Prupe.1G180600_v2.0.a1

U3-containing 90S pre-ribosomal complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0012458
Physical Location & Seq
Reverse (-)
15738706 .. 15742762
4057 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G180600.1

Sequence Viewer

Length: 879 bp
ATGGCGAGCGGAAAAGCAAAGAACCTTTCAAAGCTGTCTCTCAGAAACCCTAAGAATAAGGGTAAGCCGCTTGGGCCCAACAACACCAAGAGGCAGAAGGAGAAGAAGAAGAAGCAACGGGTCAACAATCAAAACCCAATCGAAGACAAAGCTACCAATCAAAACACCCAAAACAGCAACAACAACAACAGTTTGAGCAATGCTACGAAGGCACAACCGGCATCGGCTTCAGCCCAGCTCAGCTTCTTTCTGGATCAATTTCAATCTGGCAATGGCGTTAAGATTTCTTCTCTCGAGTTGGAGTCCGTCAATGACAAGTGTATTCTGGATCTGTCTGAAAGCTTGGATCAAGATGTCACCCTCTTGGGGAAACATGTGATGGCAGCTTTTGGTCCATCATGGAAAGAAGAACTTTGTGAAAAGCATCTCTTGAATGGAAAAATTGATCCTGGTAGTCCGGCAATTCTTATTATTAGTACATCTGCCCTGAGGTCAATAGAACTTCTAAGGGGCTTGCGGGCGTTGACTAAAGAATGCCATGCAGCAAAGCTGTTCTCTAAGCATATGAAGGTTGAAGAACAGGTATCCTTGTTAAAGAACCGCGTTAATATCGCTAGTGGTACGCCAAACAGGATAAAGAAGCTAATTGACATTGAGGCATTGGGGCTGTCTCGGCTATCAGTGATTGTACTGGACACGCACCCAGATGTCAAGGGGTATTCCCTCTTTACGCTTCCACAAGTCAGAGATGAATTCTGGGACTTGTATAAGAGCTATTTTCATGATCGTCTACTCCAGGGTTCTTTGCGTCTTGGTTTGTACGGTCCATTATCATCTGGGAATGAGCTTAAAGGGAAAAAGAGGAGCCATATTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CMS1

Protein Analysis

293

Amino Acids

32.39

Weight (kDa)

9.72

Isoelectric Point (pI)

