Ubx domain-containing
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G43210 AT2G43210 AT2G43210 |
| fragaria_vesca | FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 |
| malus_domestica | MD04G1038600.v1.1 |
| prunus_persica | Prupe.1G189300_v2.0.a1 Prupe.1G189300_v2.0.a1 Prupe.1G189300_v2.0.a1 Prupe.1G189300_v2.0.a1 Prupe.1G189300_v2.0.a1 Prupe.1G189300_v2.0.a1 Prupe.1G189300_v2.0.a1 |
| pyrus_communis | pycom04g03140 |
| rosa_chinensis | RchiOBHm_Chr4g0407361 |
| rosa_laevigata | RLG00000008730 |
| rosa_multiflora | Rmu_sc0014661.1_g000002 |
| rosa_roxburghii | Rroxscaffold_5G00351900 |
| rosa_rugosa | Rorug04G0078800 |
| rosa_samantha | Rh4AG143700 Rh4BG141500 Rh4CG150000 Rh4DG137600 |
| rosa_wichuraiana | Rw4G011680 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1496 |
| AccII | CGCG | 1 cut(s) | 1218 |
| AciI | CCGC | 2 cut(s) | 158, 1218 |
| AcsI | RAATTY | 4 cut(s) | 130, 220, 288, 1411 |
| AcuI | CTGAAG | 5 cut(s) | 66, 78, 219, 339, 804 |
| AcyI | GRCGYC | 1 cut(s) | 329 |
| AfaI | GTAC | 6 cut(s) | 176, 285, 478, 723, 940, 1027 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1496 |
| AgsI | TTSAA | 7 cut(s) | 408, 522, 890, 973, 1135, 1327, 1525 |
| AhlI | ACTAGT | 1 cut(s) | 1205 |
| AjiI | CACGTC | 1 cut(s) | 1421 |
| AjnI | CCWGG | 1 cut(s) | 366 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 335, 367 |
| AluBI | AGCT | 8 cut(s) | 79, 266, 398, 506, 696, 761, 845, 878 |
| AluI | AGCT | 8 cut(s) | 79, 266, 398, 506, 696, 761, 845, 878 |
| Alw26I | GTCTC | 3 cut(s) | 454, 568, 838 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1496 |
| AoxI | GGCC | 2 cut(s) | 799, 1156 |
| ApeKI | GCWGC | 4 cut(s) | 215, 395, 503, 1375 |
| ApoI | RAATTY | 4 cut(s) | 130, 220, 288, 1411 |
| AspLEI | GCGC | 1 cut(s) | 1218 |
| AspS9I | GGNCC | 3 cut(s) | 742, 800, 1156 |
| AsuHPI | GGTGA | 3 cut(s) | 7, 534, 908 |
| AsuII | TTCGAA | 1 cut(s) | 644 |
| AvaII | GGWCC | 1 cut(s) | 742 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 265, 298 |
| BbvI | GCAGC | 4 cut(s) | 202, 407, 515, 1387 |
| BccI | CCATC | 4 cut(s) | 16, 430, 1103, 1604 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1544, 1578 |
| BciT130I | CCWGG | 1 cut(s) | 368 |
| BciVI | GTATCC | 2 cut(s) | 266, 623 |
| BclI | TGATCA | 1 cut(s) | 535 |
| BcoDI | GTCTC | 3 cut(s) | 454, 568, 838 |
| BcuI | ACTAGT | 1 cut(s) | 1205 |
| BfaI | CTAG | 4 cut(s) | 117, 957, 1091, 1206 |
| BfmI | CTRYAG | 1 cut(s) | 552 |
| BfuI | GTATCC | 2 cut(s) | 266, 623 |
| BglII | AGATCT | 1 cut(s) | 1223 |
