Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004973

Physical Location & Seq

Genomic Coordinates Forward (+)

78175398 .. 78176731

Gene Structure 1334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0584900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGGTACTTTAATTGGGCATGTAGTACCAGGCTTTGGTTTTGTTCTAATTGGATTATGGCACCTCTTCAACCACATCAAGCTCCATCTTCAACATCCCAACTCCTACACAGCACCAACATGGTTTCCCGCCTCCCAGTTCAAGTACTCGGAGCTCTTGTTGATCATCTTAGGTTCATCAGCCTCCATTGCCATGGAACTCTTCATCAGCCCCGAAAAACACCAACCGTTCGACGACGACGGGACCATCCCTTCAAACCATCTCCACAACTTCGAGCACGCCACAATCTCCATGACTTTCTTGGTCTACGCTGCCCTTGCTATCGTTCTCGACAAATTAGCCCCTAGAGTTCAGCATGGTCTGACCCAACTCCTCGGAGCCATAGCCTTTGGTCAGCAACTGCTTCTCTTTCACCTTCACTCTACTGACCACATGGGACCTGAAGGCCAATTCCACTGGCTTCTTCAGCTTGTGATTCTTGTCTCCTTGACCACAACCCTAATGGGAATTGGTTTTCCCAAGAGCTTCTTGGTCAGCTTTGTGAGGTCACTCAGCATATTCTTCCAAGGTCTCTGGTTTATAGTCATGGGGGTCATGCTTTGGACACCTGGGTTGATTTCCAAAGGTTGTTTCCTAAATGATGAAGACGGTCACAAAGTGGTTAGGTGCCAGAGCGAGGAGGCACGTCACAGAGCCCTGTCCTTGGTGAATCTTCAGTTCAGTTGGTTCTTGATTGTAGTTGCCGTTTTTGGGGTGGCTTTCTATTTGGTTTTGATTAAGTTCTACGGTGAAAAGGTGGAGTACTTTACTCTGGGAAGTGACCGTGAATATGAAGAAGATGATGATGTGGAATCTCAGAAGAAAAGTAATGTTGGAGAGTCAACGAGTTTTGTGGATCATATGGGAAAAACAGCCTTTGCGCCAATAGACATGGAAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000422 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006497 GO:0006501 GO:0006508 GO:0006605 GO:0006612 GO:0006807 GO:0006810 GO:0006886 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008104 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009058 GO:0009059 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0016236 GO:0016787 GO:0018410 GO:0019538 GO:0022411 GO:0022607 GO:0033036 GO:0034613 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042886 GO:0043170 GO:0043412 GO:0043687 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051697 GO:0061726 GO:0061919 GO:0070011 GO:0070727 GO:0070925 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072657 GO:0090150 GO:0140096 GO:1901564 GO:1901566 GO:1901576 GO:1903008 GO:1905037

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 map04136 map04138 map04140

Pfam Domains

Protein Families

Peptidase_C54

Protein Analysis

313

Amino Acids

35.26

Weight (kDa)

5.89

Isoelectric Point (pI)

