Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0002380

Physical Location & Seq

Genomic Coordinates Forward (+)

27650451 .. 27657055

Gene Structure 6605 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G011680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1764 bp

ATGGAACAGTCACTGAACTCTCTTGCATACAAGGGTTCTATACCTGAAGCAATCACTGAAGCAAAGAAGCAGAGGAAACTTTTTGTCGTGTATATTTCAGGTCAAGATTCTGACTCTAGTCATTTGGAAAACTCCACATGGACTGATCTAAATGTTGCAGTCTCTGTATCAAAGTACTGCATCTTATTGCATATTCTTGAAGAAAGCACTGATGCTGCAAACTTTTCTGCAATATACCCACAGAAATCAGCACCATGTATAACAGCGATTGGATTCAATGGTGTACAACTTTGGCAAAATGAGGGTTTTGTCAGTGCTGAAGTTCTGGCGTCTAGTTTAGAGAAGGTGTGGTTGAGTCTACAGATCCAGGAAACAGCTGCAACTGTTATGAGTGCAGCAGCTCTTGCTTCAAAGAAATCTGAACCATCTATTTCCGGGATTCCTACTACTGCCTCAACTGATGGAAGTTCCTCAAGTACAGGTGTTCTCGCTGATCAAGGAAGTTCCTCAAGTACGGTTGTTCCATTGTCTTTAACGGACAAAAACGGTCAATCACAAGATGCTGTGGAGGGCGCCCCTAACATGATGAACGAAAGTAAAGGTCCTGATTGCAAATTTGAGGATAAAACCAAGGATTTAAGAGACAAGACATCTTTGAAACCAGTTGATGGTGATGAGTTAAAGTGTGTCGGGGAAAAACAGTCCAGCAGCAGCTCTTCCACTGAAGCTGGCCAAGGATCACAGGATGTTGCTATAAAAGAGAGCACTTCTGGAGGGGACCATATTTCTTCCATTACTGAAGGTGGAAGCCCCAGAGGGATCACAGTTAATCAATCTGTCTTGGTAGGAGGTTCACAAGCATCTATTGTTGGAGAAAATGAAACTTTGAAAATTGGAAACAGTGAAGCTGAAAATGATAAGTGGGTTGATGGATCAAGTGATGCTCACTACCTCAGAGAGCTCACTGTTAATCAATCTGTTATCTTGGGAGGAGGTTCACAAGCATTTAGTATTGAAGAAAATGAAACTCTGCAAGTTGTAAAGGGTGAAGCTGAAGACCTTAAGAAGGTTGATGCAGTTGAAAATGCTAGAAGGGTGAATAGATCAAGTGATGCTTATTTGAATATCCGATTACCCGATGGTACCAGCCTGCAAGAGATGTTTTCTTTGACAAGCACTTTAAGAATTGTCAAAGGGTATATTGATGAAAACCAAGGAAGTGGTATCGGTAGTTATGACCTAGCCATCCCTTATCCTCGCAAGGTATTCACTGAGCAAGATCTAAGTAAACCATTATCTGAGTTGGGCCTATATGATAGACAAGCATTGATAGTGGTTCCACATCAGCAAGGAACTGGTTACCTCAGAGGGAGATCTTCACTCACAGACCAAACAGTTTCAAGAAATATTGCTGATGCCCCAAATGGAAGCAATGGGAGCTACTTTTCATTTGTGAAGAGAGTTTTGTCTTTCATAAATCCTTTCTCATATTTAGGTGGTGGTGCTAGCTCATCAAGTTCAGAAGAGCAATCCCAAAATGGCATGTGGCAATATAGCCCAAATCCTACAGTTCGAAATAACTTAACCCAAAGCACTTCTGAAAGTGGTAGAACTGAAGGGAGCCGCAGGCGGCCACCAGCATCTCCTTTTGGAAGTAATATTCACACACTGAAACATGATGAAGATGATGAACGATTCAGTGATAGAAACAAGTTCTGGAATGGTAATTCTACACAGTATGGTGGCGATGATGACAGCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0034976 GO:0036003 GO:0036503 GO:0042221 GO:0043161 GO:0043170 GO:0043618 GO:0043620 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1902680 GO:1903506 GO:1903508 GO:1990440 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBX

