Prupe.1G189300_v2.0.a1

Ubx domain-containing

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
17447905 .. 17456638
8734 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G189300.2

Sequence Viewer

Length: 1620 bp
ATGGAACCATCTCTCACCTCTCTGACGTATAAGGGTTCCATACCTGAAGCAATCACTGAAGCAAAGAAGCAGAGGAAGCTCTTTGTTGTGTATATTTCAGGTAAAAATGATGAGTCTAGTCGCTTGGAAAATTCTACATGGACTGATGTAAATGTAGCGGACTCGGTAGCAAAGTACTGTCTTTTATTGCATATCCCTGAAGAAAGCACTGATGCTGCAAATTTTTCTGCAATATACCCACAGAAATCTATACCTTGTATTACAGCTATTGGATACAATGGTGTACAAATTTGGCAAAATGAGGGCTTTGTCAGTGCTGAAGTTCTGGCGTCCAGTTTAGAGAAGGCGTGGTTGGGTATTCATATCCAGGAAACAACTGCAACTGTGTTGAGTGCAGCTCTTGCTTCAAATAACTCTGAACCATCTACTTCTGGGGTTCCTAATACTGTCTCAACTGATGAAGGAAGTTCCTCAAGTACTAATCAAGGACGTTCCTCAAGTGCAGCTGTTCCATTGCCTTCAATAGACACAAATGATCAATCACCAGACGCTATAGATGCTGTCTCTGACACAGTGAAGAAAAATAAAGGTCGTGATTGCAGAGTTGAGGAGAAAAATAACGATTTAGGATACAAGACATCTTCGAAATCATTTGATGCTAATGGGTTAGAATGTGTCGGGGATGAACAGTCCAGCTCTCCCATGAAATCTGCCCAAGGAGTACAGGATATTGATATGGAGGACCTGAATAATTCTGGAGCTGATAATGTTTCTTCCATTGCTGAAGTTGGTTATAGTGGCCCCGAAAAGACCACTCTTAATCATTCAGGTGTCTCAGGAGAAGCTTCACAAGCATATAGTAGTGAAAAAAATGAAGCTCTGCAAGTTGAAAGGGGTGAAGTTAAGGATGATAAGAAGGTTGATGCATTTGAGAAGTGTACGGAGGTCAGCAAATCTAGTGATGTTCACTTGAATATCCGATTGCCCAATGGTGTCAGCCTGAAACAGAAGTTTTCTGTGACAAGTACTGTGAGAATGGTCAAAGACTATGTTGATGAAAACCAAGGAAGTGGTATTGGCACTTATGATCTAGCCATCCCCTATCCTCGCAAGGTATTCTCTAATCAAGAATTGAATGAATCGTTATCAGATTTGGGCCTGTTTGATAGACAAGCATTGATAGTTGTTCCACATCAGCAAGGGACTAGTTATCAGCGCGGGAGATCTGCATTCTCAGAGCAAATAGACTCCAGAAATACTGGTAGTTCCTCAAATGGAAGTAATGGGGGATATTTTTCGTATGTGAAAGGATTTCTATCTTACTTCAATCCTCTCTCTTATTTTGGTGGTGGTGCAAACTCATCAAGTTCAGGGCAGCAATCCCAAAATGGCATGTGGGAATATAGCCCAAATTCTGCACGTCAAAACAATTCCACTGAAAGCATTTCTACAAGTAGTAGAAATGAAGGGAAAAAAAACAGGCAACCACCAGCATCTGGTTTTGGAAGTAACATTCACACATTGAAACATGATGAAGATGATGAACGGTTCAGCGATAGAAATGCCTTCTGGAATGGTAATTCTACTCAGTATGGTGGTGGCAATGATGATGGCAAATAA

Protein Analysis

540

Amino Acids

58.07

Weight (kDa)

4.87

Isoelectric Point (pI)

