Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0004973

Physical Location & Seq

Genomic Coordinates Reverse (-)

9901005 .. 9902231

Gene Structure 1227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG084700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGGATGGATCGTGGACTGCAGCTGTGATGCGGCGAATTCACGAGCGCGTAGTTGGATCCAGCCGTACTGCTGCTATCTCCTCCACCAGTCATGTGTGGCTTCTCGGCGTGTGCTATAAGTTCGATGAGTCCGAGTCCTCTCCACTTGCATTCGAACACGATTTTTCGTCGAGAATCTTGATGACGTATCGAAGAGGATTCGATTCGATTGAGGGTGGGGATTCCAAGTGTTTTAGCAGCGATGTGAATTGGGGGTGTATGATTCGGAGCAGTCAGATGCTTGTGGCTCAGGCATTGCTTTTCCACAGGTTGGGAAGATCTTGGAGGAGGCCTCTGGATAAGTCTTGCAGCTTGGATCAAGAGTGTGTTGAGATCTTGCGTCAATTTGGTGATTCCGAAGCTGCGGCTTTCTCCATCCACAATCTGATTGAGGCTGGCAAGGCTTATAACCTTGCTGCCGGTTCCTGGGTTGGCCCTTATGCTATGTGCCGCTCCTGGGAGACTCTTGTGTGCAAGCAGAGGGAGGCCGAGGCGGCGGCGGCAGCTCAGGAGCTTGATGACCAGCCACTGCCGATGGCTGTTTATATTGTTTCTGGAGACGAAAATGGGGAGAGAGGCGGTGCTCCGGTTGTGTGTGTTGAAGATGCATTTAGACATTGTTCAGAGTTTTCGAGAGGTCGAGTTGATTGGACGCCGATTCTTTTGCTGGTTCCTCTGGTTCTTGGACTTGAAGAACTCAATCCCAGGTACATTCCATCCTTGCGGGCTACGTTTACCTTTCCTCAAAGTGTTGGCATCATGGGTGGCAGACCTGGTGTATCTACTTACATTATTGGAGTGCAAGATGAAAATGCAATTTACCTTGATCCACATCTAGTTCAGCCTGTAGTCAATTTGAGTAGTAATGATTTAGATAGTGATGCTACTTCTTCTTACCACTGCAATGTTATACGCCACATTCCTTTAGATACAATTGATCCATCCCTGGCAATTGGATTCTATTGCCGTGACAAAGATGATTTTGATGATTTTTGTCTACGAGCTTCAAAGCTGGCAGATGAATCAAATGGTGCTCCACTGTTTACTGTGAGTGCTGAAACACATAATTTGTCCAAGCCACCTAGCCAGAGTGATGATGATTTGGGTGATAATGGTGGCGATCAAAACAATGAAGATGCAGATGGAGATGGAAGCGCACATGAAGAAGATGATTGGCAACTCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000422 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006497 GO:0006501 GO:0006508 GO:0006605 GO:0006612 GO:0006807 GO:0006810 GO:0006886 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008104 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009058 GO:0009059 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0016236 GO:0016787 GO:0018410 GO:0019538 GO:0022411 GO:0022607 GO:0033036 GO:0034613 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042886 GO:0043170 GO:0043412 GO:0043687 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051697 GO:0061726 GO:0061919 GO:0070011 GO:0070727 GO:0070925 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072657 GO:0090150 GO:0140096 GO:1901564 GO:1901566 GO:1901576 GO:1903008 GO:1905037

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 map04136 map04138 map04140

Pfam Domains

Protein Families

Peptidase_C54

Protein Analysis

408

Amino Acids

44.92

Weight (kDa)

4.6

Isoelectric Point (pI)

