FvH4_2g06800

cysteine protease

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
5628224 .. 5629459
1236 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g06800.t1

Sequence Viewer

Length: 1236 bp
ATGGATGGGTCTTGGACTGCAGCTGTGATGCGCCGAATCCACGAGCGTGTAGTTGGGTCCAGCCGTGCAGCTCCCATCTCCTCATCCAGTGATGTTTGGCTTCTCGGTGTGTGCTACAATTTCGACGAGTCCGAGTCGTCTCCTTTGGCGTTCGAGCAGGATTTCTCGTCGAGGATCTTGATGACGTATAGGAGAGGATTCGATTTGATAGAGGGTGGAGATTCCAAGTTTACGAGTGATGTGAATTGGGGGTGTATGATTCGGAGCAGCCAGATGCTTGTGGCGCAGGCATTGCTTTTCCACAGGCTGGGAAGATCTTGGAGGCGGCCTGTGGACAAGTCTTGCGGATTGGAACAAGAGTATGTTAAGATCCTGCGGCTGTTTGGTGATTCCGAAGCTGCGGTGTTCTCAATTCATAACTTGATTCAGGCGGGCAAGGGTTATAACCTTGCTGCAGGGTCGTGGGTTGGCCCTTATGCCATGTGCCGGTCTTGGGAGACTCTTGTGTGCAAGCAGAGGGAGGCTGAGGGGGCGGCAGAAGCGGCTCGGGAGCTTGATGATCAGCCACTGCCAATGGCTGTTTACATTGTTTCTGGAGACGAAAATGGGGAGAGAGGCGGTGCTCCGGTTGTGTGTATTGAAGATGCATCTAGACATTGTTTGGAGTTCTCGAGAGGTCGAGTTGATTGGACCCCGATTCTTTTGCTGGTTCCTTTGGTTCTTGGACTCGAAGAACTCAATCCCAGGTACATTCCATCCTTGCGAGCTACATTTACCTTTCCTCAAAGTGTTGGCATCATGGGTGGCAAACCTGGTGTATCCACTTACATTATTGGAGTGCAAGATGAAAATGCTATTTACCTTGATCCGCATCAAGTTCAGCCTGTAATCGATTTGAGTAGGAATGATTCAGAGGTAGTTGATAGTGATGCTACTGCATCTTACCACTGCAATGTTATACGCCACATTCCTTTAGATACGATTGATCCATCCTTGGCGATTGGATTCTATTGCCGTGACAAAGATGATTTTGATGATTTTTGTCTACGAGCTTCGAAACTGGCAGATGAATCAAATGGTGCTCCACTGTTTACTGTGACAGCTGAGACACAAAATGTGTCCAGGCCACCTAGCCAGAGTGGTGAGGGTTTGGGTGATAATGCTGGAGATCAAAACAATGAAGATGTCGATGCAGATGGAAGCGCACATGAAGAAGATGATTGGCAACTCCTTTGA

Protein Analysis

412

Amino Acids

45.27

Weight (kDa)

4.59

Isoelectric Point (pI)