38.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1496
AccII CGCG 1 cut(s) 1218
AciI CCGC 2 cut(s) 158, 1218
AcsI RAATTY 4 cut(s) 130, 220, 288, 1411
AcuI CTGAAG 5 cut(s) 66, 78, 219, 339, 804
AcyI GRCGYC 1 cut(s) 329
AfaI GTAC 6 cut(s) 176, 285, 478, 723, 940, 1027
AfiI CCNNNNNNNGG 1 cut(s) 1496
AgsI TTSAA 7 cut(s) 408, 522, 890, 973, 1135, 1327, 1525
AhlI ACTAGT 1 cut(s) 1205
AjiI CACGTC 1 cut(s) 1421
AjnI CCWGG 1 cut(s) 366
AjuI GAANNNNNNNTTGG 2 cut(s) 335, 367
AluBI AGCT 8 cut(s) 79, 266, 398, 506, 696, 761, 845, 878
AluI AGCT 8 cut(s) 79, 266, 398, 506, 696, 761, 845, 878
Alw26I GTCTC 3 cut(s) 454, 568, 838
AlwNI CAGNNNCTG 1 cut(s) 1496
AoxI GGCC 2 cut(s) 799, 1156
ApeKI GCWGC 4 cut(s) 215, 395, 503, 1375
ApoI RAATTY 4 cut(s) 130, 220, 288, 1411
AspLEI GCGC 1 cut(s) 1218
AspS9I GGNCC 3 cut(s) 742, 800, 1156
AsuHPI GGTGA 3 cut(s) 7, 534, 908
AsuII TTCGAA 1 cut(s) 644
AvaII GGWCC 1 cut(s) 742
BaeI ACNNNNGTAYC 2 cut(s) 265, 298
BbvI GCAGC 4 cut(s) 202, 407, 515, 1387
BccI CCATC 4 cut(s) 16, 430, 1103, 1604
BcgI CGANNNNNNTGC 2 cut(s) 1544, 1578
BciT130I CCWGG 1 cut(s) 368
BciVI GTATCC 2 cut(s) 266, 623
BclI TGATCA 1 cut(s) 535
BcoDI GTCTC 3 cut(s) 454, 568, 838
BcuI ACTAGT 1 cut(s) 1205
BfaI CTAG 4 cut(s) 117, 957, 1091, 1206
BfmI CTRYAG 1 cut(s) 552
BfuI GTATCC 2 cut(s) 266, 623
BglII AGATCT 1 cut(s) 1223
BisI GCNGC 4 cut(s) 216, 396, 504, 1376
BlsI GCNGC 4 cut(s) 217, 397, 505, 1377
BmcAI AGTACT 3 cut(s) 176, 478, 1027
Bme1390I CCNGG 1 cut(s) 368
Bme18I GGWCC 1 cut(s) 742
BmgBI CACGTC 1 cut(s) 1421
BmgT120I GGNCC 3 cut(s) 742, 800, 1156
BmiI GGNNCC 4 cut(s) 6, 37, 438, 802
BmrFI CCNGG 1 cut(s) 368
BmsI GCATC 5 cut(s) 202, 547, 646, 913, 1502
BplI GAGNNNNNCTC 2 cut(s) 382, 414
BpmI CTGGAG 2 cut(s) 777, 1234
Bpu14I TTCGAA 1 cut(s) 644
BpuEI CTTGAG 2 cut(s) 457, 481
BsaBI GATNNNNATC 1 cut(s) 1315
BsaHI GRCGYC 1 cut(s) 329
BsaJI CCNNGG 2 cut(s) 715, 1063
Bsc4I CCNNNNNNNGG 1 cut(s) 1496
Bse1I ACTGG 2 cut(s) 333, 1264
Bse3DI GCAATG 3 cut(s) 512, 777, 1609
Bse8I GATNNNNATC 1 cut(s) 1315
BseBI CCWGG 1 cut(s) 368
BseDI CCNNGG 2 cut(s) 715, 1063
BseGI GGATG 3 cut(s) 688, 913, 1095
BseJI GATNNNNATC 1 cut(s) 1315
BseLI CCNNNNNNNGG 1 cut(s) 1496
BseMI GCAATG 3 cut(s) 512, 777, 1609
BseMII CTCAG 3 cut(s) 849, 1248, 1601
