Rorug04G0092000

U3-containing 90S pre-ribosomal complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0012458
Physical Location & Seq
Forward (+)
14192812 .. 14194170
1359 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0092000.1

Sequence Viewer

Length: 897 bp
ATGCATTACATGATCGAAAACCTTTGCTTTTATTTGAATCAGAAATGGAGTGATTACCATTTGGAGAACATGGTATTGGAGTTGCGAGAAGAAGAAATTAATAATTATAAAACTCAAGAGAAGGAAAGAAAAACCTTTGTTGCATTTGCGATTGATTCTGTTCCTGAGAGACGACCATTTCTCTATTCGAGGGACTTGGTGTATGTACGACCATCAGATAGGGATACTGAGCACTTCCAGGGTTTGATTTATCGCATTGCTAGGAGCAGTCTTCTATTTGTTGAATTTGAAGATGACTCCTATGAGTATCATTCTTCAACACAAAAATATGATGTCAGCTTCTCATTCAATAGAGTCTGTTTAAAAAGAGCTCACCAAGCAGTTAAAGCTGCATCAGAAGCTTTTTTTCGGAACTTCCGTTTTCCTGATTGTGTCTCCCGTCCAAGCATTCCCACTGCACCAGCACTGGTCTCTACCTTTCATAAACTTGATGAAGGTGAACTTTCTGCAGTTCATCAAATTTTTAACAGTCAGGGCTCACCACCTTACCTAGTAGCCGGTGAACTCTGTGTTGAGTTGAAAAACCTTTCTGAACCATCGAGGACTGGACTGGCTATTTGTGAAGCAATACTCCAGGTATATCAAATGTCACTAAAAAATCGTATCCTTATATGTTCGCCTAATAACAGGCGTTATGATGTGCTTCTGAGAAGCTTGATGGAAGTGATTCCAGAGTCGGATATGTTTCGAGCCAACGCCACATTCCGTGAGATAGAAGAGGCTGCCGCCATGCCAGTACACCGTGCCATCATGCCTTCACAAAGACCCTTATTTATCTTGTCCTCCAACCCAGCAACTCCGGAAATTCAGGGTGATTTCATCAACTTTCATGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CMS1

Protein Analysis

298

Amino Acids

34.66

Weight (kDa)

5.78

Isoelectric Point (pI)