Protein Analysis

587

Amino Acids

62.96

Weight (kDa)

4.85

Isoelectric Point (pI)

51.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBX7_N	PF23187	10 - 90	1.4e-08	UBX7 N-terminal domain
UBX	PF00789	369 - 446	2.3e-18	UBX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43210 AT2G43210 AT2G43210
fragaria_vesca	FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270
malus_domestica	MD04G1038600.v1.1
prunus_persica	Prupe.1G189300_v2.0.a1 Prupe.1G189300_v2.0.a1 Prupe.1G189300_v2.0.a1 Prupe.1G189300_v2.0.a1 Prupe.1G189300_v2.0.a1 Prupe.1G189300_v2.0.a1 Prupe.1G189300_v2.0.a1
pyrus_communis	pycom04g03140
rosa_chinensis	RchiOBHm_Chr4g0407361
rosa_laevigata	RLG00000008730
rosa_multiflora	Rmu_sc0014661.1_g000002
rosa_roxburghii	Rroxscaffold_5G00351900
rosa_rugosa	Rorug04G0078800
rosa_samantha	Rh4AG143700 Rh4BG141500 Rh4CG150000 Rh4DG137600
rosa_wichuraiana	Rw4G011680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1142
AccB1I	GGYRCC	2 cut(s)	572, 1142
AccB7I	CCANNNNNTGG	1 cut(s)	668
AccI	GTMKAC	1 cut(s)	358
AciI	CCGC	2 cut(s)	1624, 1630
AclWI	GGATC	4 cut(s)	358, 745, 827, 940
AcoI	YGGCCR	2 cut(s)	730, 1631
AcsI	RAATTY	1 cut(s)	614
AcuI	CTGAAG	7 cut(s)	66, 78, 339, 744, 819, 1074, 1635
AcyI	GRCGYC	2 cut(s)	329, 573
AfaI	GTAC	5 cut(s)	176, 285, 478, 514, 1144
AfiI	CCNNNNNNNGG	2 cut(s)	668, 1066
AflII	CTTAAG	1 cut(s)	1061
AgsI	TTSAA	9 cut(s)	200, 277, 411, 658, 889, 1016, 1082, 1123, 1401
AjnI	CCWGG	1 cut(s)	366
AluBI	AGCT	9 cut(s)	377, 401, 714, 728, 908, 961, 1052, 1440, 1509
AluI	AGCT	9 cut(s)	377, 401, 714, 728, 908, 961, 1052, 1440, 1509
Alw21I	GWGCWC	2 cut(s)	767, 963
Alw26I	GTCTC	2 cut(s)	166, 636
AlwI	GGATC	4 cut(s)	358, 745, 827, 940
AlwNI	CAGNNNCTG	2 cut(s)	13, 164
AoxI	GGCC	3 cut(s)	730, 1306, 1631
ApeKI	GCWGC	6 cut(s)	215, 377, 395, 398, 708, 711
ApoI	RAATTY	1 cut(s)	614
Asp718I	GGTACC	1 cut(s)	1142
AspLEI	GCGC	1 cut(s)	575
AspS9I	GGNCC	3 cut(s)	602, 778, 1306
AsuC2I	CCSGG	1 cut(s)	436
AsuHPI	GGTGA	3 cut(s)	683, 1058, 1108
AsuII	TTCGAA	1 cut(s)	1573
AsuNHI	GCTAGC	1 cut(s)	1505
