MD04G1038600.v1.1

Ubx domain-containing

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Forward (+)
4263883 .. 4271776
7894 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1038600.v1.1.491

Sequence Viewer

Length: 1548 bp
ATGGAACAGTCTCTCACCTCTCTTACATACAAAGGTTCCATACCTGAAGCAATAACTGAAGCAAAGAAGCAGAGGAAACTCTTTGTTGTGTATATTTCGGGTAAAAATGACGAGTCTAGTCGTTTGGAAAATTCTACATGGACTGATCTAAATGTGGCGGACTCAGTAGAAAAGTACTGCATTTTATTGCATATCCCTGAAGAAAGCACTGATGCTGCCAATTTTTCTGCAATATACCCACAGAAATCTGTACCTTGTATAACAGCTATTGGATACAATGGTGTACAACTTTGGCAGAATGAGGGTTTTCTCAGTGCTGAAGCTCTGGCGTCCAGTTTAGAGAAGGCATGGTTGGGTCTCCATATCCAGGAAACAACTGCGACTGTATTGAGTGCAGCTCTTGCTTCAAATAAATCCGAACCATCGACTTCTGGGGTTCCTAATGCTGTCTCAACTGGTGAAGAAAGTTCCTCAAGTAAAGCTGTTATCTCTGATCAAGGAAGTTCCTCAAGTACAGCTGTTGAGTCTCCCTTAATTGACACAAATGTTCAATCTCCAGATGCTGTAGATGCTGCATCTGACACAGTGATGAAACATAAAGGTCGTGGTTGTAAAATTGAGTCCAGCTCTTCCACCAAATCGGCCCAAGGAGTACATAATGTTGCTATGGAAGACCTGAACAAGTCTGGAGGTGATATTGTTAATCCTGTTGCTGAAGGTAGTTATAGTGGCCCAGAAAAGACCACTGTTAATCATTCAGGTGTCTCAGGTGAAGGTTCACAAGCAGTTAGTAATGTAAAATCTGAAGTTGTACAAGTTGATAAGGGTGAAGCCGAAGATGATAAGAAGGTTGATACCTTTGAGAATTGTACGAGGGTCAGCAGATCAAGTGATGTTAACTTGAATATACGATTGCCCAATGGTGTCAGCCTGAAAGAGAAGTTTTCTATAACAAGCACTATGAGAATGGTTAAAGACTATGTGGATGAAAACCAAGGAAGTGGTATTGGCAACTATGATCTAGCCATCCCTTATCCTCGCAAGATATTCTGTGATCAAGATTTAAGCAAATCGTTATCAGATTTGGGCCTGTTTGACAGGCAAGCATTGATAGTGGTTCCACGTCAGAAAGGGACTAATTATCTGAGTGGGAAATCTGCATTCTCTGACCAAACAGACTCGAGAAATACTGTTAGTTCCTCAGATGGAAGCAATGGGGGATATTTTTCGTATGCGAAAAGATTTTTATCGTACTTCAATCCTCTTTCTTATTTGGGTGGTGGTGCTAGCTCATCAAGTTCGGGACAGCAATCCGAAAATGGCACGTGGGAATATAGCCCTAACCCTACACGTCGGAATAGCGTCACTCAAAACGCTTCTACAAGTGGTAAAAGTGAGGAGAAAAAGAGCAGGAAGCCACCAGCATCTGGTTTCGGAAGCAACATTCACACTTTGAAGCGCGACGAAGATGATGAACGGTTCAGCGACAGAAATTCCTTCTGGAATGGTAACTCTACCGAGTATGGCGGCAACGATGATAGTAAATAA

Protein Analysis

516

Amino Acids

55.28

Weight (kDa)

5.11

Isoelectric Point (pI)

