Rroxscaffold_7G00195060

U3-containing 90S pre-ribosomal complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0012458
Physical Location & Seq
Reverse (-)
37250076 .. 37254387
4312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00195060.1

Sequence Viewer

Length: 453 bp
ATGAGGAACGGAAGGTTCTTGACTCTCGGAATACGTGAAGAAGAGCATCAAAATTCAGCCGACTCCCACTTCGCCAACAACAACAAGAACAAGAAGAAGAAGAAGCAGCAGCAGCCCAACAACAATACCCAAAATGAAAACCAAATCGGAACTCAAAACAGCGAAGACGACAACAACAACAACAAGCTACAACCGGCATCGCCGTCGGCACAACTCAACTCGTTCCTTGACAAGTTTCAATCCGCCAATCGCCTCCAGCTTTCTTCTCTCGAATTGGACTCCCTCGATGATAAATGTATTGTGGACCTGTACGGAAGCACGGATCCGGATGTCGAAAACTTGGGGAAACATGTGAAGGCGACTTTTGGTCCATCATGGAAAGCCGAACTATGTGATAAGCGTCTCTTGGAAGGAAAAGTTGATCCGGGGAGTCCAGCGAGTTCTTATTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CMS1

Protein Analysis

150

Amino Acids

16.82

Weight (kDa)

5.91

Isoelectric Point (pI)

