Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002380

Physical Location & Seq

Genomic Coordinates Forward (+)

17960648 .. 17963769

Gene Structure 3122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G43210.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1596 bp

ATGGAAGCTCTGTCTTCTCTTACGTTCAAGGGTTCTCTTCCAGAAGCCATATTTGAAGCCAAAGGGAAGAAGAAGCTTTTTGTTGTCTACATTTCTGGAGAGGATGAAGAGTCGGATAAGTTGAACAGATTGACTTGGACTGATGCATCGGTGGCAGATTCGTTGTCGAAGTATTGTATTTTAGTGCATATCCAAGCTGGAAGTGTTGACGCCACAAACTTCTCTGCAATATACCCATATTCATCTGTTCCTTGTATAGCTGCCATTGGATTCAGTGGTACACAAGTTTGGAGAACCGAAGGATTTATCACTGCTGAAGACCTTGCATCCAGTTTAGAGAAAGCGTGGTTAGGACTTCATATCCAGGAAACAACTGCAAGTATCTTTTCAGCAGCACTTGCATCACAGAACTCAGAGACACCTGTTTCTAGTGCTTCGAGTGTTGTCTTGCCTCCCGGAAGTGTTCCTTTAGATGCAGCGGTTGCATCTCCATCGACGGCTTCTAGTGTTCAACCCTCAGAGACAAAGTCAACGGTAACATCTGCATCAACAACAGAAAACAATGATGGCACAGTTGCAGTTAAGGGCAAAGAATCTGCTGAACCCAGTAATTTGTGTGATACTACTAAAAACCAGCCAGCACCCTCTGTTGATGGAACTAAGGCCAATGTTGAACATGAAGCGACAGAGACCCCTTTGCGTGTTCAGGCAGAAAAGGAGCCAATTCGTCCTACAGCCCCAGGAACAAATGATAATACATCCAGGGTTCGATCTTCTGTTGATAGAAAAAGGAAACAGGGAACTGTGATAAATGAAGAGGATAGTGGTGTAGGTGTTAGTGGAAGGGACATTAATCTAACAAAATCTGTCGATACAAAAGAGACCATGAAGCCAAAGGATGAAGGAGGAGAGGAAGAGGATGGAGAAAAATCCAAAAAAGCATCTGACGTTCATTTAAACATTCGATTACCTGATGGTAGTAGCCTTCAGGAGAAGTTTTCTGTGACAAGTATATTGAGAATGGTCAAGGATTATGTGAACAGTAATCAAACAATCGGACTGGGTGCTTATGATCTTGCGGTTCCTTACCCACGTAAGGTGTATACTGACCAAGATCTGGATAAGTCTCTATCCGAGTTGAGATTGTTCGATAGACAAGCACTTGTAGTAGTTCCGCGAAAAAGAGCAACCGTCTATCAAAGAGGAACATCTTACTCGGAGTCTAACAACAACACAGACCCTAATAGTGGCGGTTACTTTGCTTATGTTAGAAGAGTACTGTCTTATGCAAACCCGTTTTCATATTTTGGCGGTGGTACTGCCAACGCATCAAGCTCTGTTCCAGAACGTCAAACAAGACCAAATACGGAGGTGAGAAACAATCTGGGGCAAGTAGGGACGTCCTTTCAAGATCCATCAGAAGGTAGGAGCAACGTTAGGAATAGGAGACCAACCACTTCTCGGATTGGAAGTAACATCCATACGTTGAATCACAATGAAGATGAGGCTCCGTTTGGTGATGGAAACGCTTTTTGGAACGGAAACTCCACACAGTACGGTGGTGGAAGCGGTGGAGACAGTAATGATAGACGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0034976 GO:0036003 GO:0036503 GO:0042221 GO:0043161 GO:0043170 GO:0043618 GO:0043620 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1902680 GO:1903506 GO:1903508 GO:1990440 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBX

Protein Analysis

531

Amino Acids

57.1

Weight (kDa)

5.38

Isoelectric Point (pI)