| BisI | GCNGC | 4 cut(s) | 216, 396, 504, 1376 |
| BlsI | GCNGC | 4 cut(s) | 217, 397, 505, 1377 |
| BmcAI | AGTACT | 3 cut(s) | 176, 478, 1027 |
| Bme1390I | CCNGG | 1 cut(s) | 368 |
| Bme18I | GGWCC | 1 cut(s) | 742 |
| BmgBI | CACGTC | 1 cut(s) | 1421 |
| BmgT120I | GGNCC | 3 cut(s) | 742, 800, 1156 |
| BmiI | GGNNCC | 4 cut(s) | 6, 37, 438, 802 |
| BmrFI | CCNGG | 1 cut(s) | 368 |
| BmsI | GCATC | 5 cut(s) | 202, 547, 646, 913, 1502 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 382, 414 |
| BpmI | CTGGAG | 2 cut(s) | 777, 1234 |
| Bpu14I | TTCGAA | 1 cut(s) | 644 |
| BpuEI | CTTGAG | 2 cut(s) | 457, 481 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1315 |
| BsaHI | GRCGYC | 1 cut(s) | 329 |
| BsaJI | CCNNGG | 2 cut(s) | 715, 1063 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1496 |
| Bse1I | ACTGG | 2 cut(s) | 333, 1264 |
| Bse3DI | GCAATG | 3 cut(s) | 512, 777, 1609 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1315 |
| BseBI | CCWGG | 1 cut(s) | 368 |
| BseDI | CCNNGG | 2 cut(s) | 715, 1063 |
| BseGI | GGATG | 3 cut(s) | 688, 913, 1095 |
| BseJI | GATNNNNATC | 1 cut(s) | 1315 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1496 |
| BseMI | GCAATG | 3 cut(s) | 512, 777, 1609 |
| BseMII | CTCAG | 3 cut(s) | 849, 1248, 1601 |
| BseNI | ACTGG | 2 cut(s) | 333, 1264 |
| BseRI | GAGGAG | 1 cut(s) | 623 |
| BseXI | GCAGC | 4 cut(s) | 202, 407, 515, 1387 |
| BsgI | GTGCAG | 3 cut(s) | 414, 522, 1401 |
| Bsh1236I | CGCG | 1 cut(s) | 1218 |
| BshFI | GGCC | 2 cut(s) | 801, 1158 |
| BslFI | GGGAC | 1 cut(s) | 1216 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1496 |
| BsmAI | GTCTC | 3 cut(s) | 454, 568, 838 |
| BsmFI | GGGAC | 1 cut(s) | 1216 |
| BsmI | GAATGC | 1 cut(s) | 1229 |
| BsnI | GGCC | 2 cut(s) | 801, 1158 |
| Bsp119I | TTCGAA | 1 cut(s) | 644 |
| Bsp1407I | TGTACA | 1 cut(s) | 283 |
| Bsp143I | GATC | 3 cut(s) | 535, 1087, 1223 |
| BspACI | CCGC | 2 cut(s) | 158, 1218 |
| BspANI | GGCC | 2 cut(s) | 801, 1158 |
| BspCNI | CTCAG | 3 cut(s) | 848, 1247, 1600 |
| BspFNI | CGCG | 1 cut(s) | 1218 |
| BspLI | GGNNCC | 4 cut(s) | 6, 37, 438, 802 |
| BspT104I | TTCGAA | 1 cut(s) | 644 |
| BsrDI | GCAATG | 3 cut(s) | 512, 777, 1609 |
| BsrGI | TGTACA | 1 cut(s) | 283 |
| BsrI | ACTGG | 2 cut(s) | 333, 1264 |
| BssECI | CCNNGG | 2 cut(s) | 715, 1063 |
| BssMI | GATC | 3 cut(s) | 535, 1087, 1223 |
| BssNI | GRCGYC | 1 cut(s) | 329 |
| BssT1I | CCWWGG | 2 cut(s) | 715, 1063 |
| Bst2UI | CCWGG | 1 cut(s) | 368 |
| Bst4CI | ACNGT | 7 cut(s) | 179, 385, 448, 574, 690, 1030, 1548 |