AvaII	GGWCC	2 cut(s)	602, 778
BalI	TGGCCA	1 cut(s)	732
BanI	GGYRCC	2 cut(s)	572, 1142
BanII	GRGCYC	1 cut(s)	963
BbsI	GAAGAC	1 cut(s)	1062
Bbv12I	GWGCWC	2 cut(s)	767, 963
BbvI	GCAGC	6 cut(s)	202, 364, 407, 410, 720, 723
BccI	CCATC	6 cut(s)	433, 455, 662, 923, 1133, 1253
BciT130I	CCWGG	1 cut(s)	368
BclI	TGATCA	1 cut(s)	493
BcnI	CCSGG	1 cut(s)	436
BcoDI	GTCTC	2 cut(s)	166, 636
BfaI	CTAG	5 cut(s)	117, 333, 1089, 1241, 1506
BfmI	CTRYAG	2 cut(s)	359, 1566
BfoI	RGCGCY	1 cut(s)	576
BfrI	CTTAAG	1 cut(s)	1061
BglII	AGATCT	2 cut(s)	1279, 1373
BisI	GCNGC	8 cut(s)	216, 378, 396, 399, 709, 712, 1624, 1631
BlsI	GCNGC	8 cut(s)	217, 379, 397, 400, 710, 713, 1625, 1632
BmcAI	AGTACT	1 cut(s)	176
Bme1390I	CCNGG	2 cut(s)	368, 436
Bme18I	GGWCC	2 cut(s)	602, 778
BmgT120I	GGNCC	3 cut(s)	602, 778, 1306
BmiI	GGNNCC	5 cut(s)	574, 779, 1144, 1338, 1622
BmrFI	CCNGG	2 cut(s)	368, 436
BmsI	GCATC	9 cut(s)	189, 202, 550, 869, 931, 1063, 1102, 1405, 1649
BmtI	GCTAGC	1 cut(s)	1509
BoxI	GACNNNNGTC	1 cut(s)	117
BpiI	GAAGAC	1 cut(s)	1062
BpmI	CTGGAG	1 cut(s)	792
Bpu14I	TTCGAA	1 cut(s)	1573
BpuEI	CTTGAG	2 cut(s)	457, 493
BpuMI	CCSGG	1 cut(s)	436
BsaHI	GRCGYC	2 cut(s)	329, 573
BsaJI	CCNNGG	3 cut(s)	630, 733, 1213
Bsc4I	CCNNNNNNNGG	2 cut(s)	668, 1066
Bse1I	ACTGG	2 cut(s)	662, 1360
Bse3DI	GCAATG	1 cut(s)	1438
BseBI	CCWGG	1 cut(s)	368
BseDI	CCNNGG	3 cut(s)	630, 733, 1213
BseGI	GGATG	2 cut(s)	751, 1245
BseLI	CCNNNNNNNGG	2 cut(s)	668, 1066
BseMI	GCAATG	1 cut(s)	1438
BseMII	CTCAG	4 cut(s)	967, 1263, 1290, 1378
BseNI	ACTGG	2 cut(s)	662, 1360
BseRI	GAGGAG	1 cut(s)	1005
BseXI	GCAGC	6 cut(s)	202, 364, 407, 410, 720, 723
BsgI	GTGCAG	1 cut(s)	414
BshFI	GGCC	3 cut(s)	732, 1308, 1633
BshNI	GGYRCC	2 cut(s)	572, 1142
BsiHKAI	GWGCWC	2 cut(s)	767, 963
BsiSI	CCGG	1 cut(s)	435
BslFI	GGGAC	1 cut(s)	791
BslI	CCNNNNNNNGG	2 cut(s)	668, 1066
BsmAI	GTCTC	2 cut(s)	166, 636
BsmFI	GGGAC	1 cut(s)	791
BsnI	GGCC	3 cut(s)	732, 1308, 1633
Bsp119I	TTCGAA	1 cut(s)	1573
Bsp1286I	GDGCHC	2 cut(s)	767, 963
Bsp1407I	TGTACA	1 cut(s)	283
Bsp143I	GATC	9 cut(s)	145, 363, 493, 737, 819, 932, 1103, 1279, 1373