49.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C54 PF03416 50 - 348 6.8e-91 Peptidase C54 catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 444
AccB7I CCANNNNNTGG 1 cut(s) 307
AccI GTMKAC 1 cut(s) 1045
AciI CCGC 9 cut(s) 325, 345, 376, 401, 431, 533, 542, 618, 869
AclWI GGATC 4 cut(s) 182, 364, 860, 980
AfaI GTAC 1 cut(s) 749
AfiI CCNNNNNNNGG 3 cut(s) 307, 486, 493
AgsI TTSAA 1 cut(s) 641
AjnI CCWGG 3 cut(s) 743, 811, 1121
AleI CACNNNNGTG 1 cut(s) 45
AluBI AGCT 7 cut(s) 23, 71, 398, 553, 767, 1052, 1103
AluI AGCT 7 cut(s) 23, 71, 398, 553, 767, 1052, 1103
Alw21I GWGCWC 2 cut(s) 625, 1084
Alw26I GTCTC 4 cut(s) 144, 491, 591, 1100
AlwI GGATC 4 cut(s) 182, 364, 860, 980
AlwNI CAGNNNCTG 1 cut(s) 568
Ama87I CYCGRG 2 cut(s) 546, 670
AoxI GGCC 3 cut(s) 326, 469, 1124
ApeKI GCWGC 5 cut(s) 20, 68, 267, 398, 452
AspLEI GCGC 3 cut(s) 33, 286, 1205
AspS9I GGNCC 3 cut(s) 57, 470, 690
AsuHPI GGTGA 3 cut(s) 398, 1154, 1166
AsuII TTCGAA 1 cut(s) 1055
AvaI CYCGRG 2 cut(s) 546, 670
AvaII GGWCC 2 cut(s) 57, 690
BauI CACGAG 1 cut(s) 41
Bbv12I GWGCWC 2 cut(s) 625, 1084
BbvCI CCTCAGC 1 cut(s) 525
BbvI GCAGC 5 cut(s) 32, 80, 279, 385, 439
BccI CCATC 4 cut(s) 83, 763, 997, 1190
BceAI ACGGC 2 cut(s) 48, 999
BcgI CGANNNNNNTGC 2 cut(s) 685, 719
BciT130I CCWGG 3 cut(s) 745, 813, 1123
BciVI GTATCC 1 cut(s) 829
BclI TGATCA 1 cut(s) 559
BcoDI GTCTC 4 cut(s) 144, 491, 591, 1100
BfaI CTAG 2 cut(s) 651, 1131
BfmI CTRYAG 2 cut(s) 18, 453
BfuI GTATCC 1 cut(s) 829
BglII AGATCT 1 cut(s) 314
BisI GCNGC 9 cut(s) 21, 69, 268, 326, 377, 399, 453, 534, 543
BlsI GCNGC 9 cut(s) 22, 70, 269, 327, 378, 400, 454, 535, 544
Bme1390I CCNGG 3 cut(s) 745, 813, 1123
Bme18I GGWCC 2 cut(s) 57, 690
BmeT110I CYCGRG 2 cut(s) 546, 670
BmgT120I GGNCC 3 cut(s) 57, 470, 690
BmiI GGNNCC 3 cut(s) 58, 692, 711
BmrFI CCNGG 3 cut(s) 745, 813, 1123
BmsI GCATC 9 cut(s) 18, 264, 634, 656, 804, 880, 919, 947, 1180
BpmI CTGGAG 2 cut(s) 615, 1185
Bpu10I CCTNAGC 1 cut(s) 525
Bpu14I TTCGAA 1 cut(s) 1055
Bsa29I ATCGAT 1 cut(s) 891
BsaBI GATNNNNATC 1 cut(s) 870
BsaJI CCNNGG 2 cut(s) 743, 993
BsaWI WCCGGW 1 cut(s) 625
Bsc4I CCNNNNNNNGG 3 cut(s) 307, 486, 493
Bse118I RCCGGY 1 cut(s) 486
Bse1I ACTGG 2 cut(s) 87, 1065
Bse3DI GCAATG 2 cut(s) 290, 958
Bse8I GATNNNNATC 1 cut(s) 870
BseBI CCWGG 3 cut(s) 745, 813, 1123
BseCI ATCGAT 1 cut(s) 891
BseDI CCNNGG 2 cut(s) 743, 993
BseGI GGATG 4 cut(s) 10, 83, 755, 989
BseJI GATNNNNATC 1 cut(s) 870
BseLI CCNNNNNNNGG 3 cut(s) 307, 486, 493