43.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012458)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43110 AT2G43110
fragaria_vesca FvH4_4g11840 FvH4_6g25320
malus_domestica MD04G1034000.v1.1 MD13G1276400.v1.1
prunus_persica Prupe.1G180600_v2.0.a1
pyrus_communis pycom04g02840
rosa_chinensis RchiOBHm_Chr4g0409281
rosa_laevigata RLG00000008581
rosa_multiflora Rmu_sc0002377.1_g000010
rosa_roxburghii Rroxscaffold_5G00353750 Rroxscaffold_7G00195060
rosa_rugosa Rorug04G0092000
rosa_samantha Rh4AG155000 Rh4BG152700 Rh4CG164000 Rh4DG148100
rosa_wichuraiana Rw4G012660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 325
AciI CCGC 1 cut(s) 243
AclWI GGATC 3 cut(s) 317, 330, 416
AcsI RAATTY 1 cut(s) 52
AfaI GTAC 1 cut(s) 311
AflIII ACRYGT 1 cut(s) 349
AgsI TTSAA 1 cut(s) 239
AhdI GACNNNNNGTC 1 cut(s) 366
AluBI AGCT 2 cut(s) 187, 259
AluI AGCT 2 cut(s) 187, 259
Alw26I GTCTC 1 cut(s) 407
AlwI GGATC 3 cut(s) 317, 330, 416
Aor13HI TCCGGA 1 cut(s) 325
ApeKI GCWGC 3 cut(s) 106, 109, 112
ApoI RAATTY 1 cut(s) 52
ArsI GACNNNNNNTTYG 2 cut(s) 53, 85
AspS9I GGNCC 2 cut(s) 304, 368
AsuC2I CCSGG 1 cut(s) 426
AvaII GGWCC 2 cut(s) 304, 368
BamHI GGATCC 1 cut(s) 322
BbsI GAAGAC 1 cut(s) 171
BbvI GCAGC 3 cut(s) 118, 121, 124
BccI CCATC 1 cut(s) 379
BceAI ACGGC 1 cut(s) 187
BcgI CGANNNNNNTGC 2 cut(s) 186, 220
BcnI CCSGG 1 cut(s) 426
BcoDI GTCTC 1 cut(s) 407
BisI GCNGC 3 cut(s) 107, 110, 113
BlsI GCNGC 3 cut(s) 108, 111, 114
Bme1390I CCNGG 1 cut(s) 426
Bme18I GGWCC 2 cut(s) 304, 368
BmeRI GACNNNNNGTC 1 cut(s) 366
BmgT120I GGNCC 2 cut(s) 304, 368
BmiI GGNNCC 1 cut(s) 324
BmrFI CCNGG 1 cut(s) 426
BmsI GCATC 2 cut(s) 55, 206
BpiI GAAGAC 1 cut(s) 171
BpmI CTGGAG 1 cut(s) 239
BpuMI CCSGG 1 cut(s) 426
BsaAI YACGTR 1 cut(s) 35
BsaJI CCNNGG 1 cut(s) 425
BsaWI WCCGGW 1 cut(s) 325
Bse118I RCCGGY 1 cut(s) 193
BseAI TCCGGA 1 cut(s) 325
BseDI CCNNGG 1 cut(s) 425
BseGI GGATG 1 cut(s) 334
BseXI GCAGC 3 cut(s) 118, 121, 124
BsiSI CCGG 3 cut(s) 194, 326, 425
BsmAI GTCTC 1 cut(s) 407
BsmBI CGTCTC 1 cut(s) 407
Bsp13I TCCGGA 1 cut(s) 325
Bsp143I GATC 2 cut(s) 322, 421
BspACI CCGC 1 cut(s) 243
BspEI TCCGGA 1 cut(s) 325
BspLI GGNNCC 1 cut(s) 324
BspPI GGATC 3 cut(s) 317, 330, 416
BspQI GCTCTTC 1 cut(s) 36
BsrFI RCCGGY 1 cut(s) 193
BssAI RCCGGY 1 cut(s) 193
BssECI CCNNGG 1 cut(s) 425
BssMI GATC 2 cut(s) 322, 421
Bst6I CTCTTC 1 cut(s) 36
BstBAI YACGTR 1 cut(s) 35
BstF5I GGATG 1 cut(s) 334
BstKTI GATC 2 cut(s) 325, 424
BstMAI GTCTC 1 cut(s) 407
BstMBI GATC 2 cut(s) 322, 421
BstMWI GCNNNNNNNGC 1 cut(s) 112
BstNSI RCATGY 1 cut(s) 353
BstSCI CCNGG 1 cut(s) 424
BstV1I GCAGC 3 cut(s) 118, 121, 124
BstV2I GAAGAC 1 cut(s) 171
BstX2I RGATCY 1 cut(s) 322
BstYI RGATCY 1 cut(s) 322
BtgZI GCGATG 1 cut(s) 183
BtsCI GGATG 1 cut(s) 334
Cfr10I RCCGGY 1 cut(s) 193
Cfr13I GGNCC 2 cut(s) 304, 368
CseI GACGC 1 cut(s) 389
Csp6I GTAC 1 cut(s) 310