BspACI	CCGC	2 cut(s)	1624, 1630
BspANI	GGCC	3 cut(s)	732, 1308, 1633
BspCNI	CTCAG	4 cut(s)	966, 1264, 1291, 1377
BspLI	GGNNCC	5 cut(s)	574, 779, 1144, 1338, 1622
BspOI	GCTAGC	1 cut(s)	1509
BspPI	GGATC	4 cut(s)	358, 745, 827, 940
BspQI	GCTCTTC	2 cut(s)	721, 1518
BspT104I	TTCGAA	1 cut(s)	1573
BspT107I	GGYRCC	2 cut(s)	572, 1142
BspTI	CTTAAG	1 cut(s)	1061
BsrDI	GCAATG	1 cut(s)	1438
BsrGI	TGTACA	1 cut(s)	283
BsrI	ACTGG	2 cut(s)	662, 1360
BssECI	CCNNGG	3 cut(s)	630, 733, 1213
BssMI	GATC	9 cut(s)	145, 363, 493, 737, 819, 932, 1103, 1279, 1373
BssNI	GRCGYC	2 cut(s)	329, 573
BssT1I	CCWWGG	3 cut(s)	630, 733, 1213
Bst2UI	CCWGG	1 cut(s)	368
Bst6I	CTCTTC	3 cut(s)	721, 1451, 1518
BstACI	GRCGYC	2 cut(s)	329, 573
BstAFI	CTTAAG	1 cut(s)	1061
BstAPI	GCANNNNNTGC	1 cut(s)	404
BstAUI	TGTACA	1 cut(s)	283
BstBI	TTCGAA	1 cut(s)	1573
BstC8I	GCNNGC	4 cut(s)	730, 1151, 1507, 1628
BstDEI	CTNAG	5 cut(s)	953, 1272, 1283, 1299, 1364
BstEII	GGTNACC	1 cut(s)	1358
BstENI	CCTNNNNNAGG	1 cut(s)	1064
BstF5I	GGATG	2 cut(s)	751, 1245
BstH2I	RGCGCY	1 cut(s)	576
BstHHI	GCGC	1 cut(s)	575
BstKTI	GATC	9 cut(s)	148, 366, 496, 740, 822, 935, 1106, 1282, 1376
BstMAI	GTCTC	2 cut(s)	166, 636
BstMBI	GATC	9 cut(s)	145, 363, 493, 737, 819, 932, 1103, 1279, 1373
BstMWI	GCNNNNNNNGC	2 cut(s)	404, 1437
BstNI	CCWGG	1 cut(s)	368
BstNSI	RCATGY	1 cut(s)	1546
BstPAI	GACNNNNGTC	1 cut(s)	117
BstPI	GGTNACC	1 cut(s)	1358
BstSCI	CCNGG	2 cut(s)	366, 434
BstSFI	CTRYAG	2 cut(s)	359, 1566
BstV1I	GCAGC	6 cut(s)	202, 364, 407, 410, 720, 723
BstV2I	GAAGAC	1 cut(s)	1062
BstX2I	RGATCY	3 cut(s)	363, 1279, 1373
BstXI	CCANNNNNNTGG	1 cut(s)	1220
BstYI	RGATCY	3 cut(s)	363, 1279, 1373
BsuRI	GGCC	3 cut(s)	732, 1308, 1633
BtsCI	GGATG	2 cut(s)	751, 1245
Cac8I	GCNNGC	4 cut(s)	730, 1151, 1507, 1628
CaiI	CAGNNNCTG	2 cut(s)	13, 164
CfoI	GCGC	1 cut(s)	575
Cfr13I	GGNCC	3 cut(s)	602, 778, 1306
CseI	GACGC	1 cut(s)	318
Csp6I	GTAC	5 cut(s)	175, 284, 477, 513, 1143
CviAII	CATG	5 cut(s)	138, 255, 583, 1543, 1676
CviQI	GTAC	5 cut(s)	175, 284, 477, 513, 1143
DdeI	CTNAG	5 cut(s)	953, 1272, 1283, 1299, 1364
