FvH4_4g11840

U3-containing 90S pre-ribosomal complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0012458
Physical Location & Seq
Reverse (-)
15563906 .. 15569311
5406 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g11840.t1

Sequence Viewer

Length: 795 bp
ATGGGGAGCCGGAAAGAAAGGAACAACTCTGTCAAGAAGAAGAACAAGGGCAACCCGCTTGGCCCCAAAACAACCAAACTTAAACCCCATGCCACCACCAACAACAAGAATACCCAAATCGAAGCTCAACCCATCGAAAAGCTACAACCGTCGGCACAGCTCAACTTGTTCCTCGACAAATTTCAGTCTGCCAATCATCTCAAGCTCTCTTCTCTCGAATTGGACTCCCTCACTGATAAATGTATTGTGGACATGTCTACGGATCAAGATGTCGAAAGCTTGGGGAAACGTGTCAAGGCAGCTTTTGGGCCGTCATGGAAGGAGGAACTATGTGATAAGCGTCTCTTGGAAGGAAAAGTCGATCCAGGGAGCCCCGCAGTTCTTATTATTAGCACATCCGCCTTGAGATCAATAGAACTTCTAAGGGGCTTTCGGTCGCTGACTAAAGAATGCCACGCAGTGAAGCTGTTCTCGAAGCATATGAAGGTTGACGAACAGGTCTCATTGTTGAAGGATCGTGTTAACATCGCTAGTGGTACACCAAACAGGATAAAGAAGCTAATTGACATTGAGGCATTGGGGCTGTCACGGTTATCAATGATTGTGCTTGATGTGCACCCAGATGTCAAGGGCTATTCACTGTTGACGCTTCCGCAAGTCAGTGATGAATTTTGGGACTTGTACAAGACCTACTTTCACCAGCGATTACTCCAAGAGTCCTTGCGTCTCTCTCTTTATGGTCCATTAAAATCTGATAACGAGTTCAAGGGAAAAAAGAAAAGACCCAATGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CMS1

Protein Analysis

265

Amino Acids

29.79

Weight (kDa)

9.56

Isoelectric Point (pI)