| BstACI | GRCGYC | 1 cut(s) | 329 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 401 |
| BstAUI | TGTACA | 1 cut(s) | 283 |
| BstBI | TTCGAA | 1 cut(s) | 644 |
| BstDEI | CTNAG | 3 cut(s) | 835, 1234, 1587 |
| BstF5I | GGATG | 3 cut(s) | 688, 913, 1095 |
| BstFNI | CGCG | 1 cut(s) | 1218 |
| BstHHI | GCGC | 1 cut(s) | 1218 |
| BstKTI | GATC | 3 cut(s) | 538, 1090, 1226 |
| BstMAI | GTCTC | 3 cut(s) | 454, 568, 838 |
| BstMBI | GATC | 3 cut(s) | 535, 1087, 1223 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 76, 401, 557, 851 |
| BstNI | CCWGG | 1 cut(s) | 368 |
| BstNSI | RCATGY | 1 cut(s) | 1396 |
| BstSCI | CCNGG | 1 cut(s) | 366 |
| BstSFI | CTRYAG | 1 cut(s) | 552 |
| BstUI | CGCG | 1 cut(s) | 1218 |
| BstV1I | GCAGC | 4 cut(s) | 202, 407, 515, 1387 |
| BstX2I | RGATCY | 1 cut(s) | 1223 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1070 |
| BstYI | RGATCY | 1 cut(s) | 1223 |
| BsuI | GTATCC | 2 cut(s) | 266, 623 |
| BsuRI | GGCC | 2 cut(s) | 801, 1158 |
| BtrI | CACGTC | 1 cut(s) | 1421 |
| BtsCI | GGATG | 3 cut(s) | 688, 913, 1095 |
| BtsIMutI | CAGTG | 5 cut(s) | 54, 207, 319, 579, 1434 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1496 |
| CfoI | GCGC | 1 cut(s) | 1218 |
| Cfr13I | GGNCC | 3 cut(s) | 742, 800, 1156 |
| CseI | GACGC | 2 cut(s) | 318, 557 |
| Csp6I | GTAC | 6 cut(s) | 175, 284, 477, 722, 939, 1026 |
| CviAII | CATG | 4 cut(s) | 138, 703, 1393, 1529 |
| CviQI | GTAC | 6 cut(s) | 175, 284, 477, 722, 939, 1026 |
| DdeI | CTNAG | 3 cut(s) | 835, 1234, 1587 |
| DpnI | GATC | 3 cut(s) | 537, 1089, 1225 |
| DpnII | GATC | 3 cut(s) | 535, 1087, 1223 |
| Eco130I | CCWWGG | 2 cut(s) | 715, 1063 |
| Eco47I | GGWCC | 1 cut(s) | 742 |
| Eco57I | CTGAAG | 5 cut(s) | 66, 78, 219, 339, 804 |
| EcoO109I | RGGNCCY | 1 cut(s) | 742 |
| EcoRII | CCWGG | 1 cut(s) | 366 |
| EcoT14I | CCWWGG | 2 cut(s) | 715, 1063 |
| EcoT22I | ATGCAT | 1 cut(s) | 928 |
| ErhI | CCWWGG | 2 cut(s) | 715, 1063 |
| FaeI | CATG | 4 cut(s) | 141, 706, 1396, 1532 |
| FaqI | GGGAC | 1 cut(s) | 1216 |
| FatI | CATG | 4 cut(s) | 137, 702, 1392, 1528 |
| FauI | CCCGC | 1 cut(s) | 1211 |
| FbaI | TGATCA | 1 cut(s) | 535 |
| Fnu4HI | GCNGC | 4 cut(s) | 216, 396, 504, 1376 |
| FokI | GGATG | 3 cut(s) | 695, 920, 1082 |
| Fsp4HI | GCNGC | 4 cut(s) | 216, 396, 504, 1376 |
| FspBI | CTAG | 4 cut(s) | 117, 957, 1091, 1206 |
| GlaI | GCGC | 1 cut(s) | 1217 |
| GluI | GCNGC | 4 cut(s) | 216, 396, 504, 1376 |
| GsuI | CTGGAG | 2 cut(s) | 777, 1234 |
| HaeIII | GGCC | 2 cut(s) | 801, 1158 |
