Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004973

Physical Location & Seq

Genomic Coordinates Reverse (-)

18253497 .. 18258293

Gene Structure 4797 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G44140.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1404 bp

ATGAAGGCTTTATGTGATAGATTTGTTCCTCAACAATGTTCTTCATCAAGCAAGAGTGATACGCATGATAAATCCCCTTTAGTTTCAGATTCTGGACCTAGTGATAATAAGTCCAAGTTTACCTTATGGTCAAACGTGTTTACGTCTTCTTCCTCAGTTTCTCAACCGTATAGGGAGTCTTCAACTTCTGGGCATAAGCAAGTTTGCACCACTCGTAATGGTTGGACAGCATTTGTAAAAAGAGTCTCTATGGCTAGTGGAGCAATTAGGAGATTCCAGGAGCGTGTTTTAGGGCCTAATAGGACCGGTCTTCCGAGCACAACTAGTGACGTATGGCTCTTGGGTGTCTGCTATAAAATATCTGCGGATGAGAACTCAGGGGAAACCGATACTGGCACTGTATTGGCTGCATTGCAACTAGATTTTTCATCCAAAATACTGATGACATATCGTAAAGGTTTTGAACCCTTTAGAGACACAACTTATACCAGCGATGTGAACTGGGGTTGCATGATTCGAAGTAGCCAGATGCTTTTTGCTCAGGCGTTGCTTTTCCATAGGCTGGGGAGGGCTTGGACTAAGAAATCTGAGCTTCCTGAACAGGAATACTTAGAGACCTTGGAACCTTTTGGTGATTCCGAGCCTTCAGCTTTCTCCATCCACAATCTTATAATAGCTGGAGCGTCCTATGGTCTCGCTGCTGGGTCATGGGTAGGACCGTATGCCATTTGTCGAGCGTGGGAGTCATTAGCGTGCAAGAAGAGAAAACAAACTGATTCTAAAAACCAGACGCTTCCTATGGCTGTTCATATCGTTTCTGGCAGCGAAGATGGAGAGAGAGGTGGGGCTCCAATTCTCTGTATAGAAGATGCTACCAAATCTTGTCTAGAATTCTCAAAAGGACAGTCTGAGTGGACACCGATTATCCTTTTGGTTCCACTGGTTCTTGGGCTTGACAGTGTGAATCCCAGGTACATTCCATCTCTCGTAGCCACATTCACTTTTCCTCAGAGCGTGGGGATTTTGGGTGGCAAACCAGGTGCCTCAACTTACATAGTTGGTGTTCAAGAAGACAAAGGTTTCTACCTTGATCCGCATGAAGTTCAACAGGTGGTCACAGTCAACAAGGAAACACCAGATGTTGACACATCCTCCTATCATTGCAATGTCCTTCGTTATGTTCCTTTGGAATCACTCGACCCATCTCTAGCTCTAGGATTCTATTGCCGCGACAAAGATGATTTCGACGATTTCTGTCTCCGAGCATTGAAACTAGCTGAGGAATCAAACGGTGCTCCATTGTTCACAGTGACTCAAACCCACACAGCGATAAACCAAAGCAACTACGGGTTTGCGGATGACGACAGCGAGGATGAACGTGAAGATGACTGGCAAATGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000422 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006497 GO:0006501 GO:0006508 GO:0006605 GO:0006612 GO:0006807 GO:0006810 GO:0006886 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008104 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009058 GO:0009059 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0016236 GO:0016787 GO:0018410 GO:0019538 GO:0022411 GO:0022607 GO:0033036 GO:0034613 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042886 GO:0043170 GO:0043412 GO:0043687 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051697 GO:0061726 GO:0061919 GO:0070011 GO:0070727 GO:0070925 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072657 GO:0090150 GO:0140096 GO:1901564 GO:1901566 GO:1901576 GO:1903008 GO:1905037

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 map04136 map04138 map04140

Pfam Domains

Protein Families

Peptidase_C54

Protein Analysis

467

Amino Acids

51.53

Weight (kDa)

5.13

Isoelectric Point (pI)