63.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MOV-10_beta-barrel PF21634 39 - 114 5.4e-08 Helicase MOV-10, beta-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012458)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43110 AT2G43110
fragaria_vesca FvH4_4g11840 FvH4_6g25320
malus_domestica MD04G1034000.v1.1 MD13G1276400.v1.1
prunus_persica Prupe.1G180600_v2.0.a1
pyrus_communis pycom04g02840
rosa_chinensis RchiOBHm_Chr4g0409281
rosa_laevigata RLG00000008581
rosa_multiflora Rmu_sc0002377.1_g000010
rosa_roxburghii Rroxscaffold_5G00353750 Rroxscaffold_7G00195060
rosa_rugosa Rorug04G0092000
rosa_samantha Rh4AG155000 Rh4BG152700 Rh4CG164000 Rh4DG148100
rosa_wichuraiana Rw4G012660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 108
AccIII TCCGGA 1 cut(s) 859
AciI CCGC 1 cut(s) 786
AcsI RAATTY 3 cut(s) 284, 519, 864
AfaI GTAC 2 cut(s) 207, 798
AgsI TTSAA 6 cut(s) 37, 284, 290, 318, 349, 580
AjnI CCWGG 2 cut(s) 237, 633
AjuI GAANNNNNNNTTGG 4 cut(s) 59, 91, 746, 778
AluBI AGCT 5 cut(s) 339, 371, 389, 401, 714
AluI AGCT 5 cut(s) 339, 371, 389, 401, 714
Alw21I GWGCWC 2 cut(s) 234, 373
Alw26I GTCTC 3 cut(s) 163, 439, 475
Aor13HI TCCGGA 1 cut(s) 859
ApeKI GCWGC 2 cut(s) 389, 782
ApoI RAATTY 3 cut(s) 284, 519, 864
ArsI GACNNNNNNTTYG 2 cut(s) 600, 632
AseI ATTAAT 1 cut(s) 99
Asp700I GAANNNNTTC 1 cut(s) 726
AsuHPI GGTGA 5 cut(s) 365, 509, 531, 572, 884
BanII GRGCYC 2 cut(s) 373, 539
BbsI GAAGAC 1 cut(s) 263
Bbv12I GWGCWC 2 cut(s) 234, 373
BbvI GCAGC 2 cut(s) 376, 769
BccI CCATC 4 cut(s) 220, 604, 712, 815
BciT130I CCWGG 2 cut(s) 239, 635
BciVI GTATCC 2 cut(s) 217, 674
BcoDI GTCTC 3 cut(s) 163, 439, 475
BfaI CTAG 2 cut(s) 261, 551
BfmI CTRYAG 1 cut(s) 507
BfuI GTATCC 2 cut(s) 217, 674
BisI GCNGC 3 cut(s) 390, 783, 786
BlsI GCNGC 3 cut(s) 391, 784, 787
Bme1390I CCNGG 2 cut(s) 239, 635
BmrFI CCNGG 2 cut(s) 239, 635
BmsI GCATC 1 cut(s) 401
BpiI GAAGAC 1 cut(s) 263
BpmI CTGGAG 1 cut(s) 617
BpuEI CTTGAG 1 cut(s) 99
BsaI GGTCTC 1 cut(s) 475
BsaJI CCNNGG 1 cut(s) 238
BsaWI WCCGGW 1 cut(s) 859
Bse118I RCCGGY 1 cut(s) 557
Bse1I ACTGG 4 cut(s) 471, 610, 615, 794
Bse3DI GCAATG 1 cut(s) 255
BseAI TCCGGA 1 cut(s) 859
BseBI CCWGG 2 cut(s) 239, 635
BseDI CCNNGG 1 cut(s) 238
BseMI GCAATG 1 cut(s) 255
BseMII CTCAG 3 cut(s) 156, 219, 698
BseNI ACTGG 4 cut(s) 471, 610, 615, 794
BseXI GCAGC 2 cut(s) 376, 769
BseYI CCCAGC 1 cut(s) 850
BsgI GTGCAG 1 cut(s) 441
BsiHKAI GWGCWC 2 cut(s) 234, 373
BsiSI CCGG 2 cut(s) 558, 860
BslFI GGGAC 1 cut(s) 206
BsmAI GTCTC 3 cut(s) 163, 439, 475
BsmBI CGTCTC 1 cut(s) 163