BseMI GCAATG 2 cut(s) 290, 958
BseMII CTCAG 2 cut(s) 516, 1095
BseNI ACTGG 2 cut(s) 87, 1065
BseRI GAGGAG 1 cut(s) 70
BseXI GCAGC 5 cut(s) 32, 80, 279, 385, 439
BseYI CCCAGC 1 cut(s) 307
BsgI GTGCAG 1 cut(s) 87
BshFI GGCC 3 cut(s) 328, 471, 1126
BshVI ATCGAT 1 cut(s) 891
BsiHKAI GWGCWC 2 cut(s) 625, 1084
BsiHKCI CYCGRG 2 cut(s) 546, 670
BsiSI CCGG 2 cut(s) 487, 626
BslI CCNNNNNNNGG 3 cut(s) 307, 486, 493
BsmAI GTCTC 4 cut(s) 144, 491, 591, 1100
BsmBI CGTCTC 2 cut(s) 144, 591
BsnI GGCC 3 cut(s) 328, 471, 1126
BsoBI CYCGRG 2 cut(s) 546, 670
Bsp119I TTCGAA 1 cut(s) 1055
Bsp1286I GDGCHC 2 cut(s) 625, 1084
Bsp143I GATC 7 cut(s) 174, 314, 369, 559, 865, 985, 1168
BspACI CCGC 9 cut(s) 325, 345, 376, 401, 431, 533, 542, 618, 869
BspANI GGCC 3 cut(s) 328, 471, 1126
BspCNI CTCAG 2 cut(s) 517, 1096
BspDI ATCGAT 1 cut(s) 891
BspLI GGNNCC 3 cut(s) 58, 692, 711
BspMAI CTGCAG 2 cut(s) 22, 457
BspPI GGATC 4 cut(s) 182, 364, 860, 980
BspT104I TTCGAA 1 cut(s) 1055
BsrDI GCAATG 2 cut(s) 290, 958
BsrFI RCCGGY 1 cut(s) 486
BsrI ACTGG 2 cut(s) 87, 1065
BssAI RCCGGY 1 cut(s) 486
BssECI CCNNGG 2 cut(s) 743, 993
BssMI GATC 7 cut(s) 174, 314, 369, 559, 865, 985, 1168
BssSI CACGAG 1 cut(s) 41
BssT1I CCWWGG 1 cut(s) 993
Bst2BI CACGAG 1 cut(s) 41
Bst2UI CCWGG 3 cut(s) 745, 813, 1123
Bst4CI ACNGT 2 cut(s) 1089, 1096
BstAPI GCANNNNNTGC 1 cut(s) 292
BstBI TTCGAA 1 cut(s) 1055
BstC8I GCNNGC 4 cut(s) 288, 433, 512, 765
BstDEI CTNAG 2 cut(s) 525, 1104
BstF5I GGATG 4 cut(s) 10, 83, 755, 989
BstHHI GCGC 3 cut(s) 33, 286, 1205
BstKTI GATC 7 cut(s) 177, 317, 372, 562, 868, 988, 1171
BstMAI GTCTC 4 cut(s) 144, 491, 591, 1100
BstMBI GATC 7 cut(s) 174, 314, 369, 559, 865, 985, 1168
BstMWI GCNNNNNNNGC 5 cut(s) 283, 292, 530, 539, 542
BstNI CCWGG 3 cut(s) 745, 813, 1123
BstSCI CCNGG 3 cut(s) 743, 811, 1121
BstSFI CTRYAG 2 cut(s) 18, 453
BstV1I GCAGC 5 cut(s) 32, 80, 279, 385, 439
BstX2I RGATCY 3 cut(s) 174, 314, 369
BstYI RGATCY 3 cut(s) 174, 314, 369
Bsu15I ATCGAT 1 cut(s) 891
BsuI GTATCC 1 cut(s) 829
BsuRI GGCC 3 cut(s) 328, 471, 1126
BsuTUI ATCGAT 1 cut(s) 891
BtsCI GGATG 4 cut(s) 10, 83, 755, 989
BtsI GCAGTG 2 cut(s) 566, 946
BtsIMutI CAGTG 4 cut(s) 94, 566, 946, 1085
Cac8I GCNNGC 4 cut(s) 288, 433, 512, 765
CaiI CAGNNNCTG 1 cut(s) 568
CfoI GCGC 3 cut(s) 33, 286, 1205
Cfr10I RCCGGY 1 cut(s) 486
Cfr13I GGNCC 3 cut(s) 57, 470, 690
ClaI ATCGAT 1 cut(s) 891
CsiI ACCWGGT 1 cut(s) 811
Csp6I GTAC 1 cut(s) 748
CviAII CATG 3 cut(s) 481, 799, 1208