41.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UBX7_N PF23187 10 - 91 2e-08 UBX7 N-terminal domain
UBX PF00789 296 - 373 1.2e-18 UBX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1427
AccII CGCG 1 cut(s) 1461
AciI CCGC 2 cut(s) 158, 1527
AcsI RAATTY 2 cut(s) 130, 1492
AcuI CTGAAG 6 cut(s) 66, 78, 219, 339, 735, 825
AcvI CACGTG 1 cut(s) 1326
AcyI GRCGYC 1 cut(s) 329
AfaI GTAC 8 cut(s) 176, 252, 285, 514, 654, 813, 871, 1253
AfiI CCNNNNNNNGG 2 cut(s) 367, 1427
AflIII ACRYGT 1 cut(s) 1349
AgsI TTSAA 5 cut(s) 408, 551, 904, 1258, 1456
AjiI CACGTC 2 cut(s) 1124, 1352
AjnI CCWGG 1 cut(s) 366
AjuI GAANNNNNNNTTGG 2 cut(s) 335, 367
AluBI AGCT 7 cut(s) 266, 323, 398, 482, 518, 627, 1290
AluI AGCT 7 cut(s) 266, 323, 398, 482, 518, 627, 1290
Alw26I GTCTC 5 cut(s) 15, 362, 454, 531, 769
AlwNI CAGNNNCTG 2 cut(s) 563, 1427
Ama87I CYCGRG 1 cut(s) 1180
AoxI GGCC 3 cut(s) 642, 730, 1087
ApeKI GCWGC 3 cut(s) 215, 395, 572
ApoI RAATTY 2 cut(s) 130, 1492
AspLEI GCGC 1 cut(s) 1461
AspS9I GGNCC 3 cut(s) 643, 731, 1087
AsuHPI GGTGA 5 cut(s) 7, 470, 704, 782, 839
AsuNHI GCTAGC 1 cut(s) 1286
AvaI CYCGRG 1 cut(s) 1180
BaeI ACNNNNGTAYC 2 cut(s) 265, 298
BbrPI CACGTG 1 cut(s) 1326
BbsI GAAGAC 1 cut(s) 678
BbvI GCAGC 3 cut(s) 202, 407, 559
BccI CCATC 3 cut(s) 430, 1034, 1199
BciT130I CCWGG 1 cut(s) 368
BciVI GTATCC 1 cut(s) 266
BclI TGATCA 2 cut(s) 493, 1054
BcoDI GTCTC 5 cut(s) 15, 362, 454, 531, 769
BfaI CTAG 3 cut(s) 117, 1022, 1287
BfmI CTRYAG 1 cut(s) 564
BfuI GTATCC 1 cut(s) 266
BisI GCNGC 4 cut(s) 216, 396, 573, 1528
BlsI GCNGC 4 cut(s) 217, 397, 574, 1529
BmcAI AGTACT 1 cut(s) 176
Bme1390I CCNGG 1 cut(s) 368
BmeT110I CYCGRG 1 cut(s) 1180
BmgBI CACGTC 2 cut(s) 1124, 1352
BmgT120I GGNCC 3 cut(s) 643, 731, 1087
BmiI GGNNCC 3 cut(s) 37, 438, 1119
BmrFI CCNGG 1 cut(s) 368
BmsI GCATC 5 cut(s) 202, 550, 559, 584, 1433
BmtI GCTAGC 1 cut(s) 1290
BpiI GAAGAC 1 cut(s) 678
BplI GAGNNNNNCTC 4 cut(s) 382, 414, 611, 643
BpmI CTGGAG 2 cut(s) 540, 708
BpuEI CTTGAG 2 cut(s) 457, 493
BsaAI YACGTR 1 cut(s) 1326
BsaBI GATNNNNATC 1 cut(s) 1246
BsaHI GRCGYC 1 cut(s) 329
BsaI GGTCTC 1 cut(s) 362
BsaJI CCNNGG 2 cut(s) 646, 994
Bsc4I CCNNNNNNNGG 2 cut(s) 367, 1427
Bse1I ACTGG 2 cut(s) 333, 460
Bse3DI GCAATG 1 cut(s) 1219
Bse8I GATNNNNATC 1 cut(s) 1246
BseBI CCWGG 1 cut(s) 368
BseDI CCNNGG 2 cut(s) 646, 994
BseGI GGATG 2 cut(s) 991, 1026
BseJI GATNNNNATC 1 cut(s) 1246
BseLI CCNNNNNNNGG 2 cut(s) 367, 1427
