Ubx domain-containing
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G43210 AT2G43210 AT2G43210 |
| fragaria_vesca | FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 FvH4_4g11270 |
| malus_domestica | MD04G1038600.v1.1 |
| prunus_persica | Prupe.1G189300_v2.0.a1 Prupe.1G189300_v2.0.a1 Prupe.1G189300_v2.0.a1 Prupe.1G189300_v2.0.a1 Prupe.1G189300_v2.0.a1 Prupe.1G189300_v2.0.a1 Prupe.1G189300_v2.0.a1 |
| pyrus_communis | pycom04g03140 |
| rosa_chinensis | RchiOBHm_Chr4g0407361 |
| rosa_laevigata | RLG00000008730 |
| rosa_multiflora | Rmu_sc0014661.1_g000002 |
| rosa_roxburghii | Rroxscaffold_5G00351900 |
| rosa_rugosa | Rorug04G0078800 |
| rosa_samantha | Rh4AG143700 Rh4BG141500 Rh4CG150000 Rh4DG137600 |
| rosa_wichuraiana | Rw4G011680 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1427 |
| AccII | CGCG | 1 cut(s) | 1461 |
| AciI | CCGC | 2 cut(s) | 158, 1527 |
| AcsI | RAATTY | 2 cut(s) | 130, 1492 |
| AcuI | CTGAAG | 6 cut(s) | 66, 78, 219, 339, 735, 825 |
| AcvI | CACGTG | 1 cut(s) | 1326 |
| AcyI | GRCGYC | 1 cut(s) | 329 |
| AfaI | GTAC | 8 cut(s) | 176, 252, 285, 514, 654, 813, 871, 1253 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 367, 1427 |
| AflIII | ACRYGT | 1 cut(s) | 1349 |
| AgsI | TTSAA | 5 cut(s) | 408, 551, 904, 1258, 1456 |
| AjiI | CACGTC | 2 cut(s) | 1124, 1352 |
| AjnI | CCWGG | 1 cut(s) | 366 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 335, 367 |
| AluBI | AGCT | 7 cut(s) | 266, 323, 398, 482, 518, 627, 1290 |
| AluI | AGCT | 7 cut(s) | 266, 323, 398, 482, 518, 627, 1290 |
| Alw26I | GTCTC | 5 cut(s) | 15, 362, 454, 531, 769 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 563, 1427 |
| Ama87I | CYCGRG | 1 cut(s) | 1180 |
| AoxI | GGCC | 3 cut(s) | 642, 730, 1087 |
| ApeKI | GCWGC | 3 cut(s) | 215, 395, 572 |
| ApoI | RAATTY | 2 cut(s) | 130, 1492 |
| AspLEI | GCGC | 1 cut(s) | 1461 |
| AspS9I | GGNCC | 3 cut(s) | 643, 731, 1087 |
| AsuHPI | GGTGA | 5 cut(s) | 7, 470, 704, 782, 839 |
| AsuNHI | GCTAGC | 1 cut(s) | 1286 |
| AvaI | CYCGRG | 1 cut(s) | 1180 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 265, 298 |
| BbrPI | CACGTG | 1 cut(s) | 1326 |
| BbsI | GAAGAC | 1 cut(s) | 678 |
| BbvI | GCAGC | 3 cut(s) | 202, 407, 559 |
| BccI | CCATC | 3 cut(s) | 430, 1034, 1199 |
| BciT130I | CCWGG | 1 cut(s) | 368 |
| BciVI | GTATCC | 1 cut(s) | 266 |
| BclI | TGATCA | 2 cut(s) | 493, 1054 |
| BcoDI | GTCTC | 5 cut(s) | 15, 362, 454, 531, 769 |
| BfaI | CTAG | 3 cut(s) | 117, 1022, 1287 |
| BfmI | CTRYAG | 1 cut(s) | 564 |
| BfuI | GTATCC | 1 cut(s) | 266 |
| BisI | GCNGC | 4 cut(s) | 216, 396, 573, 1528 |
| BlsI | GCNGC | 4 cut(s) | 217, 397, 574, 1529 |