CviQI GTAC 1 cut(s) 748
DdeI CTNAG 2 cut(s) 525, 1104
DpnI GATC 7 cut(s) 176, 316, 371, 561, 867, 987, 1170
DpnII GATC 7 cut(s) 174, 314, 369, 559, 865, 985, 1168
Eco130I CCWWGG 1 cut(s) 993
Eco47I GGWCC 2 cut(s) 57, 690
Eco88I CYCGRG 2 cut(s) 546, 670
EcoRII CCWGG 3 cut(s) 743, 811, 1121
EcoT14I CCWWGG 1 cut(s) 993
EcoT22I ATGCAT 1 cut(s) 649
ErhI CCWWGG 1 cut(s) 993
Esp3I CGTCTC 2 cut(s) 144, 591
FaeI CATG 3 cut(s) 484, 802, 1211
FatI CATG 3 cut(s) 480, 798, 1207
FauI CCCGC 1 cut(s) 424
FbaI TGATCA 1 cut(s) 559
FblI GTMKAC 1 cut(s) 1045
Fnu4HI GCNGC 9 cut(s) 21, 69, 268, 326, 377, 399, 453, 534, 543
FokI GGATG 4 cut(s) 17, 70, 742, 976
Fsp4HI GCNGC 9 cut(s) 21, 69, 268, 326, 377, 399, 453, 534, 543
FspBI CTAG 2 cut(s) 651, 1131
GlaI GCGC 3 cut(s) 32, 285, 1204
GluI GCNGC 9 cut(s) 21, 69, 268, 326, 377, 399, 453, 534, 543
GsaI CCCAGC 1 cut(s) 311
GsuI CTGGAG 2 cut(s) 615, 1185
HaeIII GGCC 3 cut(s) 328, 471, 1126
HapII CCGG 2 cut(s) 487, 626
HhaI GCGC 3 cut(s) 33, 286, 1205
Hin1II CATG 3 cut(s) 484, 802, 1211
Hin6I GCGC 3 cut(s) 31, 284, 1203
HinP1I GCGC 3 cut(s) 31, 284, 1203
HpaII CCGG 2 cut(s) 487, 626
HphI GGTGA 3 cut(s) 398, 1154, 1166
Hpy166II GTNNAC 5 cut(s) 231, 334, 583, 1046, 1092
Hpy188I TCNGA 4 cut(s) 133, 264, 394, 913
Hpy188III TCNNGA 6 cut(s) 178, 548, 594, 651, 670, 672
Hpy8I GTNNAC 5 cut(s) 231, 334, 583, 1046, 1092
Hpy99I CGWCG 2 cut(s) 128, 172
HpyCH4III ACNGT 2 cut(s) 1089, 1096
HpyCH4IV ACGT 1 cut(s) 185
HpyCH4V TGCA 9 cut(s) 20, 68, 455, 510, 647, 841, 938, 951, 1193
HpyF10VI GCNNNNNNNGC 5 cut(s) 283, 292, 530, 539, 542
HpyF3I CTNAG 2 cut(s) 525, 1104
HpySE526I ACGT 1 cut(s) 185
Hsp92II CATG 3 cut(s) 484, 802, 1211
HspAI GCGC 3 cut(s) 31, 284, 1203
Ksp22I TGATCA 1 cut(s) 559
Kzo9I GATC 7 cut(s) 174, 314, 369, 559, 865, 985, 1168
LmnI GCTCC 5 cut(s) 76, 264, 550, 628, 1087
Lsp1109I GCAGC 5 cut(s) 32, 80, 279, 385, 439
LweI GCATC 9 cut(s) 18, 264, 634, 656, 804, 880, 919, 947, 1180
MabI ACCWGGT 1 cut(s) 811
MaeI CTAG 2 cut(s) 651, 1131
MaeII ACGT 1 cut(s) 185
MaeIII GTNAC 2 cut(s) 1016, 1096
MalI GATC 7 cut(s) 176, 316, 371, 561, 867, 987, 1170
MboI GATC 7 cut(s) 174, 314, 369, 559, 865, 985, 1168
MboII GAAGA 6 cut(s) 324, 653, 743, 1193, 1223, 1226
MflI RGATCY 3 cut(s) 174, 314, 369
MhlI GDGCHC 2 cut(s) 625, 1084
MluCI AATT 3 cut(s) 118, 244, 411
MlyI GAGTC 4 cut(s) 137, 143, 493, 720
Mph1103I ATGCAT 1 cut(s) 649
MseI TTAA 1 cut(s) 366
MslI CAYNNNNRTG 2 cut(s) 45, 951
MspA1I CMGCKG 2 cut(s) 23, 1103