46.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C54	PF03416	138 - 419	7e-90	Peptidase C54 catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004973)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44140 AT2G44140 AT2G44140 AT2G44140 AT2G44140 AT3G59950 AT3G59950 AT3G59950 AT3G59950 AT3G59950
fragaria_vesca	FvH4_2g06800
malus_domestica	MD00G1055200.v1.1 MD07G1000400.v1.1
prunus_persica	Prupe.2G000200_v2.0.a1 Prupe.2G000200_v2.0.a1 Prupe.2G000200_v2.0.a1 Prupe.2G000200_v2.0.a1 Prupe.2G000200_v2.0.a1
pyrus_communis	pycom07g00040 pycom1315g00010
rosa_chinensis	RchiOBHm_Chr6g0259021
rosa_laevigata	RLG00000014563
rosa_multiflora	Rmu_ssc0000050.1_g000115
rosa_roxburghii	Rroxscaffold_7G00206260
rosa_rugosa	Rorug05G0584900
rosa_samantha	Rh6AG101300 Rh6BG093400 Rh6CG090800 Rh6DG084700
rosa_wichuraiana	Rw6G008810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	671
AccB1I	GGYRCC	1 cut(s)	1040
AccB7I	CCANNNNNTGG	1 cut(s)	562
AccII	CGCG	1 cut(s)	1230
AciI	CCGC	4 cut(s)	365, 1094, 1228, 1355
AclWI	GGATC	1 cut(s)	1085
AcsI	RAATTY	1 cut(s)	890
AcuI	CTGAAG	1 cut(s)	630
AfaI	GTAC	1 cut(s)	974
AfiI	CCNNNNNNNGG	1 cut(s)	562
AflIII	ACRYGT	1 cut(s)	135
AgeI	ACCGGT	1 cut(s)	305
AgsI	TTSAA	5 cut(s)	183, 464, 1067, 1106, 1270
AhlI	ACTAGT	1 cut(s)	323
AjnI	CCWGG	3 cut(s)	276, 968, 1036
AluBI	AGCT	5 cut(s)	592, 650, 677, 1211, 1277
AluI	AGCT	5 cut(s)	592, 650, 677, 1211, 1277
Alw21I	GWGCWC	2 cut(s)	320, 1297
Alw26I	GTCTC	5 cut(s)	250, 468, 608, 698, 1262
AlwI	GGATC	1 cut(s)	1085
AlwNI	CAGNNNCTG	1 cut(s)	92
AoxI	GGCC	1 cut(s)	293
ApeKI	GCWGC	3 cut(s)	407, 698, 822
ApoI	RAATTY	1 cut(s)	890
ArsI	GACNNNNNNTTYG	2 cut(s)	890, 922
AsiGI	ACCGGT	1 cut(s)	305
AspS9I	GGNCC	4 cut(s)	95, 293, 303, 716
AsuHPI	GGTGA	1 cut(s)	644
AsuII	TTCGAA	1 cut(s)	517
AvaII	GGWCC	3 cut(s)	95, 303, 716
BanI	GGYRCC	1 cut(s)	1040
BanII	GRGCYC	1 cut(s)	850
BbsI	GAAGAC	4 cut(s)	138, 171, 302, 1077
Bbv12I	GWGCWC	2 cut(s)	320, 1297
BbvCI	CCTCAGC	1 cut(s)	1278
BbvI	GCAGC	3 cut(s)	394, 685, 834
BccI	CCATC	4 cut(s)	665, 824, 988, 1210
BciT130I	CCWGG	3 cut(s)	278, 970, 1038
BcoDI	GTCTC	5 cut(s)	250, 468, 608, 698, 1262
BcuI	ACTAGT	1 cut(s)	323
BfaI	CTAG	8 cut(s)	99, 255, 324, 419, 887, 1208, 1214, 1274
BisI	GCNGC	4 cut(s)	408, 699, 823, 1228
BlsI	GCNGC	4 cut(s)	409, 700, 824, 1229
Bme1390I	CCNGG	3 cut(s)	278, 970, 1038
Bme18I	GGWCC	3 cut(s)	95, 303, 716
BmgT120I	GGNCC	4 cut(s)	95, 293, 303, 716
BmiI	GGNNCC	4 cut(s)	624, 849, 936, 1042
BmrFI	CCNGG	3 cut(s)	278, 970, 1038
BmrI	ACTGGG	1 cut(s)	511