BseNI ACTGG 2 cut(s) 333, 1264
BseRI GAGGAG 1 cut(s) 623
BseXI GCAGC 4 cut(s) 202, 407, 515, 1387
BsgI GTGCAG 3 cut(s) 414, 522, 1401
Bsh1236I CGCG 1 cut(s) 1218
BshFI GGCC 2 cut(s) 801, 1158
BslFI GGGAC 1 cut(s) 1216
BslI CCNNNNNNNGG 1 cut(s) 1496
BsmAI GTCTC 3 cut(s) 454, 568, 838
BsmFI GGGAC 1 cut(s) 1216
BsmI GAATGC 1 cut(s) 1229
BsnI GGCC 2 cut(s) 801, 1158
Bsp119I TTCGAA 1 cut(s) 644
Bsp1407I TGTACA 1 cut(s) 283
Bsp143I GATC 3 cut(s) 535, 1087, 1223
BspACI CCGC 2 cut(s) 158, 1218
BspANI GGCC 2 cut(s) 801, 1158
BspCNI CTCAG 3 cut(s) 848, 1247, 1600
BspFNI CGCG 1 cut(s) 1218
BspLI GGNNCC 4 cut(s) 6, 37, 438, 802
BspT104I TTCGAA 1 cut(s) 644
BsrDI GCAATG 3 cut(s) 512, 777, 1609
BsrGI TGTACA 1 cut(s) 283
BsrI ACTGG 2 cut(s) 333, 1264
BssECI CCNNGG 2 cut(s) 715, 1063
BssMI GATC 3 cut(s) 535, 1087, 1223
BssNI GRCGYC 1 cut(s) 329
BssT1I CCWWGG 2 cut(s) 715, 1063
Bst2UI CCWGG 1 cut(s) 368
Bst4CI ACNGT 7 cut(s) 179, 385, 448, 574, 690, 1030, 1548
BstACI GRCGYC 1 cut(s) 329
BstAPI GCANNNNNTGC 1 cut(s) 401
BstAUI TGTACA 1 cut(s) 283
BstBI TTCGAA 1 cut(s) 644
BstDEI CTNAG 3 cut(s) 835, 1234, 1587
BstF5I GGATG 3 cut(s) 688, 913, 1095
BstFNI CGCG 1 cut(s) 1218
BstHHI GCGC 1 cut(s) 1218
BstKTI GATC 3 cut(s) 538, 1090, 1226
BstMAI GTCTC 3 cut(s) 454, 568, 838
BstMBI GATC 3 cut(s) 535, 1087, 1223
BstMWI GCNNNNNNNGC 4 cut(s) 76, 401, 557, 851
BstNI CCWGG 1 cut(s) 368
BstNSI RCATGY 1 cut(s) 1396
BstSCI CCNGG 1 cut(s) 366
BstSFI CTRYAG 1 cut(s) 552
BstUI CGCG 1 cut(s) 1218
BstV1I GCAGC 4 cut(s) 202, 407, 515, 1387
BstX2I RGATCY 1 cut(s) 1223
BstXI CCANNNNNNTGG 1 cut(s) 1070
BstYI RGATCY 1 cut(s) 1223
BsuI GTATCC 2 cut(s) 266, 623
BsuRI GGCC 2 cut(s) 801, 1158
BtrI CACGTC 1 cut(s) 1421
BtsCI GGATG 3 cut(s) 688, 913, 1095
BtsIMutI CAGTG 5 cut(s) 54, 207, 319, 579, 1434
CaiI CAGNNNCTG 1 cut(s) 1496
CfoI GCGC 1 cut(s) 1218
Cfr13I GGNCC 3 cut(s) 742, 800, 1156
CseI GACGC 2 cut(s) 318, 557
Csp6I GTAC 6 cut(s) 175, 284, 477, 722, 939, 1026
CviAII CATG 4 cut(s) 138, 703, 1393, 1529
CviQI GTAC 6 cut(s) 175, 284, 477, 722, 939, 1026
DdeI CTNAG 3 cut(s) 835, 1234, 1587
DpnI GATC 3 cut(s) 537, 1089, 1225
DpnII GATC 3 cut(s) 535, 1087, 1223
Eco130I CCWWGG 2 cut(s) 715, 1063
Eco47I GGWCC 1 cut(s) 742
Eco57I CTGAAG 5 cut(s) 66, 78, 219, 339, 804
