 cut(s) 346, 491, 633, 690
DrdI GACNNNNNNGTC 1 cut(s) 121
DseDI GACNNNNNNGTC 1 cut(s) 121
Eam1104I CTCTTC 1 cut(s) 152
EarI CTCTTC 1 cut(s) 152
EciI GGCGGA 2 cut(s) 16, 256
Eco47I GGWCC 2 cut(s) 68, 824
FaeI CATG 4 cut(s) 68, 402, 700, 820
FalI AAGNNNNNCTT 2 cut(s) 789, 821
FatI CATG 4 cut(s) 64, 398, 696, 816
FblI GTMKAC 1 cut(s) 648
Fnu4HI GCNGC 1 cut(s) 236
Fsp4HI GCNGC 1 cut(s) 236
FspBI CTAG 2 cut(s) 644, 794
GluI GCNGC 1 cut(s) 236
HaeIII GGCC 1 cut(s) 227
HapII CCGG 2 cut(s) 218, 449
Hin1II CATG 4 cut(s) 68, 402, 700, 820
HincII GTYRAC 1 cut(s) 649
HindII GTYRAC 1 cut(s) 649
HindIII AAGCTT 2 cut(s) 380, 657
HinfI GANTC 5 cut(s) 253, 263, 409, 425, 789
HpaII CCGG 2 cut(s) 218, 449
Hpy166II GTNNAC 1 cut(s) 649
Hpy188I TCNGA 5 cut(s) 72, 214, 232, 489, 746
Hpy188III TCNNGA 2 cut(s) 260, 350
Hpy8I GTNNAC 1 cut(s) 649
Hpy99I CGWCG 1 cut(s) 194
HpyAV CCTTC 4 cut(s) 413, 562, 791, 843
HpyCH4III ACNGT 1 cut(s) 207
HpyCH4IV ACGT 1 cut(s) 317
HpyCH4V TGCA 3 cut(s) 517, 700, 816
HpyF3I CTNAG 7 cut(s) 99, 108, 117, 231, 488, 506, 528
HpySE526I ACGT 1 cut(s) 317
Hsp92II CATG 4 cut(s) 68, 402, 700, 820
Kzo9I GATC 4 cut(s) 346, 491, 633, 690
LmnI GCTCC 1 cut(s) 136
LpnPI CCDG 8 cut(s) 188, 231, 462, 552, 566, 616, 717, 797
Lsp1109I GCAGC 1 cut(s) 247
MaeI CTAG 2 cut(s) 644, 794
MaeII ACGT 1 cut(s) 317
MaeIII GTNAC 2 cut(s) 167, 426
MalI GATC 4 cut(s) 348, 493, 635, 692
MboI GATC 4 cut(s) 346, 491, 633, 690
MflI RGATCY 1 cut(s) 491
MlyI GAGTC 4 cut(s) 257, 403, 434, 798
MmeI TCCRAC 1 cut(s) 324
MnlI CCTC 5 cut(s) 34, 238, 490, 568, 747
MroXI GAANNNNTTC 1 cut(s) 551
MseI TTAA 3 cut(s) 33, 309, 606
MslI CAYNNNNRTG 1 cut(s) 705
MspI CCGG 2 cut(s) 218, 449
MspR9I CCNGG 1 cut(s) 450
Mva1269I GAATGC 1 cut(s) 517
MvnI CGCG 1 cut(s) 673
NciI CCSGG 1 cut(s) 450
NdeII GATC 4 cut(s) 346, 491, 633, 690
NlaIII CATG 4 cut(s) 68, 402, 700, 820
NlaIV GGNNCC 1 cut(s) 216
NmuCI GTSAC 1 cut(s) 426
NspI RCATGY 2 cut(s) 700, 820
PcsI WCGNNNNNNNCGW 1 cut(s) 195
PctI GAATGC 1 cut(s) 517
PdmI GAANNNNTTC 1 cut(s) 551
PfeI GAWTC 1 cut(s) 253
PflMI CCANNNNNTGG 1 cut(s) 65
PinAI ACCGGT 1 cut(s) 217
PkrI GCNGC 1 cut(s) 237
PleI GAGTC 4 cut(s) 257, 403, 433, 797
PpsI GAGTC 4 cut(s) 257, 403, 433, 797
Ppu21I YACGTR 1 cut(s) 318
PspN4I GGNNCC 1 cut(s) 216
PspPI GGNCC 2 cut(s) 68, 824
PsuI RGATCY 1 cut(s) 491
RseI CAYNNNNRTG 1 cut(s) 705
SalI GTCGAC 1 cut(s) 647
SaqAI TTAA 3 cut(s) 33, 309, 606
SatI GCNGC 1 cut(s) 236
Sau3AI GATC 4 cut(s) 346, 491, 633, 690
Sau96I GGNCC 2 cut(s) 68, 824
SchI GAGTC 4 cut(s) 257, 403, 434, 798
ScrFI CCNGG 1 cut(s) 450
SfcI CTRYAG 1 cut(s) 9
SinI GGWCC 2 cut(s) 68, 824
SmiMI CAYNNNNRTG 1 cut(s) 705
SmlI CTYRAG 2 cut(s) 336, 738
SmoI CTYRAG 2 cut(s) 336, 738
SsiI CCGC 2 cut(s) 27, 267
SspI AATATT 1 cut(s) 610
SspMI CTAG 2 cut(s) 644, 794
StyD4I CCNGG 1 cut(s) 448
TaaI ACNGT 1 cut(s) 207
TaiI ACGT 1 cut(s) 320
TaqI TCGA 4 cut(s) 52, 125, 648, 693
TfiI GAWTC 1 cut(s) 253
Tru1I TTAA 3 cut(s) 33, 309, 606
Tru9I TTAA 3 cut(s) 33, 309, 606
TscAI CASTG 1 cut(s) 549
TseFI GTSAC 1 cut(s) 426
TseI GCWGC 1 cut(s) 235
Tsp45I GTSAC 1 cut(s) 426
TspDTI ATGAA 2 cut(s) 387, 510
TspRI CASTG 1 cut(s) 549
Van91I CCANNNNNTGG 1 cut(s) 65
VpaK11BI GGWCC 2 cut(s) 68, 824
XceI RCATGY 2 cut(s) 700, 820
XmiI GTMKAC 1 cut(s) 648
XmnI GAANNNNTTC 1 cut(s) 551
XspI CTAG 2 cut(s) 644, 794
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.