43.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBX7_N	PF23187	8 - 89	6e-07	UBX7 N-terminal domain
UBX	PF00789	312 - 391	6.6e-23	UBX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43210 AT2G43210 AT2G43210
fragaria_vesca	FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270
malus_domestica	MD04G1038600.v1.1
prunus_persica	Prupe.1G189300_v2.0.a1 Prupe.1G189300_v2.0.a1 Prupe.1G189300_v2.0.a1 Prupe.1G189300_v2.0.a1 Prupe.1G189300_v2.0.a1 Prupe.1G189300_v2.0.a1 Prupe.1G189300_v2.0.a1
pyrus_communis	pycom04g03140
rosa_chinensis	RchiOBHm_Chr4g0407361
rosa_laevigata	RLG00000008730
rosa_multiflora	Rmu_sc0014661.1_g000002
rosa_roxburghii	Rroxscaffold_5G00351900
rosa_rugosa	Rorug04G0078800
rosa_samantha	Rh4AG143700 Rh4BG141500 Rh4CG150000 Rh4DG137600
rosa_wichuraiana	Rw4G011680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1403
AccB7I	CCANNNNNTGG	1 cut(s)	1117
AccI	GTMKAC	2 cut(s)	87, 1103
AccII	CGCG	1 cut(s)	1177
AciI	CCGC	6 cut(s)	479, 1079, 1175, 1251, 1311, 1569
AclI	AACGTT	1 cut(s)	1434
AclWI	GGATC	1 cut(s)	1406
AcuI	CTGAAG	2 cut(s)	336, 971
AcyI	GRCGYC	2 cut(s)	210, 1400
AfaI	GTAC	4 cut(s)	280, 1278, 1318, 1556
AfiI	CCNNNNNNNGG	5 cut(s)	1096, 1117, 1247, 1421, 1461
AgsI	TTSAA	7 cut(s)	28, 56, 124, 512, 674, 1409, 1489
AjnI	CCWGG	3 cut(s)	363, 739, 761
AjuI	GAANNNNNNNTTGG	2 cut(s)	1516, 1548
AloI	GAACNNNNNNTCC	2 cut(s)	1529, 1561
AluBI	AGCT	5 cut(s)	8, 76, 197, 260, 1335
AluI	AGCT	5 cut(s)	8, 76, 197, 260, 1335
Alw26I	GTCTC	7 cut(s)	410, 515, 683, 875, 1131, 1441, 1569
AlwI	GGATC	1 cut(s)	1406
AoxI	GGCC	1 cut(s)	663
ApeKI	GCWGC	3 cut(s)	260, 392, 476
AseI	ATTAAT	1 cut(s)	852
AsuC2I	CCSGG	1 cut(s)	456
AsuHPI	GGTGA	2 cut(s)	1384, 1529
BaeI	ACNNNNGTAYC	2 cut(s)	270, 303
BbsI	GAAGAC	2 cut(s)	6, 324
BbvI	GCAGC	3 cut(s)	247, 404, 488
BccI	CCATC	7 cut(s)	499, 560, 647, 914, 968, 1423, 1514
BceAI	ACGGC	1 cut(s)	513
BcgI	CGANNNNNNTGC	2 cut(s)	474, 508
BciT130I	CCWGG	3 cut(s)	365, 741, 763
BcnI	CCSGG	1 cut(s)	456
BcoDI	GTCTC	7 cut(s)	410, 515, 683, 875, 1131, 1441, 1569
BfaI	CTAG	2 cut(s)	429, 504
BfmI	CTRYAG	1 cut(s)	732
BglII	AGATCT	1 cut(s)	1114
BisI	GCNGC	3 cut(s)	261, 393, 477
BlsI	GCNGC	3 cut(s)	262, 394, 478
BmcAI	AGTACT	1 cut(s)	1278
Bme1390I	CCNGG	4 cut(s)	365, 456, 741, 763
BmiI	GGNNCC	3 cut(s)	720, 1083, 1509
BmrFI	CCNGG	4 cut(s)	365, 456, 741, 763
BmrI	ACTGGG	2 cut(s)	600, 1070
BmsI	GCATC	9 cut(s)	133, 155, 335, 410, 463, 494, 554, 950, 1337