EcoO109I RGGNCCY 1 cut(s) 742
EcoRII CCWGG 1 cut(s) 366
EcoT14I CCWWGG 2 cut(s) 715, 1063
EcoT22I ATGCAT 1 cut(s) 928
ErhI CCWWGG 2 cut(s) 715, 1063
FaeI CATG 4 cut(s) 141, 706, 1396, 1532
FaqI GGGAC 1 cut(s) 1216
FatI CATG 4 cut(s) 137, 702, 1392, 1528
FauI CCCGC 1 cut(s) 1211
FbaI TGATCA 1 cut(s) 535
Fnu4HI GCNGC 4 cut(s) 216, 396, 504, 1376
FokI GGATG 3 cut(s) 695, 920, 1082
Fsp4HI GCNGC 4 cut(s) 216, 396, 504, 1376
FspBI CTAG 4 cut(s) 117, 957, 1091, 1206
GlaI GCGC 1 cut(s) 1217
GluI GCNGC 4 cut(s) 216, 396, 504, 1376
GsuI CTGGAG 2 cut(s) 777, 1234
HaeIII GGCC 2 cut(s) 801, 1158
HgaI GACGC 2 cut(s) 318, 557
HhaI GCGC 1 cut(s) 1218
Hin1I GRCGYC 1 cut(s) 329
Hin1II CATG 4 cut(s) 141, 706, 1396, 1532
Hin6I GCGC 1 cut(s) 1216
HinP1I GCGC 1 cut(s) 1216
HindIII AAGCTT 1 cut(s) 843
HinfI GANTC 4 cut(s) 113, 161, 1139, 1247
HphI GGTGA 3 cut(s) 7, 534, 908
Hpy166II GTNNAC 3 cut(s) 284, 939, 967
Hpy188I TCNGA 6 cut(s) 24, 418, 568, 980, 1150, 1237
Hpy188III TCNNGA 6 cut(s) 593, 756, 837, 1127, 1251, 1570
Hpy8I GTNNAC 3 cut(s) 284, 939, 967
HpyAV CCTTC 6 cut(s) 337, 455, 528, 910, 1460, 1576
HpyCH4III ACNGT 7 cut(s) 179, 385, 448, 574, 690, 1030, 1548
HpyCH4IV ACGT 3 cut(s) 26, 490, 1420
HpyF10VI GCNNNNNNNGC 4 cut(s) 76, 401, 557, 851
HpyF3I CTNAG 3 cut(s) 835, 1234, 1587
HpySE526I ACGT 3 cut(s) 26, 490, 1420
Hsp92I GRCGYC 1 cut(s) 329
Hsp92II CATG 4 cut(s) 141, 706, 1396, 1532
HspAI GCGC 1 cut(s) 1216
Ksp22I TGATCA 1 cut(s) 535
Kzo9I GATC 3 cut(s) 535, 1087, 1223
LmnI GCTCC 1 cut(s) 758
Lsp1109I GCAGC 4 cut(s) 202, 407, 515, 1387
LweI GCATC 5 cut(s) 202, 547, 646, 913, 1502
MaeI CTAG 4 cut(s) 117, 957, 1091, 1206
MaeII ACGT 3 cut(s) 26, 490, 1420
MaeIII GTNAC 2 cut(s) 1018, 1508
MalI GATC 3 cut(s) 537, 1089, 1225
MboI GATC 3 cut(s) 535, 1087, 1223
MboII GAAGA 5 cut(s) 212, 589, 633, 765, 1547
MflI RGATCY 1 cut(s) 1223
MluCI AATT 8 cut(s) 130, 220, 288, 751, 1130, 1411, 1429, 1579
MlyI GAGTC 3 cut(s) 122, 155, 1241
Mph1103I ATGCAT 1 cut(s) 928
MseI TTAA 2 cut(s) 819, 903
MslI CAYNNNNRTG 1 cut(s) 828
MspA1I CMGCKG 1 cut(s) 506
MspR9I CCNGG 1 cut(s) 368
Mva1269I GAATGC 1 cut(s) 1229
MvaI CCWGG 1 cut(s) 368
MvnI CGCG 1 cut(s) 1218
MwoI GCNNNNNNNGC 4 cut(s) 76, 401, 557, 851
NdeII GATC 3 cut(s) 535, 1087, 1223
NlaIII CATG 4 cut(s) 141, 706, 1396, 1532