DinI	GGCGCC	1 cut(s)	574
DpnI	GATC	9 cut(s)	147, 365, 495, 739, 821, 934, 1105, 1281, 1375
DpnII	GATC	9 cut(s)	145, 363, 493, 737, 819, 932, 1103, 1279, 1373
EaeI	YGGCCR	2 cut(s)	730, 1631
Eam1104I	CTCTTC	3 cut(s)	721, 1451, 1518
EarI	CTCTTC	3 cut(s)	721, 1451, 1518
Ecl136II	GAGCTC	1 cut(s)	961
Eco130I	CCWWGG	3 cut(s)	630, 733, 1213
Eco24I	GRGCYC	1 cut(s)	963
Eco47I	GGWCC	2 cut(s)	602, 778
Eco53kI	GAGCTC	1 cut(s)	961
Eco57I	CTGAAG	7 cut(s)	66, 78, 339, 744, 819, 1074, 1635
Eco91I	GGTNACC	1 cut(s)	1358
EcoICRI	GAGCTC	1 cut(s)	961
EcoNI	CCTNNNNNAGG	1 cut(s)	1064
EcoO109I	RGGNCCY	1 cut(s)	602
EcoO65I	GGTNACC	1 cut(s)	1358
EcoRII	CCWGG	1 cut(s)	366
EcoT14I	CCWWGG	3 cut(s)	630, 733, 1213
EcoT38I	GRGCYC	1 cut(s)	963
EgeI	GGCGCC	1 cut(s)	574
EheI	GGCGCC	1 cut(s)	574
ErhI	CCWWGG	3 cut(s)	630, 733, 1213
FaeI	CATG	5 cut(s)	141, 258, 586, 1546, 1679
FalI	AAGNNNNNCTT	2 cut(s)	1099, 1131
FaqI	GGGAC	1 cut(s)	791
FatI	CATG	5 cut(s)	137, 254, 582, 1542, 1675
FbaI	TGATCA	1 cut(s)	493
FblI	GTMKAC	1 cut(s)	358
Fnu4HI	GCNGC	8 cut(s)	216, 378, 396, 399, 709, 712, 1624, 1631
FokI	GGATG	2 cut(s)	758, 1232
FriOI	GRGCYC	1 cut(s)	963
Fsp4HI	GCNGC	8 cut(s)	216, 378, 396, 399, 709, 712, 1624, 1631
FspBI	CTAG	5 cut(s)	117, 333, 1089, 1241, 1506
GlaI	GCGC	1 cut(s)	574
GluI	GCNGC	8 cut(s)	216, 378, 396, 399, 709, 712, 1624, 1631
GsuI	CTGGAG	1 cut(s)	792
HaeII	RGCGCY	1 cut(s)	576
HaeIII	GGCC	3 cut(s)	732, 1308, 1633
HapII	CCGG	1 cut(s)	435
HgaI	GACGC	1 cut(s)	318
HhaI	GCGC	1 cut(s)	575
Hin1I	GRCGYC	2 cut(s)	329, 573
Hin1II	CATG	5 cut(s)	141, 258, 586, 1546, 1679
Hin6I	GCGC	1 cut(s)	573
HinP1I	GCGC	1 cut(s)	573
HinfI	GANTC	6 cut(s)	107, 113, 273, 355, 439, 1695
HpaII	CCGG	1 cut(s)	435
HphI	GGTGA	3 cut(s)	683, 1058, 1108
Hpy166II	GTNNAC	5 cut(s)	284, 359, 854, 998, 1289
Hpy188I	TCNGA	8 cut(s)	112, 421, 956, 1130, 1300, 1367, 1522, 1600
Hpy188III	TCNNGA	6 cut(s)	104, 197, 605, 771, 1401, 1717
Hpy8I	GTNNAC	5 cut(s)	284, 359, 854, 998, 1289
HpyAV	CCTTC	5 cut(s)	337, 794, 1060, 1086, 1610
HpyF10VI	GCNNNNNNNGC	2 cut(s)	404, 1437