| BmcAI | AGTACT | 1 cut(s) | 176 |
| Bme1390I | CCNGG | 1 cut(s) | 368 |
| BmeT110I | CYCGRG | 1 cut(s) | 1180 |
| BmgBI | CACGTC | 2 cut(s) | 1124, 1352 |
| BmgT120I | GGNCC | 3 cut(s) | 643, 731, 1087 |
| BmiI | GGNNCC | 3 cut(s) | 37, 438, 1119 |
| BmrFI | CCNGG | 1 cut(s) | 368 |
| BmsI | GCATC | 5 cut(s) | 202, 550, 559, 584, 1433 |
| BmtI | GCTAGC | 1 cut(s) | 1290 |
| BpiI | GAAGAC | 1 cut(s) | 678 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 382, 414, 611, 643 |
| BpmI | CTGGAG | 2 cut(s) | 540, 708 |
| BpuEI | CTTGAG | 2 cut(s) | 457, 493 |
| BsaAI | YACGTR | 1 cut(s) | 1326 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1246 |
| BsaHI | GRCGYC | 1 cut(s) | 329 |
| BsaI | GGTCTC | 1 cut(s) | 362 |
| BsaJI | CCNNGG | 2 cut(s) | 646, 994 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 367, 1427 |
| Bse1I | ACTGG | 2 cut(s) | 333, 460 |
| Bse3DI | GCAATG | 1 cut(s) | 1219 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1246 |
| BseBI | CCWGG | 1 cut(s) | 368 |
| BseDI | CCNNGG | 2 cut(s) | 646, 994 |
| BseGI | GGATG | 2 cut(s) | 991, 1026 |
| BseJI | GATNNNNATC | 1 cut(s) | 1246 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 367, 1427 |
| BseMI | GCAATG | 1 cut(s) | 1219 |
| BseMII | CTCAG | 5 cut(s) | 177, 325, 780, 1136, 1215 |
| BseNI | ACTGG | 2 cut(s) | 333, 460 |
| BseRI | GAGGAG | 1 cut(s) | 1412 |
| BseXI | GCAGC | 3 cut(s) | 202, 407, 559 |
| BsgI | GTGCAG | 1 cut(s) | 414 |
| Bsh1236I | CGCG | 1 cut(s) | 1461 |
| BshFI | GGCC | 3 cut(s) | 644, 732, 1089 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1180 |
| BslFI | GGGAC | 2 cut(s) | 1147, 1317 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 367, 1427 |
| BsmAI | GTCTC | 5 cut(s) | 15, 362, 454, 531, 769 |
| BsmFI | GGGAC | 2 cut(s) | 1147, 1317 |
| BsmI | GAATGC | 1 cut(s) | 1160 |
| BsnI | GGCC | 3 cut(s) | 644, 732, 1089 |
| Bso31I | GGTCTC | 1 cut(s) | 362 |
| BsoBI | CYCGRG | 1 cut(s) | 1180 |
| Bsp1407I | TGTACA | 2 cut(s) | 283, 811 |
| Bsp143I | GATC | 5 cut(s) | 145, 493, 884, 1018, 1054 |
| BspACI | CCGC | 2 cut(s) | 158, 1527 |
| BspANI | GGCC | 3 cut(s) | 644, 732, 1089 |
| BspCNI | CTCAG | 5 cut(s) | 176, 324, 779, 1137, 1214 |
| BspFNI | CGCG | 1 cut(s) | 1461 |
| BspLI | GGNNCC | 3 cut(s) | 37, 438, 1119 |
| BspOI | GCTAGC | 1 cut(s) | 1290 |
| BspQI | GCTCTTC | 1 cut(s) | 634 |
| BspTNI | GGTCTC | 1 cut(s) | 362 |
| BsrDI | GCAATG | 1 cut(s) | 1219 |
| BsrGI | TGTACA | 2 cut(s) | 283, 811 |
| BsrI | ACTGG | 2 cut(s) | 333, 460 |
| BssECI | CCNNGG | 2 cut(s) | 646, 994 |
| BssMI | GATC | 5 cut(s) | 145, 493, 884, 1018, 1054 |
| BssNI | GRCGYC | 1 cut(s) | 329 |
| BssT1I | CCWWGG | 2 cut(s) | 646, 994 |