39.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CMS1 PF14617 5 - 227 1.8e-26 U3-containing 90S pre-ribosomal complex subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012458)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43110 AT2G43110
fragaria_vesca FvH4_4g11840 FvH4_6g25320
malus_domestica MD04G1034000.v1.1 MD13G1276400.v1.1
prunus_persica Prupe.1G180600_v2.0.a1
pyrus_communis pycom04g02840
rosa_chinensis RchiOBHm_Chr4g0409281
rosa_laevigata RLG00000008581
rosa_multiflora Rmu_sc0002377.1_g000010
rosa_roxburghii Rroxscaffold_5G00353750 Rroxscaffold_7G00195060
rosa_rugosa Rorug04G0092000
rosa_samantha Rh4AG155000 Rh4BG152700 Rh4CG164000 Rh4DG148100
rosa_wichuraiana Rw4G012660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 497
AccI GTMKAC 1 cut(s) 257
AciI CCGC 4 cut(s) 56, 375, 399, 653
AclWI GGATC 3 cut(s) 270, 356, 522
AcsI RAATTY 2 cut(s) 179, 668
AdeI CACNNNGTG 1 cut(s) 460
AfaI GTAC 2 cut(s) 538, 683
AflIII ACRYGT 2 cut(s) 252, 289
AgsI TTSAA 2 cut(s) 511, 766
AjnI CCWGG 1 cut(s) 364
AluBI AGCT 8 cut(s) 125, 142, 160, 205, 279, 302, 466, 559
AluI AGCT 8 cut(s) 125, 142, 160, 205, 279, 302, 466, 559
Alw21I GWGCWC 1 cut(s) 618
Alw26I GTCTC 3 cut(s) 347, 505, 731
Alw44I GTGCAC 1 cut(s) 614
AlwI GGATC 3 cut(s) 270, 356, 522
AoxI GGCC 2 cut(s) 61, 308
ApaLI GTGCAC 1 cut(s) 614
ApeKI GCWGC 1 cut(s) 299
ApoI RAATTY 2 cut(s) 179, 668
Asp700I GAANNNNTTC 1 cut(s) 467
AspS9I GGNCC 3 cut(s) 62, 308, 740
AsuHPI GGTGA 1 cut(s) 689
AvaII GGWCC 1 cut(s) 740
BaeGI GKGCMC 1 cut(s) 618
BanII GRGCYC 1 cut(s) 374
Bbv12I GWGCWC 1 cut(s) 618
BbvI GCAGC 1 cut(s) 311
BccI CCATC 1 cut(s) 140
BceAI ACGGC 1 cut(s) 295
BciT130I CCWGG 1 cut(s) 366
BcoDI GTCTC 3 cut(s) 347, 505, 731
BfaI CTAG 1 cut(s) 531
BisI GCNGC 1 cut(s) 300
BlsI GCNGC 1 cut(s) 301
Bme1390I CCNGG 1 cut(s) 366
Bme18I GGWCC 1 cut(s) 740
BmgT120I GGNCC 3 cut(s) 62, 308, 740
BmiI GGNNCC 3 cut(s) 8, 64, 371
BmrFI CCNGG 1 cut(s) 366
BpuEI CTTGAG 2 cut(s) 185, 424
BsaI GGTCTC 1 cut(s) 505
BsaJI CCNNGG 1 cut(s) 365
BseBI CCWGG 1 cut(s) 366
BseDI CCNNGG 1 cut(s) 365
BseGI GGATG 1 cut(s) 395
BseSI GKGCMC 1 cut(s) 618
BseXI GCAGC 1 cut(s) 311
Bsh1285I CGRYCG 1 cut(s) 437
BshFI GGCC 2 cut(s) 63, 310
BsiEI CGRYCG 1 cut(s) 437
BsiHKAI GWGCWC 1 cut(s) 618
BsiSI CCGG 1 cut(s) 10
BslFI GGGAC 1 cut(s) 689
BsmAI GTCTC 3 cut(s) 347, 505, 731
BsmBI CGTCTC 2 cut(s) 347, 731
BsmFI GGGAC 1 cut(s) 689
BsmI GAATGC 1 cut(s) 455
BsnI GGCC 2 cut(s) 63, 310
Bso31I GGTCTC 1 cut(s) 505
Bsp1286I GDGCHC 2 cut(s) 374, 618
Bsp1407I TGTACA 1 cut(s) 681
Bsp143I GATC 4 cut(s) 262, 361, 407, 514