BmuI	ACTGGG	2 cut(s)	600, 1070
BpiI	GAAGAC	2 cut(s)	6, 324
BpmI	CTGGAG	1 cut(s)	117
BpuMI	CCSGG	1 cut(s)	456
BsaAI	YACGTR	1 cut(s)	1094
BsaHI	GRCGYC	2 cut(s)	210, 1400
BsaI	GGTCTC	3 cut(s)	683, 875, 1441
BsaJI	CCNNGG	2 cut(s)	739, 762
BsaXI	ACNNNNNCTCC	2 cut(s)	1529, 1559
Bsc4I	CCNNNNNNNGG	5 cut(s)	1096, 1117, 1247, 1421, 1461
Bse1I	ACTGG	3 cut(s)	330, 606, 1065
BseBI	CCWGG	3 cut(s)	365, 741, 763
BseDI	CCNNGG	2 cut(s)	739, 762
BseGI	GGATG	6 cut(s)	109, 326, 758, 904, 925, 1476
BseLI	CCNNNNNNNGG	5 cut(s)	1096, 1117, 1247, 1421, 1461
BseMII	CTCAG	2 cut(s)	426, 531
BseNI	ACTGG	3 cut(s)	330, 606, 1065
BseRI	GAGGAG	1 cut(s)	921
BseXI	GCAGC	3 cut(s)	247, 404, 488
Bsh1236I	CGCG	1 cut(s)	1177
BshFI	GGCC	1 cut(s)	665
BsiSI	CCGG	1 cut(s)	456
BslFI	GGGAC	2 cut(s)	860, 1411
BslI	CCNNNNNNNGG	5 cut(s)	1096, 1117, 1247, 1421, 1461
BsmAI	GTCTC	7 cut(s)	410, 515, 683, 875, 1131, 1441, 1569
BsmFI	GGGAC	2 cut(s)	860, 1411
BsnI	GGCC	1 cut(s)	665
Bso31I	GGTCTC	3 cut(s)	683, 875, 1441
Bsp143I	GATC	4 cut(s)	770, 1072, 1114, 1411
BspACI	CCGC	6 cut(s)	479, 1079, 1175, 1251, 1311, 1569
BspANI	GGCC	1 cut(s)	665
BspCNI	CTCAG	2 cut(s)	425, 530
BspFNI	CGCG	1 cut(s)	1177
BspLI	GGNNCC	3 cut(s)	720, 1083, 1509
BspPI	GGATC	1 cut(s)	1406
BspTNI	GGTCTC	3 cut(s)	683, 875, 1441
BsrI	ACTGG	3 cut(s)	330, 606, 1065
BssECI	CCNNGG	2 cut(s)	739, 762
BssMI	GATC	4 cut(s)	770, 1072, 1114, 1411
BssNAI	GTATAC	1 cut(s)	1104
BssNI	GRCGYC	2 cut(s)	210, 1400
Bst1107I	GTATAC	1 cut(s)	1104
Bst2UI	CCWGG	3 cut(s)	365, 741, 763
Bst4CI	ACNGT	9 cut(s)	535, 574, 805, 1043, 1192, 1281, 1554, 1559, 1580
Bst6I	CTCTTC	5 cut(s)	42, 102, 810, 909, 1267
BstACI	GRCGYC	2 cut(s)	210, 1400
BstAPI	GCANNNNNTGC	2 cut(s)	398, 482
BstBAI	YACGTR	1 cut(s)	1094
BstC8I	GCNNGC	1 cut(s)	639
BstDEI	CTNAG	3 cut(s)	412, 517, 660
BstF5I	GGATG	6 cut(s)	109, 326, 758, 904, 925, 1476
BstFNI	CGCG	1 cut(s)	1177
BstKTI	GATC	4 cut(s)	773, 1075, 1117, 1414
BstMAI	GTCTC	7 cut(s)	410, 515, 683, 875, 1131, 1441, 1569
BstMBI	GATC	4 cut(s)	770, 1072, 1114, 1411
BstMWI	GCNNNNNNNGC	3 cut(s)	152, 398, 482
BstNI	CCWGG	3 cut(s)	365, 741, 763
BstSCI	CCNGG	4 cut(s)	363, 454, 739, 761
BstSFI	CTRYAG	1 cut(s)	732
BstUI	CGCG	1 cut(s)	1177
BstV1I	GCAGC	3 cut(s)	247, 404, 488
BstV2I	GAAGAC	2 cut(s)	6, 324
BstX2I	RGATCY	2 cut(s)	1114, 1411
BstYI	RGATCY	2 cut(s)	1114, 1411
BstZ17I	GTATAC	1 cut(s)	1104
BsuRI	GGCC	1 cut(s)	665