CviAII CATG 2 cut(s) 350, 375
CviJI RGCY 5 cut(s) 59, 115, 187, 259, 383
CviKI_1 RGCY 5 cut(s) 59, 115, 187, 259, 383
CviQI GTAC 1 cut(s) 310
DpnI GATC 2 cut(s) 324, 423
DpnII GATC 2 cut(s) 322, 421
DriI GACNNNNNGTC 1 cut(s) 366
Eam1104I CTCTTC 1 cut(s) 36
Eam1105I GACNNNNNGTC 1 cut(s) 366
EarI CTCTTC 1 cut(s) 36
EciI GGCGGA 1 cut(s) 232
Eco47I GGWCC 2 cut(s) 304, 368
Esp3I CGTCTC 1 cut(s) 407
FaeI CATG 2 cut(s) 353, 378
FaiI YATR 3 cut(s) 351, 376, 391
FalI AAGNNNNNCTT 2 cut(s) 389, 421
FatI CATG 2 cut(s) 349, 374
Fnu4HI GCNGC 3 cut(s) 107, 110, 113
FokI GGATG 1 cut(s) 341
Fsp4HI GCNGC 3 cut(s) 107, 110, 113
GluI GCNGC 3 cut(s) 107, 110, 113
GsuI CTGGAG 1 cut(s) 239
HapII CCGG 3 cut(s) 194, 326, 425
HgaI GACGC 1 cut(s) 389
Hin1II CATG 2 cut(s) 353, 378
HinfI GANTC 4 cut(s) 22, 62, 278, 430
HpaII CCGG 3 cut(s) 194, 326, 425
Hpy166II GTNNAC 1 cut(s) 304
Hpy188I TCNGA 2 cut(s) 29, 149
Hpy188III TCNNGA 3 cut(s) 19, 269, 326
Hpy8I GTNNAC 1 cut(s) 304
Hpy99I CGWCG 1 cut(s) 208
HpyAV CCTTC 3 cut(s) 6, 349, 404
HpyCH4IV ACGT 1 cut(s) 34
HpyF10VI GCNNNNNNNGC 1 cut(s) 112
HpySE526I ACGT 1 cut(s) 34
Hsp92II CATG 2 cut(s) 353, 378
Kpn2I TCCGGA 1 cut(s) 325
Kzo9I GATC 2 cut(s) 322, 421
LguI GCTCTTC 1 cut(s) 36
LpnPI CCDG 6 cut(s) 207, 269, 320, 339, 438, 447
Lsp1109I GCAGC 3 cut(s) 118, 121, 124
LweI GCATC 2 cut(s) 55, 206
MaeII ACGT 1 cut(s) 34
MalI GATC 2 cut(s) 324, 423
MboI GATC 2 cut(s) 322, 421
MboII GAAGA 7 cut(s) 50, 53, 106, 109, 112, 176, 255
MflI RGATCY 1 cut(s) 322
MluCI AATT 2 cut(s) 52, 272
MlyI GAGTC 4 cut(s) 16, 56, 272, 439
MnlI CCTC 2 cut(s) 263, 293
MroI TCCGGA 1 cut(s) 325
MspI CCGG 3 cut(s) 194, 326, 425
MspR9I CCNGG 1 cut(s) 426
MwoI GCNNNNNNNGC 1 cut(s) 112
NciI CCSGG 1 cut(s) 426
NdeII GATC 2 cut(s) 322, 421
NlaIII CATG 2 cut(s) 353, 378
NlaIV GGNNCC 1 cut(s) 324
NspI RCATGY 1 cut(s) 353
PciI ACATGT 1 cut(s) 349
PciSI GCTCTTC 1 cut(s) 36
PkrI GCNGC 3 cut(s) 108, 111, 114
PleI GAGTC 4 cut(s) 16, 56, 272, 438
PpsI GAGTC 4 cut(s) 16, 56, 272, 438
Ppu21I YACGTR 1 cut(s) 35
PscI ACATGT 1 cut(s) 349
PspN4I GGNNCC 1 cut(s) 324
PspPI GGNCC 2 cut(s) 304, 368
PsuI RGATCY 1 cut(s) 322
RsaI GTAC 1 cut(s) 311
RsaNI GTAC 1 cut(s) 310
SapI GCTCTTC 1 cut(s) 36
SatI GCNGC 3 cut(s) 107, 110, 113
Sau3AI GATC 2 cut(s) 322, 421
Sau96I GGNCC 2 cut(s) 304, 368
SchI GAGTC 4 cut(s) 16, 56, 272, 439
ScrFI CCNGG 1 cut(s) 426
SetI ASST 5 cut(s) 17, 37, 189, 261, 309
SfaNI GCATC 2 cut(s) 55, 206
SinI GGWCC 2 cut(s) 304, 368
Sse9I AATT 2 cut(s) 52, 272
SsiI CCGC 1 cut(s) 243
StyD4I CCNGG 1 cut(s) 424
TaiI ACGT 1 cut(s) 37
TaqI TCGA 3 cut(s) 270, 285, 333
TasI AATT 2 cut(s) 52, 272
TseI GCWGC 3 cut(s) 106, 109, 112
TspDTI ATGAA 1 cut(s) 150
TspGWI ACGGA 3 cut(s) 24, 327, 335
VpaK11BI GGWCC 2 cut(s) 304, 368
XapI RAATTY 1 cut(s) 52
XceI RCATGY 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.