BsmFI GGGAC 1 cut(s) 206
BsmI GAATGC 1 cut(s) 447
Bso31I GGTCTC 1 cut(s) 475
Bsp1286I GDGCHC 3 cut(s) 234, 373, 539
Bsp13I TCCGGA 1 cut(s) 859
Bsp143I GATC 1 cut(s) 12
BspACI CCGC 1 cut(s) 786
BspCNI CTCAG 3 cut(s) 157, 220, 699
BspEI TCCGGA 1 cut(s) 859
BspHI TCATGA 1 cut(s) 889
BspMAI CTGCAG 1 cut(s) 511
BspTNI GGTCTC 1 cut(s) 475
BsrDI GCAATG 1 cut(s) 255
BsrFI RCCGGY 1 cut(s) 557
BsrI ACTGG 4 cut(s) 471, 610, 615, 794
BssAI RCCGGY 1 cut(s) 557
BssECI CCNNGG 1 cut(s) 238
BssMI GATC 1 cut(s) 12
Bst2UI CCWGG 2 cut(s) 239, 635
Bst4CI ACNGT 2 cut(s) 530, 803
Bst6I CTCTTC 1 cut(s) 771
BstDEI CTNAG 3 cut(s) 165, 228, 707
BstKTI GATC 1 cut(s) 15
BstMAI GTCTC 3 cut(s) 163, 439, 475
BstMBI GATC 1 cut(s) 12
BstMWI GCNNNNNNNGC 3 cut(s) 377, 386, 398
BstNI CCWGG 2 cut(s) 239, 635
BstSCI CCNGG 2 cut(s) 237, 633
BstSFI CTRYAG 1 cut(s) 507
BstV1I GCAGC 2 cut(s) 376, 769
BstV2I GAAGAC 1 cut(s) 263
BsuI GTATCC 2 cut(s) 217, 674
BtsI GCAGTG 1 cut(s) 453
BtsIMutI CAGTG 2 cut(s) 453, 464
CciI TCATGA 1 cut(s) 889
Cfr10I RCCGGY 1 cut(s) 557
Csp6I GTAC 2 cut(s) 206, 797
CviAII CATG 5 cut(s) 10, 70, 790, 811, 890
CviQI GTAC 2 cut(s) 206, 797
DdeI CTNAG 3 cut(s) 165, 228, 707
DpnI GATC 1 cut(s) 14
DpnII GATC 1 cut(s) 12
DraI TTTAAA 1 cut(s) 363
Eam1104I CTCTTC 1 cut(s) 771
EarI CTCTTC 1 cut(s) 771
Ecl136II GAGCTC 1 cut(s) 371
Eco24I GRGCYC 2 cut(s) 373, 539
Eco31I GGTCTC 1 cut(s) 475
Eco53kI GAGCTC 1 cut(s) 371
EcoICRI GAGCTC 1 cut(s) 371
EcoRII CCWGG 2 cut(s) 237, 633
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 2 cut(s) 373, 539
Esp3I CGTCTC 1 cut(s) 163
FaeI CATG 5 cut(s) 13, 73, 793, 814, 893
FalI AAGNNNNNCTT 2 cut(s) 486, 518
FaqI GGGAC 1 cut(s) 206
FatI CATG 5 cut(s) 9, 69, 789, 810, 889
Fnu4HI GCNGC 3 cut(s) 390, 783, 786
FriOI GRGCYC 2 cut(s) 373, 539
Fsp4HI GCNGC 3 cut(s) 390, 783, 786
FspBI CTAG 2 cut(s) 261, 551
GluI GCNGC 3 cut(s) 390, 783, 786
GsaI CCCAGC 1 cut(s) 854
GsuI CTGGAG 1 cut(s) 617
HapII CCGG 2 cut(s) 558, 860
Hin1II CATG 5 cut(s) 13, 73, 793, 814, 893
HindIII AAGCTT 2 cut(s) 399, 712
HinfI GANTC 6 cut(s) 37, 155, 296, 354, 727, 734
HpaII CCGG 2 cut(s) 558, 860
HphI GGTGA 5 cut(s) 365, 509, 531, 572, 884
Hpy166II GTNNAC 3 cut(s) 500, 563, 799
Hpy188I TCNGA 7 cut(s) 42, 217, 397, 411, 592, 708, 739
Hpy188III TCNNGA 6 cut(s) 116, 164, 425, 731, 860, 890
Hpy8I GTNNAC 3 cut(s) 500, 563, 799
HpyAV CCTTC 3 cut(s) 115, 488, 825
HpyCH4III ACNGT 2 cut(s) 530, 803
HpyCH4V TGCA 5 cut(s) 4, 143, 392, 458, 509
HpyF10VI GCNNNNNNNGC 3 cut(s) 377, 386, 398
HpyF3I CTNAG 3 cut(s) 165, 228, 707