33.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF716	PF04819	120 - 256	5.8e-54	Family of unknown function (DUF716)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004973)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44140 AT2G44140 AT2G44140 AT2G44140 AT2G44140 AT3G59950 AT3G59950 AT3G59950 AT3G59950 AT3G59950
fragaria_vesca	FvH4_2g06800
malus_domestica	MD00G1055200.v1.1 MD07G1000400.v1.1
prunus_persica	Prupe.2G000200_v2.0.a1 Prupe.2G000200_v2.0.a1 Prupe.2G000200_v2.0.a1 Prupe.2G000200_v2.0.a1 Prupe.2G000200_v2.0.a1
pyrus_communis	pycom07g00040 pycom1315g00010
rosa_chinensis	RchiOBHm_Chr6g0259021
rosa_laevigata	RLG00000014563
rosa_multiflora	Rmu_ssc0000050.1_g000115
rosa_roxburghii	Rroxscaffold_7G00206260
rosa_rugosa	Rorug05G0584900
rosa_samantha	Rh6AG101300 Rh6BG093400 Rh6CG090800 Rh6DG084700
rosa_wichuraiana	Rw6G008810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	60, 666
AccB7I	CCANNNNNTGG	1 cut(s)	35
AccI	GTMKAC	1 cut(s)	306
AciI	CCGC	1 cut(s)	129
AclWI	GGATC	1 cut(s)	903
AcuI	CTGAAG	3 cut(s)	449, 462, 698
AdeI	CACNNNGTG	1 cut(s)	658
AfaI	GTAC	4 cut(s)	7, 27, 146, 803
AfiI	CCNNNNNNNGG	4 cut(s)	35, 676, 703, 750
AgsI	TTSAA	4 cut(s)	70, 92, 142, 255
AjiI	CACGTC	1 cut(s)	686
AjnI	CCWGG	2 cut(s)	28, 607
AjuI	GAANNNNNNNTTGG	2 cut(s)	614, 646
AluBI	AGCT	5 cut(s)	82, 154, 469, 525, 537
AluI	AGCT	5 cut(s)	82, 154, 469, 525, 537
Alw21I	GWGCWC	2 cut(s)	156, 279
Alw26I	GTCTC	2 cut(s)	487, 575
AlwI	GGATC	1 cut(s)	903
AlwNI	CAGNNNCTG	1 cut(s)	400
AoxI	GGCC	1 cut(s)	445
ApeKI	GCWGC	1 cut(s)	311
AspLEI	GCGC	1 cut(s)	922
AspS9I	GGNCC	2 cut(s)	243, 437
AsuHPI	GGTGA	3 cut(s)	404, 718, 800
AvaII	GGWCC	2 cut(s)	243, 437
BanI	GGYRCC	2 cut(s)	60, 666
BanII	GRGCYC	2 cut(s)	156, 697
BbsI	GAAGAC	1 cut(s)	651
Bbv12I	GWGCWC	2 cut(s)	156, 279
BbvI	GCAGC	1 cut(s)	298
BccI	CCATC	3 cut(s)	93, 254, 267
BceAI	ACGGC	1 cut(s)	728
BciT130I	CCWGG	2 cut(s)	30, 609
BclI	TGATCA	1 cut(s)	162
BcoDI	GTCTC	2 cut(s)	487, 575
BfaI	CTAG	1 cut(s)	345
BisI	GCNGC	1 cut(s)	312
BlsI	GCNGC	1 cut(s)	313
BmcAI	AGTACT	2 cut(s)	146, 803
Bme1390I	CCNGG	2 cut(s)	30, 609
Bme18I	GGWCC	2 cut(s)	243, 437
BmgBI	CACGTC	1 cut(s)	686
BmgT120I	GGNCC	2 cut(s)	243, 437
BmiI	GGNNCC	5 cut(s)	62, 244, 379, 438, 668
BmrFI	CCNGG	2 cut(s)	30, 609