BtsCI	GGATG	6 cut(s)	109, 326, 758, 904, 925, 1476
BtsI	GCAGTG	1 cut(s)	309
BtsIMutI	CAGTG	2 cut(s)	280, 309
Cac8I	GCNNGC	1 cut(s)	639
CseI	GACGC	1 cut(s)	218
Csp6I	GTAC	4 cut(s)	279, 1277, 1317, 1555
CviAII	CATG	2 cut(s)	677, 886
CviQI	GTAC	4 cut(s)	279, 1277, 1317, 1555
DdeI	CTNAG	3 cut(s)	412, 517, 660
DpnI	GATC	4 cut(s)	772, 1074, 1116, 1413
DpnII	GATC	4 cut(s)	770, 1072, 1114, 1411
DraI	TTTAAA	1 cut(s)	957
Eam1104I	CTCTTC	5 cut(s)	42, 102, 810, 909, 1267
EarI	CTCTTC	5 cut(s)	42, 102, 810, 909, 1267
Eco31I	GGTCTC	3 cut(s)	683, 875, 1441
Eco57I	CTGAAG	2 cut(s)	336, 971
EcoRII	CCWGG	3 cut(s)	363, 739, 761
EcoT22I	ATGCAT	1 cut(s)	148
FaeI	CATG	2 cut(s)	680, 889
FalI	AAGNNNNNCTT	2 cut(s)	451, 483
FaqI	GGGAC	2 cut(s)	860, 1411
FatI	CATG	2 cut(s)	676, 885
FblI	GTMKAC	2 cut(s)	87, 1103
Fnu4HI	GCNGC	3 cut(s)	261, 393, 477
FokI	GGATG	6 cut(s)	116, 313, 745, 911, 932, 1463
Fsp4HI	GCNGC	3 cut(s)	261, 393, 477
FspBI	CTAG	2 cut(s)	429, 504
GluI	GCNGC	3 cut(s)	261, 393, 477
GsuI	CTGGAG	1 cut(s)	117
HaeIII	GGCC	1 cut(s)	665
HapII	CCGG	1 cut(s)	456
HgaI	GACGC	1 cut(s)	218
Hin1I	GRCGYC	2 cut(s)	210, 1400
Hin1II	CATG	2 cut(s)	680, 889
HincII	GTYRAC	2 cut(s)	208, 531
HindII	GTYRAC	2 cut(s)	208, 531
HindIII	AAGCTT	1 cut(s)	74
HinfI	GANTC	6 cut(s)	110, 158, 270, 593, 1220, 1489
HpaII	CCGG	1 cut(s)	456
HphI	GGTGA	2 cut(s)	1384, 1529
Hpy166II	GTNNAC	6 cut(s)	88, 208, 281, 531, 1039, 1104
Hpy188I	TCNGA	9 cut(s)	115, 415, 520, 946, 1058, 1135, 1219, 1420, 1464
Hpy188III	TCNNGA	6 cut(s)	41, 96, 989, 1118, 1343, 1409
Hpy8I	GTNNAC	6 cut(s)	88, 208, 281, 531, 1039, 1104
Hpy99I	CGWCG	1 cut(s)	499
HpyAV	CCTTC	5 cut(s)	293, 837, 896, 995, 1415
HpyCH4III	ACNGT	9 cut(s)	535, 574, 805, 1043, 1192, 1281, 1554, 1559, 1580
HpyCH4IV	ACGT	7 cut(s)	23, 948, 1093, 1348, 1400, 1434, 1484
HpyF10VI	GCNNNNNNNGC	3 cut(s)	152, 398, 482
HpyF3I	CTNAG	3 cut(s)	412, 517, 660
HpySE526I	ACGT	7 cut(s)	23, 948, 1093, 1348, 1400, 1434, 1484
Hsp92I	GRCGYC	2 cut(s)	210, 1400
Hsp92II	CATG	2 cut(s)	680, 889
Kzo9I	GATC	4 cut(s)	770, 1072, 1114, 1411
LmnI	GCTCC	3 cut(s)	718, 1428, 1513
Lsp1109I	GCAGC	3 cut(s)	247, 404, 488
LweI	GCATC	9 cut(s)	133, 155, 335, 410, 463, 494, 554, 950, 1337
MaeI	CTAG	2 cut(s)	429, 504
MaeII	ACGT	7 cut(s)	23, 948, 1093, 1348, 1400, 1434, 1484
MaeIII	GTNAC	4 cut(s)	535, 1003, 1253, 1472
MalI	GATC	4 cut(s)	772, 1074, 1116, 1413
MboI	GATC	4 cut(s)	770, 1072, 1114, 1411