37.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012458)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43110 AT2G43110
fragaria_vesca FvH4_4g11840 FvH4_6g25320
malus_domestica MD04G1034000.v1.1 MD13G1276400.v1.1
prunus_persica Prupe.1G180600_v2.0.a1
pyrus_communis pycom04g02840
rosa_chinensis RchiOBHm_Chr4g0409281
rosa_laevigata RLG00000008581
rosa_multiflora Rmu_sc0002377.1_g000010
rosa_roxburghii Rroxscaffold_5G00353750 Rroxscaffold_7G00195060
rosa_rugosa Rorug04G0092000
rosa_samantha Rh4AG155000 Rh4BG152700 Rh4CG164000 Rh4DG148100
rosa_wichuraiana Rw4G012660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 9
AccI GTMKAC 1 cut(s) 790
AccII CGCG 1 cut(s) 603
AciI CCGC 4 cut(s) 9, 68, 517, 601
AclWI GGATC 4 cut(s) 261, 336, 354, 440
AcsI RAATTY 1 cut(s) 752
AcuI CTGAAG 1 cut(s) 213
AfaI GTAC 4 cut(s) 478, 622, 690, 821
AfiI CCNNNNNNNGG 1 cut(s) 366
AflIII ACRYGT 1 cut(s) 373
AgsI TTSAA 5 cut(s) 30, 263, 433, 575, 875
AjnI CCWGG 2 cut(s) 448, 795
Alw26I GTCTC 2 cut(s) 42, 675
AlwI GGATC 4 cut(s) 261, 336, 354, 440
Ama87I CYCGRG 1 cut(s) 293
AoxI GGCC 1 cut(s) 74
ApaI GGGCCC 1 cut(s) 78
ApeKI GCWGC 2 cut(s) 383, 542
ApoI RAATTY 1 cut(s) 752
AspS9I GGNCC 4 cut(s) 74, 75, 392, 824
AsuHPI GGTGA 1 cut(s) 349
AvaI CYCGRG 1 cut(s) 293
AvaII GGWCC 2 cut(s) 392, 824
AxyI CCTNAGG 1 cut(s) 488
BaeGI GKGCMC 1 cut(s) 78
BanII GRGCYC 1 cut(s) 78
BbsI GAAGAC 1 cut(s) 150
BbvI GCAGC 2 cut(s) 395, 554
BccI CCATC 2 cut(s) 373, 403
BciT130I CCWGG 2 cut(s) 450, 797
BciVI GTATCC 1 cut(s) 595
BcoDI GTCTC 2 cut(s) 42, 675
BfaI CTAG 1 cut(s) 615
BfuI GTATCC 1 cut(s) 595
BglI GCCNNNNNGGC 1 cut(s) 73
BisI GCNGC 3 cut(s) 68, 384, 543
BlpI GCTNAGC 1 cut(s) 239
BlsI GCNGC 3 cut(s) 69, 385, 544
Bme1390I CCNGG 2 cut(s) 450, 797
Bme18I GGWCC 2 cut(s) 392, 824
BmeT110I CYCGRG 1 cut(s) 293
BmgT120I GGNCC 4 cut(s) 74, 75, 392, 824
BmiI GGNNCC 2 cut(s) 76, 866
BmrFI CCNGG 2 cut(s) 450, 797
BmsI GCATC 2 cut(s) 230, 433
BpiI GAAGAC 1 cut(s) 150
BpmI CTGGAG 1 cut(s) 779
Bpu1102I GCTNAGC 1 cut(s) 239
BsaJI CCNNGG 1 cut(s) 796
Bsc4I CCNNNNNNNGG 1 cut(s) 366
Bse118I RCCGGY 1 cut(s) 217
Bse1I ACTGG 1 cut(s) 696
Bse21I CCTNAGG 1 cut(s) 488
Bse3DI GCAATG 2 cut(s) 205, 277
BseBI CCWGG 2 cut(s) 450, 797
BseDI CCNNGG 1 cut(s) 796
BseLI CCNNNNNNNGG 1 cut(s) 366
BseMI GCAATG 2 cut(s) 205, 277
BseMII CTCAG 3 cut(s) 55, 253, 479
BseNI ACTGG 1 cut(s) 696
BseRI GAGGAG 1 cut(s) 877
BseSI GKGCMC 1 cut(s) 78
BseXI GCAGC 2 cut(s) 395, 554
BseYI CCCAGC 1 cut(s) 234
Bsh1236I CGCG 1 cut(s) 603
BshFI GGCC 1 cut(s) 76
BsiHKCI CYCGRG 1 cut(s) 293
BsiSI CCGG 2 cut(s) 218, 458
BslFI GGGAC 1 cut(s) 773
BslI CCNNNNNNNGG 1 cut(s) 366
BsmAI GTCTC 2 cut(s) 42, 675
BsmFI GGGAC 1 cut(s) 773
BsmI GAATGC 1 cut(s) 539
BsnI GGCC 1 cut(s) 76
BsoBI CYCGRG 1 cut(s) 293
Bsp120I GGGCCC 1 cut(s) 74
Bsp1286I GDGCHC 1 cut(s) 78