BmsI	GCATC	2 cut(s)	519, 859
BmuI	ACTGGG	1 cut(s)	511
BpiI	GAAGAC	4 cut(s)	138, 171, 302, 1077
BpmI	CTGGAG	1 cut(s)	699
Bpu10I	CCTNAGC	2 cut(s)	540, 1278
Bpu14I	TTCGAA	1 cut(s)	517
BsaI	GGTCTC	2 cut(s)	608, 698
BsaJI	CCNNGG	2 cut(s)	618, 968
BsaWI	WCCGGW	1 cut(s)	305
BsaXI	ACNNNNNCTCC	2 cut(s)	1136, 1166
Bsc4I	CCNNNNNNNGG	1 cut(s)	562
Bse118I	RCCGGY	1 cut(s)	305
Bse1I	ACTGG	4 cut(s)	397, 506, 945, 1394
Bse3DI	GCAATG	3 cut(s)	410, 1159, 1171
BseBI	CCWGG	3 cut(s)	278, 970, 1038
BseDI	CCNNGG	2 cut(s)	618, 968
BseGI	GGATG	6 cut(s)	373, 428, 657, 1148, 1363, 1378
BseLI	CCNNNNNNNGG	1 cut(s)	562
BseMI	GCAATG	3 cut(s)	410, 1159, 1171
BseMII	CTCAG	7 cut(s)	168, 390, 554, 579, 900, 1022, 1269
BseNI	ACTGG	4 cut(s)	397, 506, 945, 1394
BseXI	GCAGC	3 cut(s)	394, 685, 834
BseYI	CCCAGC	2 cut(s)	562, 701
Bsh1236I	CGCG	1 cut(s)	1230
BshFI	GGCC	1 cut(s)	295
BshNI	GGYRCC	1 cut(s)	1040
BshTI	ACCGGT	1 cut(s)	305
BsiHKAI	GWGCWC	2 cut(s)	320, 1297
BsiSI	CCGG	1 cut(s)	306
BslI	CCNNNNNNNGG	1 cut(s)	562
BsmAI	GTCTC	5 cut(s)	250, 468, 608, 698, 1262
BsnI	GGCC	1 cut(s)	295
Bso31I	GGTCTC	2 cut(s)	608, 698
Bsp119I	TTCGAA	1 cut(s)	517
Bsp1286I	GDGCHC	3 cut(s)	320, 850, 1297
Bsp143I	GATC	1 cut(s)	1090
BspACI	CCGC	4 cut(s)	365, 1094, 1228, 1355
BspANI	GGCC	1 cut(s)	295
BspCNI	CTCAG	7 cut(s)	167, 389, 553, 580, 901, 1021, 1270
BspFNI	CGCG	1 cut(s)	1230
BspLI	GGNNCC	4 cut(s)	624, 849, 936, 1042
BspPI	GGATC	1 cut(s)	1085
BspT104I	TTCGAA	1 cut(s)	517
BspT107I	GGYRCC	1 cut(s)	1040
BspTNI	GGTCTC	2 cut(s)	608, 698
BsrDI	GCAATG	3 cut(s)	410, 1159, 1171
BsrFI	RCCGGY	1 cut(s)	305
BsrI	ACTGG	4 cut(s)	397, 506, 945, 1394
BssAI	RCCGGY	1 cut(s)	305
BssECI	CCNNGG	2 cut(s)	618, 968
BssMI	GATC	1 cut(s)	1090
BssT1I	CCWWGG	1 cut(s)	618
Bst2UI	CCWGG	3 cut(s)	278, 970, 1038
Bst4CI	ACNGT	8 cut(s)	168, 400, 720, 906, 959, 1120, 1292, 1309
Bst6I	CTCTTC	1 cut(s)	755
BstBI	TTCGAA	1 cut(s)	517
BstC8I	GCNNGC	1 cut(s)	754
BstDEI	CTNAG	9 cut(s)	154, 376, 540, 579, 588, 610, 909, 1008, 1278
BstF5I	GGATG	6 cut(s)	373, 428, 657, 1148, 1363, 1378
BstFNI	CGCG	1 cut(s)	1230
BstKTI	GATC	1 cut(s)	1093
BstMAI	GTCTC	5 cut(s)	250, 468, 608, 698, 1262
BstMBI	GATC	1 cut(s)	1090
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstNI	CCWGG	3 cut(s)	278, 970, 1038
BstSCI	CCNGG	3 cut(s)	276, 968, 1036
BstUI	CGCG	1 cut(s)	1230
BstV1I	GCAGC	3 cut(s)	394, 685, 834
BstV2I	GAAGAC	4 cut(s)	138, 171, 302, 1077
BsuRI	GGCC	1 cut(s)	295
BtgZI	GCGATG	1 cut(s)	507
BtsCI	GGATG	6 cut(s)	373, 428, 657, 1148, 1363, 1378