MflI	RGATCY	2 cut(s)	1114, 1411
MluCI	AATT	2 cut(s)	610, 723
MlyI	GAGTC	2 cut(s)	119, 1229
MmeI	TCCRAC	1 cut(s)	93
Mph1103I	ATGCAT	1 cut(s)	148
MseI	TTAA	3 cut(s)	582, 852, 956
MspA1I	CMGCKG	1 cut(s)	479
MspI	CCGG	1 cut(s)	456
MspR9I	CCNGG	4 cut(s)	365, 456, 741, 763
MvaI	CCWGG	3 cut(s)	365, 741, 763
MvnI	CGCG	1 cut(s)	1177
MwoI	GCNNNNNNNGC	3 cut(s)	152, 398, 482
NciI	CCSGG	1 cut(s)	456
NdeII	GATC	4 cut(s)	770, 1072, 1114, 1411
NlaIII	CATG	2 cut(s)	680, 889
NlaIV	GGNNCC	3 cut(s)	720, 1083, 1509
NmuCI	GTSAC	1 cut(s)	1003
NsiI	ATGCAT	1 cut(s)	148
PfeI	GAWTC	4 cut(s)	158, 270, 593, 1489
PflFI	GACNNNGTC	1 cut(s)	526
PflMI	CCANNNNNTGG	1 cut(s)	1117
PfoI	TCCNGGA	2 cut(s)	363, 454
PkrI	GCNGC	3 cut(s)	262, 394, 478
PleI	GAGTC	2 cut(s)	118, 1228
PpsI	GAGTC	2 cut(s)	118, 1228
Ppu21I	YACGTR	1 cut(s)	1094
PshBI	ATTAAT	1 cut(s)	852
Psp1406I	AACGTT	1 cut(s)	1434
Psp6I	CCWGG	3 cut(s)	363, 739, 761
PspGI	CCWGG	3 cut(s)	363, 739, 761
PspN4I	GGNNCC	3 cut(s)	720, 1083, 1509
PsuI	RGATCY	2 cut(s)	1114, 1411
PsyI	GACNNNGTC	1 cut(s)	526
RsaI	GTAC	4 cut(s)	280, 1278, 1318, 1556
RsaNI	GTAC	4 cut(s)	279, 1277, 1317, 1555
SaqAI	TTAA	3 cut(s)	582, 852, 956
SatI	GCNGC	3 cut(s)	261, 393, 477
Sau3AI	GATC	4 cut(s)	770, 1072, 1114, 1411
ScaI	AGTACT	1 cut(s)	1278
SchI	GAGTC	2 cut(s)	119, 1229
ScrFI	CCNGG	4 cut(s)	365, 456, 741, 763
SfaNI	GCATC	9 cut(s)	133, 155, 335, 410, 463, 494, 554, 950, 1337
SfcI	CTRYAG	1 cut(s)	732
Sse9I	AATT	2 cut(s)	610, 723
SsiI	CCGC	6 cut(s)	479, 1079, 1175, 1251, 1311, 1569
SspMI	CTAG	2 cut(s)	429, 504
StyD4I	CCNGG	4 cut(s)	363, 454, 739, 761
TaaI	ACNGT	9 cut(s)	535, 574, 805, 1043, 1192, 1281, 1554, 1559, 1580
TaiI	ACGT	7 cut(s)	26, 951, 1096, 1351, 1403, 1437, 1487
TaqI	TCGA	7 cut(s)	167, 437, 494, 769, 870, 964, 1149
TasI	AATT	2 cut(s)	610, 723
TatI	WGTACW	1 cut(s)	1276
TfiI	GAWTC	4 cut(s)	158, 270, 593, 1489
Tru1I	TTAA	3 cut(s)	582, 852, 956
Tru9I	TTAA	3 cut(s)	582, 852, 956
TscAI	CASTG	2 cut(s)	280, 316
TseFI	GTSAC	1 cut(s)	1003
TseI	GCWGC	3 cut(s)	260, 392, 476
Tsp45I	GTSAC	1 cut(s)	1003
TspGWI	ACGGA	3 cut(s)	1382, 1500, 1554
TspRI	CASTG	2 cut(s)	280, 316
Tth111I	GACNNNGTC	1 cut(s)	526
Van91I	CCANNNNNTGG	1 cut(s)	1117
VspI	ATTAAT	1 cut(s)	852
XmiI	GTMKAC	2 cut(s)	87, 1103
XspI	CTAG	2 cut(s)	429, 504
ZraI	GACGTC	1 cut(s)	1401
ZrmI	AGTACT	1 cut(s)	1278
Zsp2I	ATGCAT	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.