BseMI GCAATG 1 cut(s) 1219
BseMII CTCAG 5 cut(s) 177, 325, 780, 1136, 1215
BseNI ACTGG 2 cut(s) 333, 460
BseRI GAGGAG 1 cut(s) 1412
BseXI GCAGC 3 cut(s) 202, 407, 559
BsgI GTGCAG 1 cut(s) 414
Bsh1236I CGCG 1 cut(s) 1461
BshFI GGCC 3 cut(s) 644, 732, 1089
BsiHKCI CYCGRG 1 cut(s) 1180
BslFI GGGAC 2 cut(s) 1147, 1317
BslI CCNNNNNNNGG 2 cut(s) 367, 1427
BsmAI GTCTC 5 cut(s) 15, 362, 454, 531, 769
BsmFI GGGAC 2 cut(s) 1147, 1317
BsmI GAATGC 1 cut(s) 1160
BsnI GGCC 3 cut(s) 644, 732, 1089
Bso31I GGTCTC 1 cut(s) 362
BsoBI CYCGRG 1 cut(s) 1180
Bsp1407I TGTACA 2 cut(s) 283, 811
Bsp143I GATC 5 cut(s) 145, 493, 884, 1018, 1054
BspACI CCGC 2 cut(s) 158, 1527
BspANI GGCC 3 cut(s) 644, 732, 1089
BspCNI CTCAG 5 cut(s) 176, 324, 779, 1137, 1214
BspFNI CGCG 1 cut(s) 1461
BspLI GGNNCC 3 cut(s) 37, 438, 1119
BspOI GCTAGC 1 cut(s) 1290
BspQI GCTCTTC 1 cut(s) 634
BspTNI GGTCTC 1 cut(s) 362
BsrDI GCAATG 1 cut(s) 1219
BsrGI TGTACA 2 cut(s) 283, 811
BsrI ACTGG 2 cut(s) 333, 460
BssECI CCNNGG 2 cut(s) 646, 994
BssMI GATC 5 cut(s) 145, 493, 884, 1018, 1054
BssNI GRCGYC 1 cut(s) 329
BssT1I CCWWGG 2 cut(s) 646, 994
Bst2UI CCWGG 1 cut(s) 368
Bst4CI ACNGT 6 cut(s) 9, 385, 586, 748, 1192, 1479
Bst6I CTCTTC 1 cut(s) 634
BstACI GRCGYC 1 cut(s) 329
BstAPI GCANNNNNTGC 1 cut(s) 401
BstAUI TGTACA 2 cut(s) 283, 811
BstBAI YACGTR 1 cut(s) 1326
BstC8I GCNNGC 2 cut(s) 1104, 1288
BstDEI CTNAG 5 cut(s) 163, 311, 766, 1145, 1201
BstF5I GGATG 2 cut(s) 991, 1026
BstFNI CGCG 1 cut(s) 1461
BstHHI GCGC 1 cut(s) 1461
BstKTI GATC 5 cut(s) 148, 496, 887, 1021, 1057
BstMAI GTCTC 5 cut(s) 15, 362, 454, 531, 769
BstMBI GATC 5 cut(s) 145, 493, 884, 1018, 1054
BstMWI GCNNNNNNNGC 2 cut(s) 401, 569
BstNI CCWGG 1 cut(s) 368
BstSCI CCNGG 1 cut(s) 366
BstSFI CTRYAG 1 cut(s) 564
BstUI CGCG 1 cut(s) 1461
BstV1I GCAGC 3 cut(s) 202, 407, 559
BstV2I GAAGAC 1 cut(s) 678
BstXI CCANNNNNNTGG 1 cut(s) 1001
BsuI GTATCC 1 cut(s) 266
BsuRI GGCC 3 cut(s) 644, 732, 1089
BtrI CACGTC 2 cut(s) 1124, 1352
BtsCI GGATG 2 cut(s) 991, 1026
BtsIMutI CAGTG 4 cut(s) 207, 319, 591, 744
Cac8I GCNNGC 2 cut(s) 1104, 1288
CaiI CAGNNNCTG 2 cut(s) 563, 1427
CfoI GCGC 1 cut(s) 1461
Cfr13I GGNCC 3 cut(s) 643, 731, 1087
CseI GACGC 2 cut(s) 318, 1351
Csp6I GTAC 8 cut(s) 175, 251, 284, 513, 653, 812, 870, 1252
CviAII CATG 2 cut(s) 138, 348
CviQI GTAC 8 cut(s) 175, 251, 284, 513, 653, 812, 870, 1252
DdeI CTNAG 5 cut(s) 163, 311, 766, 1145, 1201
DpnI GATC 5 cut(s) 147, 495, 886, 1020, 1056