| HgaI | GACGC | 2 cut(s) | 318, 557 |
| HhaI | GCGC | 1 cut(s) | 1218 |
| Hin1I | GRCGYC | 1 cut(s) | 329 |
| Hin1II | CATG | 4 cut(s) | 141, 706, 1396, 1532 |
| Hin6I | GCGC | 1 cut(s) | 1216 |
| HinP1I | GCGC | 1 cut(s) | 1216 |
| HindIII | AAGCTT | 1 cut(s) | 843 |
| HinfI | GANTC | 4 cut(s) | 113, 161, 1139, 1247 |
| HphI | GGTGA | 3 cut(s) | 7, 534, 908 |
| Hpy166II | GTNNAC | 3 cut(s) | 284, 939, 967 |
| Hpy188I | TCNGA | 6 cut(s) | 24, 418, 568, 980, 1150, 1237 |
| Hpy188III | TCNNGA | 6 cut(s) | 593, 756, 837, 1127, 1251, 1570 |
| Hpy8I | GTNNAC | 3 cut(s) | 284, 939, 967 |
| HpyAV | CCTTC | 6 cut(s) | 337, 455, 528, 910, 1460, 1576 |
| HpyCH4III | ACNGT | 7 cut(s) | 179, 385, 448, 574, 690, 1030, 1548 |
| HpyCH4IV | ACGT | 3 cut(s) | 26, 490, 1420 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 76, 401, 557, 851 |
| HpyF3I | CTNAG | 3 cut(s) | 835, 1234, 1587 |
| HpySE526I | ACGT | 3 cut(s) | 26, 490, 1420 |
| Hsp92I | GRCGYC | 1 cut(s) | 329 |
| Hsp92II | CATG | 4 cut(s) | 141, 706, 1396, 1532 |
| HspAI | GCGC | 1 cut(s) | 1216 |
| Ksp22I | TGATCA | 1 cut(s) | 535 |
| Kzo9I | GATC | 3 cut(s) | 535, 1087, 1223 |
| LmnI | GCTCC | 1 cut(s) | 758 |
| Lsp1109I | GCAGC | 4 cut(s) | 202, 407, 515, 1387 |
| LweI | GCATC | 5 cut(s) | 202, 547, 646, 913, 1502 |
| MaeI | CTAG | 4 cut(s) | 117, 957, 1091, 1206 |
| MaeII | ACGT | 3 cut(s) | 26, 490, 1420 |
| MaeIII | GTNAC | 2 cut(s) | 1018, 1508 |
| MalI | GATC | 3 cut(s) | 537, 1089, 1225 |
| MboI | GATC | 3 cut(s) | 535, 1087, 1223 |
| MboII | GAAGA | 5 cut(s) | 212, 589, 633, 765, 1547 |
| MflI | RGATCY | 1 cut(s) | 1223 |
| MluCI | AATT | 8 cut(s) | 130, 220, 288, 751, 1130, 1411, 1429, 1579 |
| MlyI | GAGTC | 3 cut(s) | 122, 155, 1241 |
| Mph1103I | ATGCAT | 1 cut(s) | 928 |
| MseI | TTAA | 2 cut(s) | 819, 903 |
| MslI | CAYNNNNRTG | 1 cut(s) | 828 |
| MspA1I | CMGCKG | 1 cut(s) | 506 |
| MspR9I | CCNGG | 1 cut(s) | 368 |
| Mva1269I | GAATGC | 1 cut(s) | 1229 |
| MvaI | CCWGG | 1 cut(s) | 368 |
| MvnI | CGCG | 1 cut(s) | 1218 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 76, 401, 557, 851 |
| NdeII | GATC | 3 cut(s) | 535, 1087, 1223 |
| NlaIII | CATG | 4 cut(s) | 141, 706, 1396, 1532 |
| NlaIV | GGNNCC | 4 cut(s) | 6, 37, 438, 802 |
| NmuCI | GTSAC | 1 cut(s) | 1018 |
| NsiI | ATGCAT | 1 cut(s) | 928 |
| NspI | RCATGY | 1 cut(s) | 1396 |
| NspV | TTCGAA | 1 cut(s) | 644 |
| PctI | GAATGC | 1 cut(s) | 1229 |
| PfeI | GAWTC | 1 cut(s) | 1139 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1496 |
| PfoI | TCCNGGA | 1 cut(s) | 366 |