BspACI CCGC 4 cut(s) 56, 375, 399, 653
BspANI GGCC 2 cut(s) 63, 310
BspLI GGNNCC 3 cut(s) 8, 64, 371
BspPI GGATC 3 cut(s) 270, 356, 522
BspTNI GGTCTC 1 cut(s) 505
BsrGI TGTACA 1 cut(s) 681
BssECI CCNNGG 1 cut(s) 365
BssMI GATC 4 cut(s) 262, 361, 407, 514
Bst2UI CCWGG 1 cut(s) 366
Bst4CI ACNGT 3 cut(s) 150, 591, 642
Bst6I CTCTTC 1 cut(s) 214
BstAUI TGTACA 1 cut(s) 681
BstDEI CTNAG 1 cut(s) 422
BstF5I GGATG 1 cut(s) 395
BstKTI GATC 4 cut(s) 265, 364, 410, 517
BstMAI GTCTC 3 cut(s) 347, 505, 731
BstMBI GATC 4 cut(s) 262, 361, 407, 514
BstMCI CGRYCG 1 cut(s) 437
BstMWI GCNNNNNNNGC 1 cut(s) 613
BstNI CCWGG 1 cut(s) 366
BstNSI RCATGY 1 cut(s) 256
BstSCI CCNGG 1 cut(s) 364
BstSLI GKGCMC 1 cut(s) 618
BstV1I GCAGC 1 cut(s) 311
BsuRI GGCC 2 cut(s) 63, 310
BtgZI GCGATG 1 cut(s) 511
BtsCI GGATG 1 cut(s) 395
BtsI GCAGTG 1 cut(s) 465
BtsIMutI CAGTG 4 cut(s) 231, 465, 638, 667
Cfr13I GGNCC 3 cut(s) 62, 308, 740
CseI GACGC 3 cut(s) 329, 655, 713
Csp6I GTAC 2 cut(s) 537, 682
CviAII CATG 3 cut(s) 89, 253, 315
CviQI GTAC 2 cut(s) 537, 682
DdeI CTNAG 1 cut(s) 422
DpnI GATC 4 cut(s) 264, 363, 409, 516
DpnII GATC 4 cut(s) 262, 361, 407, 514
DraIII CACNNNGTG 1 cut(s) 460
DrdI GACNNNNNNGTC 1 cut(s) 497
DseDI GACNNNNNNGTC 1 cut(s) 497
Eam1104I CTCTTC 1 cut(s) 214
EarI CTCTTC 1 cut(s) 214
EciI GGCGGA 1 cut(s) 388
Eco24I GRGCYC 1 cut(s) 374
Eco31I GGTCTC 1 cut(s) 505
Eco47I GGWCC 1 cut(s) 740
EcoRII CCWGG 1 cut(s) 364
EcoT38I GRGCYC 1 cut(s) 374
Esp3I CGTCTC 2 cut(s) 347, 731
FaeI CATG 3 cut(s) 92, 256, 318
FaiI YATR 7 cut(s) 90, 254, 316, 331, 480, 482, 738
FalI AAGNNNNNCTT 4 cut(s) 329, 361, 677, 709
FaqI GGGAC 1 cut(s) 689
FatI CATG 3 cut(s) 88, 252, 314
FauI CCCGC 2 cut(s) 63, 382
FauNDI CATATG 1 cut(s) 480
FblI GTMKAC 1 cut(s) 257
Fnu4HI GCNGC 1 cut(s) 300
FokI GGATG 1 cut(s) 382
FriOI GRGCYC 1 cut(s) 374
Fsp4HI GCNGC 1 cut(s) 300
FspBI CTAG 1 cut(s) 531
GluI GCNGC 1 cut(s) 300
HaeIII GGCC 2 cut(s) 63, 310
HapII CCGG 1 cut(s) 10
HgaI GACGC 3 cut(s) 329, 655, 713
Hin1II CATG 3 cut(s) 92, 256, 318
HincII GTYRAC 3 cut(s) 490, 523, 645
HindII GTYRAC 3 cut(s) 490, 523, 645
HindIII AAGCTT 1 cut(s) 277
HinfI GANTC 2 cut(s) 224, 716
HpaI GTTAAC 1 cut(s) 523
HpaII CCGG 1 cut(s) 10
HphI GGTGA 1 cut(s) 689
Hpy166II GTNNAC 7 cut(s) 250, 258, 490, 523, 539, 616, 645
Hpy188I TCNGA 1 cut(s) 754
Hpy188III TCNNGA 4 cut(s) 34, 215, 266, 472
Hpy8I GTNNAC 7 cut(s) 250, 258, 490, 523, 539, 616, 645
Hpy99I CGWCG 1 cut(s) 154
HpyAV CCTTC 4 cut(s) 313, 344, 478, 505
HpyCH4III ACNGT 3 cut(s) 150, 591, 642
HpyCH4IV ACGT 1 cut(s) 289
HpyCH4V TGCA 1 cut(s) 616