DpnII GATC 5 cut(s) 145, 493, 884, 1018, 1054
Eam1104I CTCTTC 1 cut(s) 634
EarI CTCTTC 1 cut(s) 634
EciI GGCGGA 1 cut(s) 173
Eco130I CCWWGG 2 cut(s) 646, 994
Eco31I GGTCTC 1 cut(s) 362
Eco57I CTGAAG 6 cut(s) 66, 78, 219, 339, 735, 825
Eco72I CACGTG 1 cut(s) 1326
Eco88I CYCGRG 1 cut(s) 1180
EcoRII CCWGG 1 cut(s) 366
EcoT14I CCWWGG 2 cut(s) 646, 994
ErhI CCWWGG 2 cut(s) 646, 994
FaeI CATG 2 cut(s) 141, 351
FaqI GGGAC 2 cut(s) 1147, 1317
FatI CATG 2 cut(s) 137, 347
FbaI TGATCA 2 cut(s) 493, 1054
Fnu4HI GCNGC 4 cut(s) 216, 396, 573, 1528
FokI GGATG 2 cut(s) 998, 1013
Fsp4HI GCNGC 4 cut(s) 216, 396, 573, 1528
FspBI CTAG 3 cut(s) 117, 1022, 1287
GlaI GCGC 1 cut(s) 1460
GluI GCNGC 4 cut(s) 216, 396, 573, 1528
GsuI CTGGAG 2 cut(s) 540, 708
HaeIII GGCC 3 cut(s) 644, 732, 1089
HgaI GACGC 2 cut(s) 318, 1351
HhaI GCGC 1 cut(s) 1461
Hin1I GRCGYC 1 cut(s) 329
Hin1II CATG 2 cut(s) 141, 351
Hin6I GCGC 1 cut(s) 1459
HinP1I GCGC 1 cut(s) 1459
HincII GTYRAC 1 cut(s) 898
HindII GTYRAC 1 cut(s) 898
HinfI GANTC 5 cut(s) 113, 161, 524, 620, 1178
HpaI GTTAAC 1 cut(s) 898
HphI GGTGA 5 cut(s) 7, 470, 704, 782, 839
Hpy166II GTNNAC 3 cut(s) 284, 779, 898
Hpy188III TCNNGA 6 cut(s) 557, 687, 1058, 1182, 1302, 1501
Hpy8I GTNNAC 3 cut(s) 284, 779, 898
Hpy99I CGWCG 2 cut(s) 1356, 1466
HpyAV CCTTC 5 cut(s) 337, 710, 767, 841, 1507
HpyCH4III ACNGT 6 cut(s) 9, 385, 586, 748, 1192, 1479
HpyCH4IV ACGT 3 cut(s) 1123, 1325, 1351
HpyCH4V TGCA 6 cut(s) 180, 190, 230, 395, 575, 1160
HpyF10VI GCNNNNNNNGC 2 cut(s) 401, 569
HpyF3I CTNAG 5 cut(s) 163, 311, 766, 1145, 1201
HpySE526I ACGT 3 cut(s) 1123, 1325, 1351
Hsp92I GRCGYC 1 cut(s) 329
Hsp92II CATG 2 cut(s) 141, 351
HspAI GCGC 1 cut(s) 1459
Ksp22I TGATCA 2 cut(s) 493, 1054
KspAI GTTAAC 1 cut(s) 898
Kzo9I GATC 5 cut(s) 145, 493, 884, 1018, 1054
LguI GCTCTTC 1 cut(s) 634
Lsp1109I GCAGC 3 cut(s) 202, 407, 559
LweI GCATC 5 cut(s) 202, 550, 559, 584, 1433
MaeI CTAG 3 cut(s) 117, 1022, 1287
MaeII ACGT 3 cut(s) 1123, 1325, 1351
MaeIII GTNAC 2 cut(s) 1363, 1508
MalI GATC 5 cut(s) 147, 495, 886, 1020, 1056
MboI GATC 5 cut(s) 145, 493, 884, 1018, 1054
MboII GAAGA 6 cut(s) 212, 473, 621, 683, 848, 1478
MluCI AATT 7 cut(s) 130, 220, 534, 615, 865, 1138, 1492
MlyI GAGTC 5 cut(s) 122, 155, 533, 629, 1172
MmeI TCCRAC 1 cut(s) 1334
MseI TTAA 6 cut(s) 533, 702, 750, 897, 972, 1064
MslI CAYNNNNRTG 2 cut(s) 587, 759
MspA1I CMGCKG 1 cut(s) 518
MspR9I CCNGG 1 cut(s) 368