Hsp92II CATG 5 cut(s) 13, 73, 793, 814, 893
Kpn2I TCCGGA 1 cut(s) 859
Kzo9I GATC 1 cut(s) 12
LmnI GCTCC 1 cut(s) 264
Lsp1109I GCAGC 2 cut(s) 376, 769
LweI GCATC 1 cut(s) 401
MaeI CTAG 2 cut(s) 261, 551
MaeIII GTNAC 1 cut(s) 648
MalI GATC 1 cut(s) 14
MboI GATC 1 cut(s) 12
MboII GAAGA 6 cut(s) 101, 104, 263, 302, 306, 788
MhlI GDGCHC 3 cut(s) 234, 373, 539
MluCI AATT 5 cut(s) 96, 103, 284, 519, 864
MlyI GAGTC 3 cut(s) 290, 363, 743
MmeI TCCRAC 2 cut(s) 717, 870
MnlI CCTC 4 cut(s) 183, 594, 772, 853
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 859
MroXI GAANNNNTTC 1 cut(s) 726
MseI TTAA 4 cut(s) 99, 362, 384, 525
MspI CCGG 2 cut(s) 558, 860
MspR9I CCNGG 2 cut(s) 239, 635
Mva1269I GAATGC 1 cut(s) 447
MvaI CCWGG 2 cut(s) 239, 635
MwoI GCNNNNNNNGC 3 cut(s) 377, 386, 398
NdeII GATC 1 cut(s) 12
NlaIII CATG 5 cut(s) 13, 73, 793, 814, 893
NmuCI GTSAC 1 cut(s) 648
NsiI ATGCAT 1 cut(s) 6
PagI TCATGA 1 cut(s) 889
PcsI WCGNNNNNNNCGW 1 cut(s) 415
PctI GAATGC 1 cut(s) 447
PdmI GAANNNNTTC 1 cut(s) 726
PfeI GAWTC 3 cut(s) 37, 155, 727
PkrI GCNGC 3 cut(s) 391, 784, 787
PleI GAGTC 3 cut(s) 290, 362, 742
PpsI GAGTC 3 cut(s) 290, 362, 742
PshBI ATTAAT 1 cut(s) 99
PsiI TTATAA 1 cut(s) 108
Psp124BI GAGCTC 1 cut(s) 373
Psp6I CCWGG 2 cut(s) 237, 633
PspFI CCCAGC 1 cut(s) 850
PspGI CCWGG 2 cut(s) 237, 633
PstI CTGCAG 1 cut(s) 511
RsaI GTAC 2 cut(s) 207, 798
RsaNI GTAC 2 cut(s) 206, 797
SacI GAGCTC 1 cut(s) 373
SaqAI TTAA 4 cut(s) 99, 362, 384, 525
SatI GCNGC 3 cut(s) 390, 783, 786
Sau3AI GATC 1 cut(s) 12
SchI GAGTC 3 cut(s) 290, 363, 743
ScrFI CCNGG 2 cut(s) 239, 635
SduI GDGCHC 3 cut(s) 234, 373, 539
SfaNI GCATC 1 cut(s) 401
SfcI CTRYAG 1 cut(s) 507
SmlI CTYRAG 1 cut(s) 114
SmoI CTYRAG 1 cut(s) 114
Sse9I AATT 5 cut(s) 96, 103, 284, 519, 864
SsiI CCGC 1 cut(s) 786
SspMI CTAG 2 cut(s) 261, 551
SstI GAGCTC 1 cut(s) 373
StyD4I CCNGG 2 cut(s) 237, 633
TaaI ACNGT 2 cut(s) 530, 803
TaqI TCGA 4 cut(s) 15, 188, 599, 748
TasI AATT 5 cut(s) 96, 103, 284, 519, 864
TatI WGTACW 1 cut(s) 796
TauI GCSGC 1 cut(s) 788
TfiI GAWTC 3 cut(s) 37, 155, 727
Tru1I TTAA 4 cut(s) 99, 362, 384, 525
Tru9I TTAA 4 cut(s) 99, 362, 384, 525
TscAI CASTG 2 cut(s) 460, 471
TseFI GTSAC 1 cut(s) 648
TseI GCWGC 2 cut(s) 389, 782
Tsp45I GTSAC 1 cut(s) 648
TspDTI ATGAA 5 cut(s) 470, 503, 507, 868, 878
TspGWI ACGGA 2 cut(s) 407, 755
TspRI CASTG 2 cut(s) 460, 471
VspI ATTAAT 1 cut(s) 99
XapI RAATTY 3 cut(s) 284, 519, 864
XmnI GAANNNNTTC 1 cut(s) 726
XspI CTAG 2 cut(s) 261, 551
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.