HpyF3I	CTNAG	5 cut(s)	953, 1272, 1283, 1299, 1364
Hsp92I	GRCGYC	2 cut(s)	329, 573
Hsp92II	CATG	5 cut(s)	141, 258, 586, 1546, 1679
HspAI	GCGC	1 cut(s)	573
KasI	GGCGCC	1 cut(s)	572
KpnI	GGTACC	1 cut(s)	1146
Ksp22I	TGATCA	1 cut(s)	493
Kzo9I	GATC	9 cut(s)	145, 363, 493, 737, 819, 932, 1103, 1279, 1373
LguI	GCTCTTC	2 cut(s)	721, 1518
LmnI	GCTCC	2 cut(s)	1437, 1620
Lsp1109I	GCAGC	6 cut(s)	202, 364, 407, 410, 720, 723
LweI	GCATC	9 cut(s)	189, 202, 550, 869, 931, 1063, 1102, 1405, 1649
MaeI	CTAG	5 cut(s)	117, 333, 1089, 1241, 1506
MaeIII	GTNAC	2 cut(s)	9, 1358
MalI	GATC	9 cut(s)	147, 365, 495, 739, 821, 934, 1105, 1281, 1375
MboI	GATC	9 cut(s)	145, 363, 493, 737, 819, 932, 1103, 1279, 1373
MboII	GAAGA	9 cut(s)	212, 708, 780, 1028, 1067, 1368, 1468, 1535, 1694
MflI	RGATCY	3 cut(s)	363, 1279, 1373
MhlI	GDGCHC	2 cut(s)	767, 963
MlsI	TGGCCA	1 cut(s)	732
MluCI	AATT	4 cut(s)	614, 891, 1185, 1726
MluNI	TGGCCA	1 cut(s)	732
Mly113I	GGCGCC	1 cut(s)	573
MlyI	GAGTC	2 cut(s)	107, 364
MmeI	TCCRAC	1 cut(s)	850
Mox20I	TGGCCA	1 cut(s)	732
MscI	TGGCCA	1 cut(s)	732
MseI	TTAA	8 cut(s)	533, 638, 680, 828, 969, 1062, 1181, 1583
Msp20I	TGGCCA	1 cut(s)	732
MspA1I	CMGCKG	1 cut(s)	377
MspCI	CTTAAG	1 cut(s)	1061
MspI	CCGG	1 cut(s)	435
MspR9I	CCNGG	2 cut(s)	368, 436
MvaI	CCWGG	1 cut(s)	368
MwoI	GCNNNNNNNGC	2 cut(s)	404, 1437
NarI	GGCGCC	1 cut(s)	573
NciI	CCSGG	1 cut(s)	436
NdeII	GATC	9 cut(s)	145, 363, 493, 737, 819, 932, 1103, 1279, 1373
NheI	GCTAGC	1 cut(s)	1505
NlaIII	CATG	5 cut(s)	141, 258, 586, 1546, 1679
NlaIV	GGNNCC	5 cut(s)	574, 779, 1144, 1338, 1622
NmuCI	GTSAC	1 cut(s)	9
NspI	RCATGY	1 cut(s)	1546
NspV	TTCGAA	1 cut(s)	1573
PciSI	GCTCTTC	2 cut(s)	721, 1518
PfeI	GAWTC	4 cut(s)	107, 273, 439, 1695
PflMI	CCANNNNNTGG	1 cut(s)	668
PfoI	TCCNGGA	2 cut(s)	366, 434
PkrI	GCNGC	8 cut(s)	217, 379, 397, 400, 710, 713, 1625, 1632
PleI	GAGTC	2 cut(s)	107, 363
PluTI	GGCGCC	1 cut(s)	576
PpsI	GAGTC	2 cut(s)	107, 363
PpuMI	RGGWCCY	1 cut(s)	602
PshAI	GACNNNNGTC	1 cut(s)	117
Psp124BI	GAGCTC	1 cut(s)	963
Psp5II	RGGWCCY	1 cut(s)	602
Psp6I	CCWGG	1 cut(s)	366
PspEI	GGTNACC	1 cut(s)	1358