Mva1269I GAATGC 1 cut(s) 1160
MvaI CCWGG 1 cut(s) 368
MvnI CGCG 1 cut(s) 1461
MwoI GCNNNNNNNGC 2 cut(s) 401, 569
NdeII GATC 5 cut(s) 145, 493, 884, 1018, 1054
NheI GCTAGC 1 cut(s) 1286
NlaIII CATG 2 cut(s) 141, 351
NlaIV GGNNCC 3 cut(s) 37, 438, 1119
NmuCI GTSAC 1 cut(s) 1363
PaeR7I CTCGAG 1 cut(s) 1180
PciSI GCTCTTC 1 cut(s) 634
PctI GAATGC 1 cut(s) 1160
PflMI CCANNNNNTGG 1 cut(s) 1427
PfoI TCCNGGA 1 cut(s) 366
PkrI GCNGC 4 cut(s) 217, 397, 574, 1529
PleI GAGTC 5 cut(s) 121, 155, 532, 628, 1172
PmaCI CACGTG 1 cut(s) 1326
PmlI CACGTG 1 cut(s) 1326
PpsI GAGTC 5 cut(s) 121, 155, 532, 628, 1172
Ppu21I YACGTR 1 cut(s) 1326
Psp6I CCWGG 1 cut(s) 366
PspCI CACGTG 1 cut(s) 1326
PspGI CCWGG 1 cut(s) 366
PspN4I GGNNCC 3 cut(s) 37, 438, 1119
PspPI GGNCC 3 cut(s) 643, 731, 1087
PstNI CAGNNNCTG 2 cut(s) 563, 1427
PvuII CAGCTG 1 cut(s) 518
RsaI GTAC 8 cut(s) 176, 252, 285, 514, 654, 813, 871, 1253
RsaNI GTAC 8 cut(s) 175, 251, 284, 513, 653, 812, 870, 1252
RseI CAYNNNNRTG 2 cut(s) 587, 759
SapI GCTCTTC 1 cut(s) 634
SaqAI TTAA 6 cut(s) 533, 702, 750, 897, 972, 1064
SatI GCNGC 4 cut(s) 216, 396, 573, 1528
Sau3AI GATC 5 cut(s) 145, 493, 884, 1018, 1054
Sau96I GGNCC 3 cut(s) 643, 731, 1087
ScaI AGTACT 1 cut(s) 176
SchI GAGTC 5 cut(s) 122, 155, 533, 629, 1172
ScrFI CCNGG 1 cut(s) 368
SfaNI GCATC 5 cut(s) 202, 550, 559, 584, 1433
SfcI CTRYAG 1 cut(s) 564
Sfr274I CTCGAG 1 cut(s) 1180
SlaI CTCGAG 1 cut(s) 1180
SmiMI CAYNNNNRTG 2 cut(s) 587, 759
SmlI CTYRAG 3 cut(s) 472, 508, 1180
SmoI CTYRAG 3 cut(s) 472, 508, 1180
Sse9I AATT 7 cut(s) 130, 220, 534, 615, 865, 1138, 1492
SsiI CCGC 2 cut(s) 158, 1527
SspMI CTAG 3 cut(s) 117, 1022, 1287
StyD4I CCNGG 1 cut(s) 366
StyI CCWWGG 2 cut(s) 646, 994
TaaI ACNGT 6 cut(s) 9, 385, 586, 748, 1192, 1479
TaiI ACGT 3 cut(s) 1126, 1328, 1354
TaqI TCGA 2 cut(s) 425, 1181
TasI AATT 7 cut(s) 130, 220, 534, 615, 865, 1138, 1492
TatI WGTACW 5 cut(s) 174, 283, 512, 652, 811
TauI GCSGC 1 cut(s) 1530
Tru1I TTAA 6 cut(s) 533, 702, 750, 897, 972, 1064
Tru9I TTAA 6 cut(s) 533, 702, 750, 897, 972, 1064
TscAI CASTG 4 cut(s) 214, 319, 591, 751
TseFI GTSAC 1 cut(s) 1363
TseI GCWGC 3 cut(s) 215, 395, 572
Tsp45I GTSAC 1 cut(s) 1363
TspDTI ATGAA 3 cut(s) 605, 1002, 1488
TspRI CASTG 4 cut(s) 214, 319, 591, 751
Van91I CCANNNNNTGG 1 cut(s) 1427
XapI RAATTY 2 cut(s) 130, 1492
XhoI CTCGAG 1 cut(s) 1180
XspI CTAG 3 cut(s) 117, 1022, 1287
ZrmI AGTACT 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.