| Bst2UI | CCWGG | 1 cut(s) | 368 |
| Bst4CI | ACNGT | 6 cut(s) | 9, 385, 586, 748, 1192, 1479 |
| Bst6I | CTCTTC | 1 cut(s) | 634 |
| BstACI | GRCGYC | 1 cut(s) | 329 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 401 |
| BstAUI | TGTACA | 2 cut(s) | 283, 811 |
| BstBAI | YACGTR | 1 cut(s) | 1326 |
| BstC8I | GCNNGC | 2 cut(s) | 1104, 1288 |
| BstDEI | CTNAG | 5 cut(s) | 163, 311, 766, 1145, 1201 |
| BstF5I | GGATG | 2 cut(s) | 991, 1026 |
| BstFNI | CGCG | 1 cut(s) | 1461 |
| BstHHI | GCGC | 1 cut(s) | 1461 |
| BstKTI | GATC | 5 cut(s) | 148, 496, 887, 1021, 1057 |
| BstMAI | GTCTC | 5 cut(s) | 15, 362, 454, 531, 769 |
| BstMBI | GATC | 5 cut(s) | 145, 493, 884, 1018, 1054 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 401, 569 |
| BstNI | CCWGG | 1 cut(s) | 368 |
| BstSCI | CCNGG | 1 cut(s) | 366 |
| BstSFI | CTRYAG | 1 cut(s) | 564 |
| BstUI | CGCG | 1 cut(s) | 1461 |
| BstV1I | GCAGC | 3 cut(s) | 202, 407, 559 |
| BstV2I | GAAGAC | 1 cut(s) | 678 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1001 |
| BsuI | GTATCC | 1 cut(s) | 266 |
| BsuRI | GGCC | 3 cut(s) | 644, 732, 1089 |
| BtrI | CACGTC | 2 cut(s) | 1124, 1352 |
| BtsCI | GGATG | 2 cut(s) | 991, 1026 |
| BtsIMutI | CAGTG | 4 cut(s) | 207, 319, 591, 744 |
| Cac8I | GCNNGC | 2 cut(s) | 1104, 1288 |
| CaiI | CAGNNNCTG | 2 cut(s) | 563, 1427 |
| CfoI | GCGC | 1 cut(s) | 1461 |
| Cfr13I | GGNCC | 3 cut(s) | 643, 731, 1087 |
| CseI | GACGC | 2 cut(s) | 318, 1351 |
| Csp6I | GTAC | 8 cut(s) | 175, 251, 284, 513, 653, 812, 870, 1252 |
| CviAII | CATG | 2 cut(s) | 138, 348 |
| CviQI | GTAC | 8 cut(s) | 175, 251, 284, 513, 653, 812, 870, 1252 |
| DdeI | CTNAG | 5 cut(s) | 163, 311, 766, 1145, 1201 |
| DpnI | GATC | 5 cut(s) | 147, 495, 886, 1020, 1056 |
| DpnII | GATC | 5 cut(s) | 145, 493, 884, 1018, 1054 |
| Eam1104I | CTCTTC | 1 cut(s) | 634 |
| EarI | CTCTTC | 1 cut(s) | 634 |
| EciI | GGCGGA | 1 cut(s) | 173 |
| Eco130I | CCWWGG | 2 cut(s) | 646, 994 |
| Eco31I | GGTCTC | 1 cut(s) | 362 |
| Eco57I | CTGAAG | 6 cut(s) | 66, 78, 219, 339, 735, 825 |
| Eco72I | CACGTG | 1 cut(s) | 1326 |
| Eco88I | CYCGRG | 1 cut(s) | 1180 |
| EcoRII | CCWGG | 1 cut(s) | 366 |
| EcoT14I | CCWWGG | 2 cut(s) | 646, 994 |
| ErhI | CCWWGG | 2 cut(s) | 646, 994 |
| FaeI | CATG | 2 cut(s) | 141, 351 |
| FaqI | GGGAC | 2 cut(s) | 1147, 1317 |
| FatI | CATG | 2 cut(s) | 137, 347 |
| FbaI | TGATCA | 2 cut(s) | 493, 1054 |
| Fnu4HI | GCNGC | 4 cut(s) | 216, 396, 573, 1528 |
| FokI | GGATG | 2 cut(s) | 998, 1013 |
| Fsp4HI | GCNGC | 4 cut(s) | 216, 396, 573, 1528 |
| FspBI | CTAG | 3 cut(s) | 117, 1022, 1287 |
| GlaI | GCGC | 1 cut(s) | 1460 |