BmrI	ACTGGG	1 cut(s)	130
BmuI	ACTGGG	1 cut(s)	130
BpiI	GAAGAC	1 cut(s)	651
BsaI	GGTCTC	1 cut(s)	575
BsaJI	CCNNGG	5 cut(s)	192, 373, 565, 608, 702
BsaXI	ACNNNNNCTCC	2 cut(s)	143, 173
Bsc4I	CCNNNNNNNGG	4 cut(s)	35, 676, 703, 750
Bse1I	ACTGG	2 cut(s)	136, 461
Bse3DI	GCAATG	1 cut(s)	186
BseBI	CCWGG	2 cut(s)	30, 609
BseDI	CCNNGG	5 cut(s)	192, 373, 565, 608, 702
BseGI	GGATG	2 cut(s)	94, 246
BseLI	CCNNNNNNNGG	4 cut(s)	35, 676, 703, 750
BseMI	GCAATG	1 cut(s)	186
BseMII	CTCAG	2 cut(s)	565, 869
BseNI	ACTGG	2 cut(s)	136, 461
BseRI	GAGGAG	2 cut(s)	362, 692
BseXI	GCAGC	1 cut(s)	298
BshFI	GGCC	1 cut(s)	447
BshNI	GGYRCC	2 cut(s)	60, 666
BsiHKAI	GWGCWC	2 cut(s)	156, 279
BslFI	GGGAC	2 cut(s)	256, 450
BslI	CCNNNNNNNGG	4 cut(s)	35, 676, 703, 750
BsmAI	GTCTC	2 cut(s)	487, 575
BsmFI	GGGAC	2 cut(s)	256, 450
BsnI	GGCC	1 cut(s)	447
Bso31I	GGTCTC	1 cut(s)	575
Bsp1286I	GDGCHC	3 cut(s)	156, 279, 697
Bsp143I	GATC	2 cut(s)	162, 895
Bsp19I	CCATGG	1 cut(s)	192
BspACI	CCGC	1 cut(s)	129
BspANI	GGCC	1 cut(s)	447
BspCNI	CTCAG	2 cut(s)	564, 868
BspLI	GGNNCC	5 cut(s)	62, 244, 379, 438, 668
BspPI	GGATC	1 cut(s)	903
BspT107I	GGYRCC	2 cut(s)	60, 666
BspTNI	GGTCTC	1 cut(s)	575
BsrDI	GCAATG	1 cut(s)	186
BsrI	ACTGG	2 cut(s)	136, 461
BssECI	CCNNGG	5 cut(s)	192, 373, 565, 608, 702
BssMI	GATC	2 cut(s)	162, 895
BssT1I	CCWWGG	3 cut(s)	192, 565, 702
Bst2UI	CCWGG	2 cut(s)	30, 609
Bst4CI	ACNGT	4 cut(s)	228, 650, 788, 824
Bst6I	CTCTTC	2 cut(s)	71, 206
BstC8I	GCNNGC	1 cut(s)	279
BstDEI	CTNAG	3 cut(s)	169, 551, 855
BstDSI	CCRYGG	1 cut(s)	192
BstF5I	GGATG	2 cut(s)	94, 246
BstHHI	GCGC	1 cut(s)	922
BstKTI	GATC	2 cut(s)	165, 898
BstMAI	GTCTC	2 cut(s)	487, 575
BstMBI	GATC	2 cut(s)	162, 895
BstMWI	GCNNNNNNNGC	3 cut(s)	188, 317, 466
BstNI	CCWGG	2 cut(s)	30, 609
BstNSI	RCATGY	1 cut(s)	23
BstSCI	CCNGG	2 cut(s)	28, 607
BstV1I	GCAGC	1 cut(s)	298
BstV2I	GAAGAC	1 cut(s)	651
BstXI	CCANNNNNNTGG	1 cut(s)	193
BsuRI	GGCC	1 cut(s)	447
BtgI	CCRYGG	1 cut(s)	192
BtrI	CACGTC	1 cut(s)	686
BtsCI	GGATG	2 cut(s)	94, 246
BtsIMutI	CAGTG	1 cut(s)	454
Cac8I	GCNNGC	1 cut(s)	279
CaiI	CAGNNNCTG	1 cut(s)	400
CfoI	GCGC	1 cut(s)	922
Cfr13I	GGNCC	2 cut(s)	243, 437
Csp6I	GTAC	4 cut(s)	6, 26, 145, 802
CviAII	CATG	9 cut(s)	20, 120, 193, 292, 356, 433, 586, 595, 931