| PkrI | GCNGC | 4 cut(s) | 217, 397, 505, 1377 |
| PleI | GAGTC | 3 cut(s) | 121, 155, 1241 |
| PpsI | GAGTC | 3 cut(s) | 121, 155, 1241 |
| PpuMI | RGGWCCY | 1 cut(s) | 742 |
| Psp5II | RGGWCCY | 1 cut(s) | 742 |
| Psp6I | CCWGG | 1 cut(s) | 366 |
| PspGI | CCWGG | 1 cut(s) | 366 |
| PspN4I | GGNNCC | 4 cut(s) | 6, 37, 438, 802 |
| PspPI | GGNCC | 3 cut(s) | 742, 800, 1156 |
| PspPPI | RGGWCCY | 1 cut(s) | 742 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1496 |
| PsuI | RGATCY | 1 cut(s) | 1223 |
| PvuII | CAGCTG | 1 cut(s) | 506 |
| RsaI | GTAC | 6 cut(s) | 176, 285, 478, 723, 940, 1027 |
| RsaNI | GTAC | 6 cut(s) | 175, 284, 477, 722, 939, 1026 |
| RseI | CAYNNNNRTG | 1 cut(s) | 828 |
| SaqAI | TTAA | 2 cut(s) | 819, 903 |
| SatI | GCNGC | 4 cut(s) | 216, 396, 504, 1376 |
| Sau3AI | GATC | 3 cut(s) | 535, 1087, 1223 |
| Sau96I | GGNCC | 3 cut(s) | 742, 800, 1156 |
| ScaI | AGTACT | 3 cut(s) | 176, 478, 1027 |
| SchI | GAGTC | 3 cut(s) | 122, 155, 1241 |
| ScrFI | CCNGG | 1 cut(s) | 368 |
| SfaNI | GCATC | 5 cut(s) | 202, 547, 646, 913, 1502 |
| SfcI | CTRYAG | 1 cut(s) | 552 |
| SfuI | TTCGAA | 1 cut(s) | 644 |
| SinI | GGWCC | 1 cut(s) | 742 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 828 |
| SmlI | CTYRAG | 2 cut(s) | 472, 496 |
| SmoI | CTYRAG | 2 cut(s) | 472, 496 |
| SpeI | ACTAGT | 1 cut(s) | 1205 |
| Sse9I | AATT | 8 cut(s) | 130, 220, 288, 751, 1130, 1411, 1429, 1579 |
| SsiI | CCGC | 2 cut(s) | 158, 1218 |
| SspMI | CTAG | 4 cut(s) | 117, 957, 1091, 1206 |
| StyD4I | CCNGG | 1 cut(s) | 366 |
| StyI | CCWWGG | 2 cut(s) | 715, 1063 |
| TaaI | ACNGT | 7 cut(s) | 179, 385, 448, 574, 690, 1030, 1548 |
| TaiI | ACGT | 3 cut(s) | 29, 493, 1423 |
| TaqI | TCGA | 1 cut(s) | 644 |
| TasI | AATT | 8 cut(s) | 130, 220, 288, 751, 1130, 1411, 1429, 1579 |
| TatI | WGTACW | 5 cut(s) | 174, 283, 476, 721, 1025 |
| TfiI | GAWTC | 1 cut(s) | 1139 |
| Tru1I | TTAA | 2 cut(s) | 819, 903 |
| Tru9I | TTAA | 2 cut(s) | 819, 903 |
| TscAI | CASTG | 5 cut(s) | 61, 214, 319, 579, 1441 |
| TseFI | GTSAC | 1 cut(s) | 1018 |
| TseI | GCWGC | 4 cut(s) | 215, 395, 503, 1375 |
| Tsp45I | GTSAC | 1 cut(s) | 1018 |
| TspGWI | ACGGA | 1 cut(s) | 956 |
| TspRI | CASTG | 5 cut(s) | 61, 214, 319, 579, 1441 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1496 |
| VpaK11BI | GGWCC | 1 cut(s) | 742 |
| XapI | RAATTY | 4 cut(s) | 130, 220, 288, 1411 |
| XceI | RCATGY | 1 cut(s) | 1396 |
| XspI | CTAG | 4 cut(s) | 117, 957, 1091, 1206 |
| ZrmI | AGTACT | 3 cut(s) | 176, 478, 1027 |
| Zsp2I | ATGCAT | 1 cut(s) | 928 |