| GluI | GCNGC | 4 cut(s) | 216, 396, 573, 1528 |
| GsuI | CTGGAG | 2 cut(s) | 540, 708 |
| HaeIII | GGCC | 3 cut(s) | 644, 732, 1089 |
| HgaI | GACGC | 2 cut(s) | 318, 1351 |
| HhaI | GCGC | 1 cut(s) | 1461 |
| Hin1I | GRCGYC | 1 cut(s) | 329 |
| Hin1II | CATG | 2 cut(s) | 141, 351 |
| Hin6I | GCGC | 1 cut(s) | 1459 |
| HinP1I | GCGC | 1 cut(s) | 1459 |
| HincII | GTYRAC | 1 cut(s) | 898 |
| HindII | GTYRAC | 1 cut(s) | 898 |
| HinfI | GANTC | 5 cut(s) | 113, 161, 524, 620, 1178 |
| HpaI | GTTAAC | 1 cut(s) | 898 |
| HphI | GGTGA | 5 cut(s) | 7, 470, 704, 782, 839 |
| Hpy166II | GTNNAC | 3 cut(s) | 284, 779, 898 |
| Hpy188III | TCNNGA | 6 cut(s) | 557, 687, 1058, 1182, 1302, 1501 |
| Hpy8I | GTNNAC | 3 cut(s) | 284, 779, 898 |
| Hpy99I | CGWCG | 2 cut(s) | 1356, 1466 |
| HpyAV | CCTTC | 5 cut(s) | 337, 710, 767, 841, 1507 |
| HpyCH4III | ACNGT | 6 cut(s) | 9, 385, 586, 748, 1192, 1479 |
| HpyCH4IV | ACGT | 3 cut(s) | 1123, 1325, 1351 |
| HpyCH4V | TGCA | 6 cut(s) | 180, 190, 230, 395, 575, 1160 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 401, 569 |
| HpyF3I | CTNAG | 5 cut(s) | 163, 311, 766, 1145, 1201 |
| HpySE526I | ACGT | 3 cut(s) | 1123, 1325, 1351 |
| Hsp92I | GRCGYC | 1 cut(s) | 329 |
| Hsp92II | CATG | 2 cut(s) | 141, 351 |
| HspAI | GCGC | 1 cut(s) | 1459 |
| Ksp22I | TGATCA | 2 cut(s) | 493, 1054 |
| KspAI | GTTAAC | 1 cut(s) | 898 |
| Kzo9I | GATC | 5 cut(s) | 145, 493, 884, 1018, 1054 |
| LguI | GCTCTTC | 1 cut(s) | 634 |
| Lsp1109I | GCAGC | 3 cut(s) | 202, 407, 559 |
| LweI | GCATC | 5 cut(s) | 202, 550, 559, 584, 1433 |
| MaeI | CTAG | 3 cut(s) | 117, 1022, 1287 |
| MaeII | ACGT | 3 cut(s) | 1123, 1325, 1351 |
| MaeIII | GTNAC | 2 cut(s) | 1363, 1508 |
| MalI | GATC | 5 cut(s) | 147, 495, 886, 1020, 1056 |
| MboI | GATC | 5 cut(s) | 145, 493, 884, 1018, 1054 |
| MboII | GAAGA | 6 cut(s) | 212, 473, 621, 683, 848, 1478 |
| MluCI | AATT | 7 cut(s) | 130, 220, 534, 615, 865, 1138, 1492 |
| MlyI | GAGTC | 5 cut(s) | 122, 155, 533, 629, 1172 |
| MmeI | TCCRAC | 1 cut(s) | 1334 |
| MseI | TTAA | 6 cut(s) | 533, 702, 750, 897, 972, 1064 |
| MslI | CAYNNNNRTG | 2 cut(s) | 587, 759 |
| MspA1I | CMGCKG | 1 cut(s) | 518 |
| MspR9I | CCNGG | 1 cut(s) | 368 |
| Mva1269I | GAATGC | 1 cut(s) | 1160 |
| MvaI | CCWGG | 1 cut(s) | 368 |
| MvnI | CGCG | 1 cut(s) | 1461 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 401, 569 |
| NdeII | GATC | 5 cut(s) | 145, 493, 884, 1018, 1054 |
| NheI | GCTAGC | 1 cut(s) | 1286 |
| NlaIII | CATG | 2 cut(s) | 141, 351 |
| NlaIV | GGNNCC | 3 cut(s) | 37, 438, 1119 |
| NmuCI | GTSAC | 1 cut(s) | 1363 |
| PaeR7I | CTCGAG | 1 cut(s) | 1180 |
| PciSI | GCTCTTC | 1 cut(s) | 634 |