PspGI	CCWGG	1 cut(s)	366
PspN4I	GGNNCC	5 cut(s)	574, 779, 1144, 1338, 1622
PspPI	GGNCC	3 cut(s)	602, 778, 1306
PspPPI	RGGWCCY	1 cut(s)	602
PstNI	CAGNNNCTG	2 cut(s)	13, 164
PsuI	RGATCY	3 cut(s)	363, 1279, 1373
PvuII	CAGCTG	1 cut(s)	377
RsaI	GTAC	5 cut(s)	176, 285, 478, 514, 1144
RsaNI	GTAC	5 cut(s)	175, 284, 477, 513, 1143
SacI	GAGCTC	1 cut(s)	963
SapI	GCTCTTC	2 cut(s)	721, 1518
SaqAI	TTAA	8 cut(s)	533, 638, 680, 828, 969, 1062, 1181, 1583
SatI	GCNGC	8 cut(s)	216, 378, 396, 399, 709, 712, 1624, 1631
Sau3AI	GATC	9 cut(s)	145, 363, 493, 737, 819, 932, 1103, 1279, 1373
Sau96I	GGNCC	3 cut(s)	602, 778, 1306
ScaI	AGTACT	1 cut(s)	176
SchI	GAGTC	2 cut(s)	107, 364
ScrFI	CCNGG	2 cut(s)	368, 436
SduI	GDGCHC	2 cut(s)	767, 963
SfaNI	GCATC	9 cut(s)	189, 202, 550, 869, 931, 1063, 1102, 1405, 1649
SfcI	CTRYAG	2 cut(s)	359, 1566
SfoI	GGCGCC	1 cut(s)	574
SfuI	TTCGAA	1 cut(s)	1573
SinI	GGWCC	2 cut(s)	602, 778
SmlI	CTYRAG	3 cut(s)	472, 508, 1061
SmoI	CTYRAG	3 cut(s)	472, 508, 1061
Sse9I	AATT	4 cut(s)	614, 891, 1185, 1726
SsiI	CCGC	2 cut(s)	1624, 1630
SspDI	GGCGCC	1 cut(s)	572
SspI	AATATT	2 cut(s)	1408, 1660
SspMI	CTAG	5 cut(s)	117, 333, 1089, 1241, 1506
SstI	GAGCTC	1 cut(s)	963
StyD4I	CCNGG	2 cut(s)	366, 434
StyI	CCWWGG	3 cut(s)	630, 733, 1213
TaqI	TCGA	1 cut(s)	1573
TasI	AATT	4 cut(s)	614, 891, 1185, 1726
TatI	WGTACW	3 cut(s)	174, 283, 476
TauI	GCSGC	2 cut(s)	1626, 1633
TfiI	GAWTC	4 cut(s)	107, 273, 439, 1695
Tru1I	TTAA	8 cut(s)	533, 638, 680, 828, 969, 1062, 1181, 1583
Tru9I	TTAA	8 cut(s)	533, 638, 680, 828, 969, 1062, 1181, 1583
TseFI	GTSAC	1 cut(s)	9
TseI	GCWGC	6 cut(s)	215, 377, 395, 398, 708, 711
Tsp45I	GTSAC	1 cut(s)	9
TspDTI	ATGAA	8 cut(s)	602, 894, 1038, 1221, 1437, 1462, 1695, 1704
TspGWI	ACGGA	1 cut(s)	551
Van91I	CCANNNNNTGG	1 cut(s)	668
Vha464I	CTTAAG	1 cut(s)	1061
VpaK11BI	GGWCC	2 cut(s)	602, 778
XagI	CCTNNNNNAGG	1 cut(s)	1064
XapI	RAATTY	1 cut(s)	614
XceI	RCATGY	1 cut(s)	1546
XmiI	GTMKAC	1 cut(s)	358
XspI	CTAG	5 cut(s)	117, 333, 1089, 1241, 1506
ZrmI	AGTACT	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.