BtsIMutI	CAGTG	4 cut(s)	396, 938, 964, 1314
Cac8I	GCNNGC	1 cut(s)	754
CaiI	CAGNNNCTG	1 cut(s)	92
Cfr10I	RCCGGY	1 cut(s)	305
Cfr13I	GGNCC	4 cut(s)	95, 293, 303, 716
CseI	GACGC	2 cut(s)	672, 799
CsiI	ACCWGGT	1 cut(s)	1036
Csp6I	GTAC	1 cut(s)	973
CspAI	ACCGGT	1 cut(s)	305
CviAII	CATG	4 cut(s)	65, 511, 708, 1097
CviQI	GTAC	1 cut(s)	973
DdeI	CTNAG	9 cut(s)	154, 376, 540, 579, 588, 610, 909, 1008, 1278
DpnI	GATC	1 cut(s)	1092
DpnII	GATC	1 cut(s)	1090
Eam1104I	CTCTTC	1 cut(s)	755
EarI	CTCTTC	1 cut(s)	755
Eco130I	CCWWGG	1 cut(s)	618
Eco24I	GRGCYC	1 cut(s)	850
Eco31I	GGTCTC	2 cut(s)	608, 698
Eco47I	GGWCC	3 cut(s)	95, 303, 716
Eco57I	CTGAAG	1 cut(s)	630
EcoO109I	RGGNCCY	1 cut(s)	293
EcoRI	GAATTC	1 cut(s)	890
EcoRII	CCWGG	3 cut(s)	276, 968, 1036
EcoT14I	CCWWGG	1 cut(s)	618
EcoT38I	GRGCYC	1 cut(s)	850
ErhI	CCWWGG	1 cut(s)	618
FaeI	CATG	4 cut(s)	68, 514, 711, 1100
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FatI	CATG	4 cut(s)	64, 510, 707, 1096
Fnu4HI	GCNGC	4 cut(s)	408, 699, 823, 1228
FokI	GGATG	6 cut(s)	380, 415, 644, 1135, 1370, 1385
FriOI	GRGCYC	1 cut(s)	850
Fsp4HI	GCNGC	4 cut(s)	408, 699, 823, 1228
FspBI	CTAG	8 cut(s)	99, 255, 324, 419, 887, 1208, 1214, 1274
GluI	GCNGC	4 cut(s)	408, 699, 823, 1228
GsaI	CCCAGC	2 cut(s)	566, 705
GsuI	CTGGAG	1 cut(s)	699
HaeIII	GGCC	1 cut(s)	295
HapII	CCGG	1 cut(s)	306
HgaI	GACGC	2 cut(s)	672, 799
Hin1II	CATG	4 cut(s)	68, 514, 711, 1100
HincII	GTYRAC	2 cut(s)	1123, 1144
HindII	GTYRAC	2 cut(s)	1123, 1144
HpaII	CCGG	1 cut(s)	306
HphI	GGTGA	1 cut(s)	644
Hpy166II	GTNNAC	7 cut(s)	120, 141, 499, 915, 1123, 1144, 1305
Hpy188I	TCNGA	8 cut(s)	88, 315, 589, 640, 910, 1011, 1262, 1403
Hpy188III	TCNNGA	4 cut(s)	93, 596, 887, 1067
Hpy8I	GTNNAC	7 cut(s)	120, 141, 499, 915, 1123, 1144, 1305
Hpy99I	CGWCG	1 cut(s)	1250
HpyAV	CCTTC	2 cut(s)	654, 1181
HpyCH4III	ACNGT	8 cut(s)	168, 400, 720, 906, 959, 1120, 1292, 1309
HpyCH4IV	ACGT	4 cut(s)	135, 143, 330, 1378
HpyCH4V	TGCA	6 cut(s)	207, 410, 415, 510, 756, 1164
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
HpyF3I	CTNAG	9 cut(s)	154, 376, 540, 579, 588, 610, 909, 1008, 1278
HpySE526I	ACGT	4 cut(s)	135, 143, 330, 1378
Hsp92II	CATG	4 cut(s)	68, 514, 711, 1100
Kzo9I	GATC	1 cut(s)	1090
LmnI	GCTCC	5 cut(s)	260, 280, 680, 853, 1300
Lsp1109I	GCAGC	3 cut(s)	394, 685, 834
LweI	GCATC	2 cut(s)	519, 859
MabI	ACCWGGT	1 cut(s)	1036
MaeI	CTAG	8 cut(s)	99, 255, 324, 419, 887, 1208, 1214, 1274
MaeII	ACGT	4 cut(s)	135, 143, 330, 1378
MaeIII	GTNAC	3 cut(s)	326, 1114, 1309
MalI	GATC	1 cut(s)	1092