MspI CCGG 2 cut(s) 487, 626
MspR9I CCNGG 3 cut(s) 745, 813, 1123
MvaI CCWGG 3 cut(s) 745, 813, 1123
MwoI GCNNNNNNNGC 5 cut(s) 283, 292, 530, 539, 542
NdeII GATC 7 cut(s) 174, 314, 369, 559, 865, 985, 1168
NlaIII CATG 3 cut(s) 484, 802, 1211
NlaIV GGNNCC 3 cut(s) 58, 692, 711
NmuCI GTSAC 2 cut(s) 1016, 1096
NsiI ATGCAT 1 cut(s) 649
NspV TTCGAA 1 cut(s) 1055
OliI CACNNNNGTG 1 cut(s) 45
PaeR7I CTCGAG 1 cut(s) 670
PcsI WCGNNNNNNNCGW 1 cut(s) 129
PflMI CCANNNNNTGG 1 cut(s) 307
PkrI GCNGC 9 cut(s) 22, 70, 269, 327, 378, 400, 454, 535, 544
PleI GAGTC 4 cut(s) 136, 142, 493, 720
PpsI GAGTC 4 cut(s) 136, 142, 493, 720
PsiI TTATAA 1 cut(s) 444
Psp6I CCWGG 3 cut(s) 743, 811, 1121
PspFI CCCAGC 1 cut(s) 307
PspGI CCWGG 3 cut(s) 743, 811, 1121
PspN4I GGNNCC 3 cut(s) 58, 692, 711
PspPI GGNCC 3 cut(s) 57, 470, 690
PstI CTGCAG 2 cut(s) 22, 457
PstNI CAGNNNCTG 1 cut(s) 568
PsuI RGATCY 3 cut(s) 174, 314, 369
PvuII CAGCTG 2 cut(s) 23, 1103
RsaI GTAC 1 cut(s) 749
RsaNI GTAC 1 cut(s) 748
RseI CAYNNNNRTG 2 cut(s) 45, 951
SaqAI TTAA 1 cut(s) 366
SatI GCNGC 9 cut(s) 21, 69, 268, 326, 377, 399, 453, 534, 543
Sau3AI GATC 7 cut(s) 174, 314, 369, 559, 865, 985, 1168
Sau96I GGNCC 3 cut(s) 57, 470, 690
SchI GAGTC 4 cut(s) 137, 143, 493, 720
ScrFI CCNGG 3 cut(s) 745, 813, 1123
SduI GDGCHC 2 cut(s) 625, 1084
SexAI ACCWGGT 1 cut(s) 811
SfaNI GCATC 9 cut(s) 18, 264, 634, 656, 804, 880, 919, 947, 1180
SfcI CTRYAG 2 cut(s) 18, 453
Sfr274I CTCGAG 1 cut(s) 670
SfuI TTCGAA 1 cut(s) 1055
SinI GGWCC 2 cut(s) 57, 690
SlaI CTCGAG 1 cut(s) 670
SmiMI CAYNNNNRTG 2 cut(s) 45, 951
SmlI CTYRAG 1 cut(s) 670
SmoI CTYRAG 1 cut(s) 670
Sse9I AATT 3 cut(s) 118, 244, 411
SsiI CCGC 9 cut(s) 325, 345, 376, 401, 431, 533, 542, 618, 869
SspMI CTAG 2 cut(s) 651, 1131
StyD4I CCNGG 3 cut(s) 743, 811, 1121
StyI CCWWGG 1 cut(s) 993
TaaI ACNGT 2 cut(s) 1089, 1096
TaiI ACGT 1 cut(s) 188
TasI AATT 3 cut(s) 118, 244, 411
TauI GCSGC 4 cut(s) 328, 379, 536, 545
Tru1I TTAA 1 cut(s) 366
Tru9I TTAA 1 cut(s) 366
TscAI CASTG 4 cut(s) 94, 573, 953, 1092
TseFI GTSAC 2 cut(s) 1016, 1096
TseI GCWGC 5 cut(s) 20, 68, 267, 398, 452
Tsp45I GTSAC 2 cut(s) 1016, 1096
TspDTI ATGAA 5 cut(s) 404, 861, 1083, 1194, 1224
TspRI CASTG 4 cut(s) 94, 573, 953, 1092
Van91I CCANNNNNTGG 1 cut(s) 307
VpaK11BI GGWCC 2 cut(s) 57, 690
XbaI TCTAGA 1 cut(s) 650
XhoI CTCGAG 1 cut(s) 670
XmiI GTMKAC 1 cut(s) 1045
XspI CTAG 2 cut(s) 651, 1131
Zsp2I ATGCAT 1 cut(s) 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.