HpyF10VI GCNNNNNNNGC 1 cut(s) 613
HpyF3I CTNAG 1 cut(s) 422
HpySE526I ACGT 1 cut(s) 289
Hsp92II CATG 3 cut(s) 92, 256, 318
KspAI GTTAAC 1 cut(s) 523
Kzo9I GATC 4 cut(s) 262, 361, 407, 514
LmnI GCTCC 2 cut(s) 6, 369
LpnPI CCDG 7 cut(s) 23, 351, 378, 482, 532, 633, 713
Lsp1109I GCAGC 1 cut(s) 311
MaeI CTAG 1 cut(s) 531
MaeII ACGT 1 cut(s) 289
MaeIII GTNAC 1 cut(s) 585
MalI GATC 4 cut(s) 264, 363, 409, 516
MboI GATC 4 cut(s) 262, 361, 407, 514
MboII GAAGA 3 cut(s) 49, 52, 201
MhlI GDGCHC 2 cut(s) 374, 618
MluCI AATT 4 cut(s) 179, 218, 561, 668
MlyI GAGTC 2 cut(s) 218, 725
MnlI CCTC 4 cut(s) 182, 239, 316, 565
MroXI GAANNNNTTC 1 cut(s) 467
MseI TTAA 3 cut(s) 81, 522, 746
MslI CAYNNNNRTG 1 cut(s) 621
MspI CCGG 1 cut(s) 10
MspR9I CCNGG 1 cut(s) 366
Mva1269I GAATGC 1 cut(s) 455
MvaI CCWGG 1 cut(s) 366
MwoI GCNNNNNNNGC 1 cut(s) 613
NdeI CATATG 1 cut(s) 480
NdeII GATC 4 cut(s) 262, 361, 407, 514
NlaIII CATG 3 cut(s) 92, 256, 318
NlaIV GGNNCC 3 cut(s) 8, 64, 371
NmuCI GTSAC 1 cut(s) 585
NspI RCATGY 1 cut(s) 256
PciI ACATGT 1 cut(s) 252
PctI GAATGC 1 cut(s) 455
PdmI GAANNNNTTC 1 cut(s) 467
PkrI GCNGC 1 cut(s) 301
PleI GAGTC 2 cut(s) 218, 724
PpsI GAGTC 2 cut(s) 218, 724
PscI ACATGT 1 cut(s) 252
Psp6I CCWGG 1 cut(s) 364
PspGI CCWGG 1 cut(s) 364
PspN4I GGNNCC 3 cut(s) 8, 64, 371
PspPI GGNCC 3 cut(s) 62, 308, 740
RsaI GTAC 2 cut(s) 538, 683
RsaNI GTAC 2 cut(s) 537, 682
RseI CAYNNNNRTG 1 cut(s) 621
SaqAI TTAA 3 cut(s) 81, 522, 746
SatI GCNGC 1 cut(s) 300
Sau3AI GATC 4 cut(s) 262, 361, 407, 514
Sau96I GGNCC 3 cut(s) 62, 308, 740
SchI GAGTC 2 cut(s) 218, 725
ScrFI CCNGG 1 cut(s) 366
SduI GDGCHC 2 cut(s) 374, 618
SinI GGWCC 1 cut(s) 740
SmiMI CAYNNNNRTG 1 cut(s) 621
SmlI CTYRAG 2 cut(s) 200, 403
SmoI CTYRAG 2 cut(s) 200, 403
Sse9I AATT 4 cut(s) 179, 218, 561, 668
SsiI CCGC 4 cut(s) 56, 375, 399, 653
SspMI CTAG 1 cut(s) 531
StyD4I CCNGG 1 cut(s) 364
TaaI ACNGT 3 cut(s) 150, 591, 642
TaiI ACGT 1 cut(s) 292
TaqI TCGA 7 cut(s) 120, 135, 174, 216, 273, 360, 473
TaqII GACCGA 1 cut(s) 423
TasI AATT 4 cut(s) 179, 218, 561, 668
TatI WGTACW 1 cut(s) 681
Tru1I TTAA 3 cut(s) 81, 522, 746
Tru9I TTAA 3 cut(s) 81, 522, 746
TscAI CASTG 4 cut(s) 238, 465, 645, 667
TseFI GTSAC 1 cut(s) 585
TseI GCWGC 1 cut(s) 299
Tsp45I GTSAC 1 cut(s) 585
TspDTI ATGAA 2 cut(s) 497, 681
TspGWI ACGGA 1 cut(s) 275
TspRI CASTG 4 cut(s) 238, 465, 645, 667
VneI GTGCAC 1 cut(s) 614
VpaK11BI GGWCC 1 cut(s) 740
XapI RAATTY 2 cut(s) 179, 668
XceI RCATGY 1 cut(s) 256
XmiI GTMKAC 1 cut(s) 257
XmnI GAANNNNTTC 1 cut(s) 467
XspI CTAG 1 cut(s) 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.