CviQI	GTAC	4 cut(s)	6, 26, 145, 802
DdeI	CTNAG	3 cut(s)	169, 551, 855
DpnI	GATC	2 cut(s)	164, 897
DpnII	GATC	2 cut(s)	162, 895
DraIII	CACNNNGTG	1 cut(s)	658
Eam1104I	CTCTTC	2 cut(s)	71, 206
EarI	CTCTTC	2 cut(s)	71, 206
Ecl136II	GAGCTC	1 cut(s)	154
Eco130I	CCWWGG	3 cut(s)	192, 565, 702
Eco24I	GRGCYC	2 cut(s)	156, 697
Eco31I	GGTCTC	1 cut(s)	575
Eco47I	GGWCC	2 cut(s)	243, 437
Eco53kI	GAGCTC	1 cut(s)	154
Eco57I	CTGAAG	3 cut(s)	449, 462, 698
EcoICRI	GAGCTC	1 cut(s)	154
EcoO109I	RGGNCCY	1 cut(s)	437
EcoRII	CCWGG	2 cut(s)	28, 607
EcoT14I	CCWWGG	3 cut(s)	192, 565, 702
EcoT38I	GRGCYC	2 cut(s)	156, 697
ErhI	CCWWGG	3 cut(s)	192, 565, 702
FaeI	CATG	9 cut(s)	23, 123, 196, 295, 359, 436, 589, 598, 934
FalI	AAGNNNNNCTT	2 cut(s)	512, 544
FaqI	GGGAC	2 cut(s)	256, 450
FatI	CATG	9 cut(s)	19, 119, 192, 291, 355, 432, 585, 594, 930
FauI	CCCGC	1 cut(s)	136
FauNDI	CATATG	1 cut(s)	900
FbaI	TGATCA	1 cut(s)	162
FblI	GTMKAC	1 cut(s)	306
Fnu4HI	GCNGC	1 cut(s)	312
FokI	GGATG	2 cut(s)	81, 233
FriOI	GRGCYC	2 cut(s)	156, 697
Fsp4HI	GCNGC	1 cut(s)	312
FspBI	CTAG	1 cut(s)	345
GlaI	GCGC	1 cut(s)	921
GluI	GCNGC	1 cut(s)	312
HaeIII	GGCC	1 cut(s)	447
HhaI	GCGC	1 cut(s)	922
Hin1II	CATG	9 cut(s)	23, 123, 196, 295, 359, 436, 589, 598, 934
Hin6I	GCGC	1 cut(s)	920
HinP1I	GCGC	1 cut(s)	920
HincII	GTYRAC	1 cut(s)	882
HindII	GTYRAC	1 cut(s)	882
HinfI	GANTC	4 cut(s)	475, 709, 851, 878
HphI	GGTGA	3 cut(s)	404, 718, 800
Hpy166II	GTNNAC	2 cut(s)	307, 882
Hpy188I	TCNGA	4 cut(s)	151, 363, 377, 858
Hpy188III	TCNNGA	2 cut(s)	329, 730
Hpy8I	GTNNAC	2 cut(s)	307, 882
Hpy99I	CGWCG	3 cut(s)	236, 239, 242
HpyAV	CCTTC	3 cut(s)	261, 425, 437
HpyCH4III	ACNGT	4 cut(s)	228, 650, 788, 824
HpyCH4IV	ACGT	1 cut(s)	685
HpyF10VI	GCNNNNNNNGC	3 cut(s)	188, 317, 466
HpyF3I	CTNAG	3 cut(s)	169, 551, 855
HpySE526I	ACGT	1 cut(s)	685
Hsp92II	CATG	9 cut(s)	23, 123, 196, 295, 359, 436, 589, 598, 934
HspAI	GCGC	1 cut(s)	920
Ksp22I	TGATCA	1 cut(s)	162
Kzo9I	GATC	2 cut(s)	162, 895
LmnI	GCTCC	3 cut(s)	87, 151, 377
Lsp1109I	GCAGC	1 cut(s)	298
MaeI	CTAG	1 cut(s)	345
MaeII	ACGT	1 cut(s)	685
MaeIII	GTNAC	4 cut(s)	546, 650, 686, 818
MalI	GATC	2 cut(s)	164, 897
MboI	GATC	2 cut(s)	162, 895
MhlI	GDGCHC	3 cut(s)	156, 279, 697
MluCI	AATT	5 cut(s)	12, 48, 335, 449, 507
MlyI	GAGTC	1 cut(s)	887