Bsp143I GATC 5 cut(s) 253, 328, 346, 445, 784
Bsp1720I GCTNAGC 1 cut(s) 239
BspACI CCGC 4 cut(s) 9, 68, 517, 601
BspANI GGCC 1 cut(s) 76
BspCNI CTCAG 3 cut(s) 54, 252, 480
BspFNI CGCG 1 cut(s) 603
BspHI TCATGA 1 cut(s) 781
BspLI GGNNCC 2 cut(s) 76, 866
BspPI GGATC 4 cut(s) 261, 336, 354, 440
BsrBI CCGCTC 1 cut(s) 9
BsrDI GCAATG 2 cut(s) 205, 277
BsrFI RCCGGY 1 cut(s) 217
BsrI ACTGG 1 cut(s) 696
BssAI RCCGGY 1 cut(s) 217
BssECI CCNNGG 1 cut(s) 796
BssMI GATC 5 cut(s) 253, 328, 346, 445, 784
Bst2UI CCWGG 2 cut(s) 450, 797
Bst4CI ACNGT 2 cut(s) 191, 824
BstC8I GCNNGC 3 cut(s) 7, 515, 519
BstDEI CTNAG 6 cut(s) 41, 51, 239, 488, 506, 558
BstFNI CGCG 1 cut(s) 603
BstKTI GATC 5 cut(s) 256, 331, 349, 448, 787
BstMAI GTCTC 2 cut(s) 42, 675
BstMBI GATC 5 cut(s) 253, 328, 346, 445, 784
BstMWI GCNNNNNNNGC 4 cut(s) 73, 209, 218, 673
BstNI CCWGG 2 cut(s) 450, 797
BstNSI RCATGY 1 cut(s) 377
BstSCI CCNGG 2 cut(s) 448, 795
BstSLI GKGCMC 1 cut(s) 78
BstUI CGCG 1 cut(s) 603
BstV1I GCAGC 2 cut(s) 395, 554
BstV2I GAAGAC 1 cut(s) 150
BstX2I RGATCY 1 cut(s) 328
BstYI RGATCY 1 cut(s) 328
Bsu36I CCTNAGG 1 cut(s) 488
BsuI GTATCC 1 cut(s) 595
BsuRI GGCC 1 cut(s) 76
BtsIMutI CAGTG 1 cut(s) 687
Cac8I GCNNGC 3 cut(s) 7, 515, 519
CciI TCATGA 1 cut(s) 781
Cfr10I RCCGGY 1 cut(s) 217
Cfr13I GGNCC 4 cut(s) 74, 75, 392, 824
CseI GACGC 1 cut(s) 797
Csp6I GTAC 4 cut(s) 477, 621, 689, 820
CviAII CATG 4 cut(s) 374, 399, 539, 782
CviQI GTAC 4 cut(s) 477, 621, 689, 820
DdeI CTNAG 6 cut(s) 41, 51, 239, 488, 506, 558
DpnI GATC 5 cut(s) 255, 330, 348, 447, 786
DpnII GATC 5 cut(s) 253, 328, 346, 445, 784
Eco24I GRGCYC 1 cut(s) 78
Eco47I GGWCC 2 cut(s) 392, 824
Eco57I CTGAAG 1 cut(s) 213
Eco81I CCTNAGG 1 cut(s) 488
Eco88I CYCGRG 1 cut(s) 293
EcoRI GAATTC 1 cut(s) 752
EcoRII CCWGG 2 cut(s) 448, 795
EcoT38I GRGCYC 1 cut(s) 78
FaeI CATG 4 cut(s) 377, 402, 542, 785
FaiI YATR 8 cut(s) 375, 400, 540, 564, 566, 768, 783, 870
FalI AAGNNNNNCTT 4 cut(s) 396, 428, 413, 445
FaqI GGGAC 1 cut(s) 773
FatI CATG 4 cut(s) 373, 398, 538, 781
FauI CCCGC 1 cut(s) 510
FauNDI CATATG 1 cut(s) 564
FblI GTMKAC 1 cut(s) 790
Fnu4HI GCNGC 3 cut(s) 68, 384, 543
FriOI GRGCYC 1 cut(s) 78
Fsp4HI GCNGC 3 cut(s) 68, 384, 543
FspBI CTAG 1 cut(s) 615
GluI GCNGC 3 cut(s) 68, 384, 543
GsaI CCCAGC 1 cut(s) 238
GsuI CTGGAG 1 cut(s) 779
HaeIII GGCC 1 cut(s) 76
HapII CCGG 2 cut(s) 218, 458
HgaI GACGC 1 cut(s) 797
Hin1II CATG 4 cut(s) 377, 402, 542, 785
HincII GTYRAC 2 cut(s) 124, 525
HindII GTYRAC 2 cut(s) 124, 525
HindIII AAGCTT 1 cut(s) 340
HinfI GANTC 1 cut(s) 302
HpaII CCGG 2 cut(s) 218, 458
HphI GGTGA 1 cut(s) 349
Hpy166II GTNNAC 3 cut(s) 124, 525, 791
Hpy188I TCNGA 3 cut(s) 44, 337, 746
Hpy188III TCNNGA 6 cut(s) 251, 293, 326, 350, 430, 782
Hpy8I GTNNAC 3 cut(s) 124, 525, 791
HpyAV CCTTC 3 cut(s) 91, 202, 562
HpyCH4III ACNGT 2 cut(s) 191, 824
HpyCH4V TGCA 1 cut(s) 542