MboI	GATC	1 cut(s)	1090
MhlI	GDGCHC	3 cut(s)	320, 850, 1297
MluCI	AATT	3 cut(s)	264, 852, 890
MlyI	GAGTC	4 cut(s)	185, 252, 752, 1306
MmeI	TCCRAC	1 cut(s)	203
MnlI	CCTC	9 cut(s)	39, 163, 561, 833, 1017, 1054, 1162, 1273, 1363
MslI	CAYNNNNRTG	2 cut(s)	751, 1164
MspI	CCGG	1 cut(s)	306
MspR9I	CCNGG	3 cut(s)	278, 970, 1038
MvaI	CCWGG	3 cut(s)	278, 970, 1038
MvnI	CGCG	1 cut(s)	1230
MwoI	GCNNNNNNNGC	1 cut(s)	260
NdeII	GATC	1 cut(s)	1090
NlaIII	CATG	4 cut(s)	68, 514, 711, 1100
NlaIV	GGNNCC	4 cut(s)	624, 849, 936, 1042
NmuCI	GTSAC	3 cut(s)	326, 1114, 1309
NspV	TTCGAA	1 cut(s)	517
PfeI	GAWTC	9 cut(s)	89, 273, 514, 635, 776, 964, 1190, 1218, 1283
PflMI	CCANNNNNTGG	1 cut(s)	562
PfoI	TCCNGGA	1 cut(s)	276
PinAI	ACCGGT	1 cut(s)	305
PkrI	GCNGC	4 cut(s)	409, 700, 824, 1229
PleI	GAGTC	4 cut(s)	184, 251, 751, 1306
PpsI	GAGTC	4 cut(s)	184, 251, 751, 1306
PsiI	TTATAA	1 cut(s)	671
Psp6I	CCWGG	3 cut(s)	276, 968, 1036
PspFI	CCCAGC	2 cut(s)	562, 701
PspGI	CCWGG	3 cut(s)	276, 968, 1036
PspN4I	GGNNCC	4 cut(s)	624, 849, 936, 1042
PspPI	GGNCC	4 cut(s)	95, 293, 303, 716
PstNI	CAGNNNCTG	1 cut(s)	92
RsaI	GTAC	1 cut(s)	974
RsaNI	GTAC	1 cut(s)	973
RseI	CAYNNNNRTG	2 cut(s)	751, 1164
SatI	GCNGC	4 cut(s)	408, 699, 823, 1228
Sau3AI	GATC	1 cut(s)	1090
Sau96I	GGNCC	4 cut(s)	95, 293, 303, 716
SchI	GAGTC	4 cut(s)	185, 252, 752, 1306
ScrFI	CCNGG	3 cut(s)	278, 970, 1038
SduI	GDGCHC	3 cut(s)	320, 850, 1297
SexAI	ACCWGGT	1 cut(s)	1036
SfaNI	GCATC	2 cut(s)	519, 859
SfuI	TTCGAA	1 cut(s)	517
SinI	GGWCC	3 cut(s)	95, 303, 716
SmiMI	CAYNNNNRTG	2 cut(s)	751, 1164
SpeI	ACTAGT	1 cut(s)	323
Sse9I	AATT	3 cut(s)	264, 852, 890
SsiI	CCGC	4 cut(s)	365, 1094, 1228, 1355
SspMI	CTAG	8 cut(s)	99, 255, 324, 419, 887, 1208, 1214, 1274
StyD4I	CCNGG	3 cut(s)	276, 968, 1036
StyI	CCWWGG	1 cut(s)	618
TaaI	ACNGT	8 cut(s)	168, 400, 720, 906, 959, 1120, 1292, 1309
TaiI	ACGT	4 cut(s)	138, 146, 333, 1381
TaqI	TCGA	4 cut(s)	517, 733, 1197, 1245
TasI	AATT	3 cut(s)	264, 852, 890
TauI	GCSGC	1 cut(s)	1230
TfiI	GAWTC	9 cut(s)	89, 273, 514, 635, 776, 964, 1190, 1218, 1283
TscAI	CASTG	4 cut(s)	403, 945, 964, 1314
TseFI	GTSAC	3 cut(s)	326, 1114, 1309
TseI	GCWGC	3 cut(s)	407, 698, 822
Tsp45I	GTSAC	3 cut(s)	326, 1114, 1309
TspDTI	ATGAA	6 cut(s)	17, 33, 417, 797, 1113, 1389
TspRI	CASTG	4 cut(s)	403, 945, 964, 1314
Van91I	CCANNNNNTGG	1 cut(s)	562
VpaK11BI	GGWCC	3 cut(s)	95, 303, 716
XapI	RAATTY	1 cut(s)	890
XbaI	TCTAGA	1 cut(s)	886
XspI	CTAG	8 cut(s)	99, 255, 324, 419, 887, 1208, 1214, 1274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.