MmeI	TCCRAC	1 cut(s)	853
MnlI	CCTC	7 cut(s)	74, 142, 193, 383, 537, 670, 673
MseI	TTAA	2 cut(s)	11, 777
MslI	CAYNNNNRTG	2 cut(s)	118, 191
MspR9I	CCNGG	2 cut(s)	30, 609
MvaI	CCWGG	2 cut(s)	30, 609
MwoI	GCNNNNNNNGC	3 cut(s)	188, 317, 466
NcoI	CCATGG	1 cut(s)	192
NdeI	CATATG	1 cut(s)	900
NdeII	GATC	2 cut(s)	162, 895
NlaIII	CATG	9 cut(s)	23, 123, 196, 295, 359, 436, 589, 598, 934
NlaIV	GGNNCC	5 cut(s)	62, 244, 379, 438, 668
NmuCI	GTSAC	4 cut(s)	546, 650, 686, 818
NspI	RCATGY	1 cut(s)	23
PfeI	GAWTC	3 cut(s)	475, 709, 851
PflMI	CCANNNNNTGG	1 cut(s)	35
PkrI	GCNGC	1 cut(s)	313
PleI	GAGTC	1 cut(s)	886
PpsI	GAGTC	1 cut(s)	886
PpuMI	RGGWCCY	1 cut(s)	437
Psp124BI	GAGCTC	1 cut(s)	156
Psp5II	RGGWCCY	1 cut(s)	437
Psp6I	CCWGG	2 cut(s)	28, 607
PspGI	CCWGG	2 cut(s)	28, 607
PspN4I	GGNNCC	5 cut(s)	62, 244, 379, 438, 668
PspPI	GGNCC	2 cut(s)	243, 437
PspPPI	RGGWCCY	1 cut(s)	437
PstNI	CAGNNNCTG	1 cut(s)	400
RsaI	GTAC	4 cut(s)	7, 27, 146, 803
RsaNI	GTAC	4 cut(s)	6, 26, 145, 802
RseI	CAYNNNNRTG	2 cut(s)	118, 191
SacI	GAGCTC	1 cut(s)	156
SaqAI	TTAA	2 cut(s)	11, 777
SatI	GCNGC	1 cut(s)	312
Sau3AI	GATC	2 cut(s)	162, 895
Sau96I	GGNCC	2 cut(s)	243, 437
ScaI	AGTACT	2 cut(s)	146, 803
SchI	GAGTC	1 cut(s)	887
ScrFI	CCNGG	2 cut(s)	30, 609
SduI	GDGCHC	3 cut(s)	156, 279, 697
SinI	GGWCC	2 cut(s)	243, 437
SmiMI	CAYNNNNRTG	2 cut(s)	118, 191
Sse9I	AATT	5 cut(s)	12, 48, 335, 449, 507
SsiI	CCGC	1 cut(s)	129
SspMI	CTAG	1 cut(s)	345
SstI	GAGCTC	1 cut(s)	156
StyD4I	CCNGG	2 cut(s)	28, 607
StyI	CCWWGG	3 cut(s)	192, 565, 702
TaaI	ACNGT	4 cut(s)	228, 650, 788, 824
TaiI	ACGT	1 cut(s)	688
TaqI	TCGA	3 cut(s)	231, 273, 330
TasI	AATT	5 cut(s)	12, 48, 335, 449, 507
TatI	WGTACW	2 cut(s)	144, 801
TfiI	GAWTC	3 cut(s)	475, 709, 851
Tru1I	TTAA	2 cut(s)	11, 777
Tru9I	TTAA	2 cut(s)	11, 777
TscAI	CASTG	1 cut(s)	461
TseFI	GTSAC	4 cut(s)	546, 650, 686, 818
TseI	GCWGC	1 cut(s)	311
Tsp45I	GTSAC	4 cut(s)	546, 650, 686, 818
TspDTI	ATGAA	4 cut(s)	165, 193, 657, 846
TspRI	CASTG	1 cut(s)	461
Van91I	CCANNNNNTGG	1 cut(s)	35
VpaK11BI	GGWCC	2 cut(s)	243, 437
XceI	RCATGY	1 cut(s)	23
XcmI	CCANNNNNNNNNTGG	3 cut(s)	298, 499, 526
XmiI	GTMKAC	1 cut(s)	306
XspI	CTAG	1 cut(s)	345
ZrmI	AGTACT	2 cut(s)	146, 803

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.