HpyF10VI GCNNNNNNNGC 4 cut(s) 73, 209, 218, 673
HpyF3I CTNAG 6 cut(s) 41, 51, 239, 488, 506, 558
Hsp92II CATG 4 cut(s) 377, 402, 542, 785
Kzo9I GATC 5 cut(s) 253, 328, 346, 445, 784
LmnI GCTCC 1 cut(s) 864
Lsp1109I GCAGC 2 cut(s) 395, 554
LweI GCATC 2 cut(s) 230, 433
MaeI CTAG 1 cut(s) 615
MaeIII GTNAC 1 cut(s) 355
MalI GATC 5 cut(s) 255, 330, 348, 447, 786
MbiI CCGCTC 1 cut(s) 9
MboI GATC 5 cut(s) 253, 328, 346, 445, 784
MboII GAAGA 7 cut(s) 115, 118, 121, 155, 279, 419, 587
MflI RGATCY 1 cut(s) 328
MhlI GDGCHC 1 cut(s) 78
MluCI AATT 5 cut(s) 257, 441, 462, 645, 752
MlyI GAGTC 1 cut(s) 311
MmeI TCCRAC 1 cut(s) 279
MnlI CCTC 6 cut(s) 84, 371, 483, 649, 734, 855
MseI TTAA 4 cut(s) 279, 593, 606, 849
MslI CAYNNNNRTG 1 cut(s) 705
MspI CCGG 2 cut(s) 218, 458
MspR9I CCNGG 2 cut(s) 450, 797
Mva1269I GAATGC 1 cut(s) 539
MvaI CCWGG 2 cut(s) 450, 797
MvnI CGCG 1 cut(s) 603
MwoI GCNNNNNNNGC 4 cut(s) 73, 209, 218, 673
NdeI CATATG 1 cut(s) 564
NdeII GATC 5 cut(s) 253, 328, 346, 445, 784
NlaIII CATG 4 cut(s) 377, 402, 542, 785
NlaIV GGNNCC 2 cut(s) 76, 866
NmeAIII GCCGAG 1 cut(s) 652
NmuCI GTSAC 1 cut(s) 355
NspI RCATGY 1 cut(s) 377
PaeR7I CTCGAG 1 cut(s) 293
PagI TCATGA 1 cut(s) 781
PciI ACATGT 1 cut(s) 373
PctI GAATGC 1 cut(s) 539
PkrI GCNGC 3 cut(s) 69, 385, 544
PleI GAGTC 1 cut(s) 310
PpsI GAGTC 1 cut(s) 310
PscI ACATGT 1 cut(s) 373
Psp6I CCWGG 2 cut(s) 448, 795
PspFI CCCAGC 1 cut(s) 234
PspGI CCWGG 2 cut(s) 448, 795
PspN4I GGNNCC 2 cut(s) 76, 866
PspOMI GGGCCC 1 cut(s) 74
PspPI GGNCC 4 cut(s) 74, 75, 392, 824
PsuI RGATCY 1 cut(s) 328
RsaI GTAC 4 cut(s) 478, 622, 690, 821
RsaNI GTAC 4 cut(s) 477, 621, 689, 820
RseI CAYNNNNRTG 1 cut(s) 705
SaqAI TTAA 4 cut(s) 279, 593, 606, 849
SatI GCNGC 3 cut(s) 68, 384, 543
Sau3AI GATC 5 cut(s) 253, 328, 346, 445, 784
Sau96I GGNCC 4 cut(s) 74, 75, 392, 824
SchI GAGTC 1 cut(s) 311
ScrFI CCNGG 2 cut(s) 450, 797
SduI GDGCHC 1 cut(s) 78
SfaNI GCATC 2 cut(s) 230, 433
Sfr274I CTCGAG 1 cut(s) 293
SinI GGWCC 2 cut(s) 392, 824
SlaI CTCGAG 1 cut(s) 293
SmiMI CAYNNNNRTG 1 cut(s) 705
SmlI CTYRAG 1 cut(s) 293
SmoI CTYRAG 1 cut(s) 293
Sse9I AATT 5 cut(s) 257, 441, 462, 645, 752
SsiI CCGC 4 cut(s) 9, 68, 517, 601
SspMI CTAG 1 cut(s) 615
StyD4I CCNGG 2 cut(s) 448, 795
TaaI ACNGT 2 cut(s) 191, 824
TaqI TCGA 2 cut(s) 141, 294
TasI AATT 5 cut(s) 257, 441, 462, 645, 752
TatI WGTACW 2 cut(s) 476, 688
TauI GCSGC 1 cut(s) 70
Tru1I TTAA 4 cut(s) 279, 593, 606, 849
Tru9I TTAA 4 cut(s) 279, 593, 606, 849
TscAI CASTG 1 cut(s) 687
TseFI GTSAC 1 cut(s) 355
TseI GCWGC 2 cut(s) 383, 542
Tsp45I GTSAC 1 cut(s) 355
TspDTI ATGAA 3 cut(s) 581, 765, 770
TspGWI ACGGA 1 cut(s) 295
TspRI CASTG 1 cut(s) 687
VpaK11BI GGWCC 2 cut(s) 392, 824
XapI RAATTY 1 cut(s) 752
XceI RCATGY 1 cut(s) 377
XhoI CTCGAG 1 cut(s) 293
XmiI GTMKAC 1 cut(s) 790
XspI CTAG 1 cut(s) 615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.