| PctI | GAATGC | 1 cut(s) | 1160 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1427 |
| PfoI | TCCNGGA | 1 cut(s) | 366 |
| PkrI | GCNGC | 4 cut(s) | 217, 397, 574, 1529 |
| PleI | GAGTC | 5 cut(s) | 121, 155, 532, 628, 1172 |
| PmaCI | CACGTG | 1 cut(s) | 1326 |
| PmlI | CACGTG | 1 cut(s) | 1326 |
| PpsI | GAGTC | 5 cut(s) | 121, 155, 532, 628, 1172 |
| Ppu21I | YACGTR | 1 cut(s) | 1326 |
| Psp6I | CCWGG | 1 cut(s) | 366 |
| PspCI | CACGTG | 1 cut(s) | 1326 |
| PspGI | CCWGG | 1 cut(s) | 366 |
| PspN4I | GGNNCC | 3 cut(s) | 37, 438, 1119 |
| PspPI | GGNCC | 3 cut(s) | 643, 731, 1087 |
| PstNI | CAGNNNCTG | 2 cut(s) | 563, 1427 |
| PvuII | CAGCTG | 1 cut(s) | 518 |
| RsaI | GTAC | 8 cut(s) | 176, 252, 285, 514, 654, 813, 871, 1253 |
| RsaNI | GTAC | 8 cut(s) | 175, 251, 284, 513, 653, 812, 870, 1252 |
| RseI | CAYNNNNRTG | 2 cut(s) | 587, 759 |
| SapI | GCTCTTC | 1 cut(s) | 634 |
| SaqAI | TTAA | 6 cut(s) | 533, 702, 750, 897, 972, 1064 |
| SatI | GCNGC | 4 cut(s) | 216, 396, 573, 1528 |
| Sau3AI | GATC | 5 cut(s) | 145, 493, 884, 1018, 1054 |
| Sau96I | GGNCC | 3 cut(s) | 643, 731, 1087 |
| ScaI | AGTACT | 1 cut(s) | 176 |
| SchI | GAGTC | 5 cut(s) | 122, 155, 533, 629, 1172 |
| ScrFI | CCNGG | 1 cut(s) | 368 |
| SfaNI | GCATC | 5 cut(s) | 202, 550, 559, 584, 1433 |
| SfcI | CTRYAG | 1 cut(s) | 564 |
| Sfr274I | CTCGAG | 1 cut(s) | 1180 |
| SlaI | CTCGAG | 1 cut(s) | 1180 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 587, 759 |
| SmlI | CTYRAG | 3 cut(s) | 472, 508, 1180 |
| SmoI | CTYRAG | 3 cut(s) | 472, 508, 1180 |
| Sse9I | AATT | 7 cut(s) | 130, 220, 534, 615, 865, 1138, 1492 |
| SsiI | CCGC | 2 cut(s) | 158, 1527 |
| SspMI | CTAG | 3 cut(s) | 117, 1022, 1287 |
| StyD4I | CCNGG | 1 cut(s) | 366 |
| StyI | CCWWGG | 2 cut(s) | 646, 994 |
| TaaI | ACNGT | 6 cut(s) | 9, 385, 586, 748, 1192, 1479 |
| TaiI | ACGT | 3 cut(s) | 1126, 1328, 1354 |
| TaqI | TCGA | 2 cut(s) | 425, 1181 |
| TasI | AATT | 7 cut(s) | 130, 220, 534, 615, 865, 1138, 1492 |
| TatI | WGTACW | 5 cut(s) | 174, 283, 512, 652, 811 |
| TauI | GCSGC | 1 cut(s) | 1530 |
| Tru1I | TTAA | 6 cut(s) | 533, 702, 750, 897, 972, 1064 |
| Tru9I | TTAA | 6 cut(s) | 533, 702, 750, 897, 972, 1064 |
| TscAI | CASTG | 4 cut(s) | 214, 319, 591, 751 |
| TseFI | GTSAC | 1 cut(s) | 1363 |
| TseI | GCWGC | 3 cut(s) | 215, 395, 572 |
| Tsp45I | GTSAC | 1 cut(s) | 1363 |
| TspDTI | ATGAA | 3 cut(s) | 605, 1002, 1488 |
| TspRI | CASTG | 4 cut(s) | 214, 319, 591, 751 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1427 |
| XapI | RAATTY | 2 cut(s) | 130, 1492 |
| XhoI | CTCGAG | 1 cut(s) | 1180 |
| XspI | CTAG | 3 cut(s) | 117, 1022, 1287 |
| ZrmI | AGTACT | 1 cut(s) | 176 |