NlaIV GGNNCC 4 cut(s) 6, 37, 438, 802
NmuCI GTSAC 1 cut(s) 1018
NsiI ATGCAT 1 cut(s) 928
NspI RCATGY 1 cut(s) 1396
NspV TTCGAA 1 cut(s) 644
PctI GAATGC 1 cut(s) 1229
PfeI GAWTC 1 cut(s) 1139
PflMI CCANNNNNTGG 1 cut(s) 1496
PfoI TCCNGGA 1 cut(s) 366
PkrI GCNGC 4 cut(s) 217, 397, 505, 1377
PleI GAGTC 3 cut(s) 121, 155, 1241
PpsI GAGTC 3 cut(s) 121, 155, 1241
PpuMI RGGWCCY 1 cut(s) 742
Psp5II RGGWCCY 1 cut(s) 742
Psp6I CCWGG 1 cut(s) 366
PspGI CCWGG 1 cut(s) 366
PspN4I GGNNCC 4 cut(s) 6, 37, 438, 802
PspPI GGNCC 3 cut(s) 742, 800, 1156
PspPPI RGGWCCY 1 cut(s) 742
PstNI CAGNNNCTG 1 cut(s) 1496
PsuI RGATCY 1 cut(s) 1223
PvuII CAGCTG 1 cut(s) 506
RsaI GTAC 6 cut(s) 176, 285, 478, 723, 940, 1027
RsaNI GTAC 6 cut(s) 175, 284, 477, 722, 939, 1026
RseI CAYNNNNRTG 1 cut(s) 828
SaqAI TTAA 2 cut(s) 819, 903
SatI GCNGC 4 cut(s) 216, 396, 504, 1376
Sau3AI GATC 3 cut(s) 535, 1087, 1223
Sau96I GGNCC 3 cut(s) 742, 800, 1156
ScaI AGTACT 3 cut(s) 176, 478, 1027
SchI GAGTC 3 cut(s) 122, 155, 1241
ScrFI CCNGG 1 cut(s) 368
SfaNI GCATC 5 cut(s) 202, 547, 646, 913, 1502
SfcI CTRYAG 1 cut(s) 552
SfuI TTCGAA 1 cut(s) 644
SinI GGWCC 1 cut(s) 742
SmiMI CAYNNNNRTG 1 cut(s) 828
SmlI CTYRAG 2 cut(s) 472, 496
SmoI CTYRAG 2 cut(s) 472, 496
SpeI ACTAGT 1 cut(s) 1205
Sse9I AATT 8 cut(s) 130, 220, 288, 751, 1130, 1411, 1429, 1579
SsiI CCGC 2 cut(s) 158, 1218
SspMI CTAG 4 cut(s) 117, 957, 1091, 1206
StyD4I CCNGG 1 cut(s) 366
StyI CCWWGG 2 cut(s) 715, 1063
TaaI ACNGT 7 cut(s) 179, 385, 448, 574, 690, 1030, 1548
TaiI ACGT 3 cut(s) 29, 493, 1423
TaqI TCGA 1 cut(s) 644
TasI AATT 8 cut(s) 130, 220, 288, 751, 1130, 1411, 1429, 1579
TatI WGTACW 5 cut(s) 174, 283, 476, 721, 1025
TfiI GAWTC 1 cut(s) 1139
Tru1I TTAA 2 cut(s) 819, 903
Tru9I TTAA 2 cut(s) 819, 903
TscAI CASTG 5 cut(s) 61, 214, 319, 579, 1441
TseFI GTSAC 1 cut(s) 1018
TseI GCWGC 4 cut(s) 215, 395, 503, 1375
Tsp45I GTSAC 1 cut(s) 1018
TspGWI ACGGA 1 cut(s) 956
TspRI CASTG 5 cut(s) 61, 214, 319, 579, 1441
Van91I CCANNNNNTGG 1 cut(s) 1496
VpaK11BI GGWCC 1 cut(s) 742
XapI RAATTY 4 cut(s) 130, 220, 288, 1411
XceI RCATGY 1 cut(s) 1396
XspI CTAG 4 cut(s) 117, 957, 1091, 1206
ZrmI AGTACT 3 cut(s) 176, 478, 1027
Zsp2I ATGCAT 1 cut(s) 928
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.