51.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C54	PF03416	50 - 345	2.5e-89	Peptidase C54 catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004973)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44140 AT2G44140 AT2G44140 AT2G44140 AT2G44140 AT3G59950 AT3G59950 AT3G59950 AT3G59950 AT3G59950
fragaria_vesca	FvH4_2g06800
malus_domestica	MD00G1055200.v1.1 MD07G1000400.v1.1
prunus_persica	Prupe.2G000200_v2.0.a1 Prupe.2G000200_v2.0.a1 Prupe.2G000200_v2.0.a1 Prupe.2G000200_v2.0.a1 Prupe.2G000200_v2.0.a1
pyrus_communis	pycom07g00040 pycom1315g00010
rosa_chinensis	RchiOBHm_Chr6g0259021
rosa_laevigata	RLG00000014563
rosa_multiflora	Rmu_ssc0000050.1_g000115
rosa_roxburghii	Rroxscaffold_7G00206260
rosa_rugosa	Rorug05G0584900
rosa_samantha	Rh6AG101300 Rh6BG093400 Rh6CG090800 Rh6DG084700
rosa_wichuraiana	Rw6G008810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	447
AccB7I	CCANNNNNTGG	1 cut(s)	310
AccBSI	CCGCTC	1 cut(s)	492
AccI	GTMKAC	1 cut(s)	1036
AccII	CGCG	1 cut(s)	48
AciI	CCGC	8 cut(s)	31, 404, 490, 533, 536, 539, 618, 763
AclWI	GGATC	6 cut(s)	16, 51, 64, 363, 860, 971
AcsI	RAATTY	1 cut(s)	36
AcyI	GRCGYC	1 cut(s)	692
AfaI	GTAC	2 cut(s)	67, 749
AfiI	CCNNNNNNNGG	3 cut(s)	310, 465, 496
AgsI	TTSAA	3 cut(s)	641, 731, 1047
AjnI	CCWGG	5 cut(s)	464, 494, 743, 811, 984
AluBI	AGCT	7 cut(s)	23, 351, 401, 545, 553, 1043, 1051
AluI	AGCT	7 cut(s)	23, 351, 401, 545, 553, 1043, 1051
Alw21I	GWGCWC	2 cut(s)	625, 1075
Alw26I	GTCTC	2 cut(s)	494, 591
AlwI	GGATC	6 cut(s)	16, 51, 64, 363, 860, 971
AlwNI	CAGNNNCTG	1 cut(s)	568
AoxI	GGCC	3 cut(s)	329, 472, 525
ApeKI	GCWGC	7 cut(s)	20, 71, 237, 348, 401, 455, 542
ApoI	RAATTY	1 cut(s)	36
AspLEI	GCGC	2 cut(s)	48, 1196
AspS9I	GGNCC	1 cut(s)	473
AsuHPI	GGTGA	2 cut(s)	401, 1157
AsuII	TTCGAA	1 cut(s)	153
BamHI	GGATCC	1 cut(s)	56
BauI	CACGAG	1 cut(s)	41
Bbv12I	GWGCWC	2 cut(s)	625, 1075
BbvI	GCAGC	7 cut(s)	32, 58, 249, 360, 388, 442, 554
BccI	CCATC	6 cut(s)	422, 568, 763, 988, 1175, 1181
BceAI	ACGGC	2 cut(s)	48, 990
BcgI	CGANNNNNNTGC	2 cut(s)	685, 719
BciT130I	CCWGG	5 cut(s)	466, 496, 745, 813, 986
BcoDI	GTCTC	2 cut(s)	494, 591
BfaI	CTAG	2 cut(s)	875, 1122
BfmI	CTRYAG	2 cut(s)	18, 885
BglI	GCCNNNNNGGC	1 cut(s)	533
BglII	AGATCT	2 cut(s)	317, 372
Bme1390I	CCNGG	5 cut(s)	466, 496, 745, 813, 986
BmgT120I	GGNCC	1 cut(s)	473
BmiI	GGNNCC	3 cut(s)	58, 463, 711
BmrFI	CCNGG	5 cut(s)	466, 496, 745, 813, 986
BmsI	GCATC	6 cut(s)	18, 267, 634, 804, 910, 1165
BplI	GAGNNNNNCTC	2 cut(s)	316, 348
BpmI	CTGGAG	1 cut(s)	615
Bpu10I	CCTNAGC	2 cut(s)	288, 546
Bpu14I	TTCGAA	1 cut(s)	153
BsaBI	GATNNNNATC	1 cut(s)	870
BsaHI	GRCGYC	1 cut(s)	692
BsaJI	CCNNGG	5 cut(s)	465, 495, 528, 743, 984
BsaWI	WCCGGW	1 cut(s)	625
Bsc4I	CCNNNNNNNGG	3 cut(s)	310, 465, 496
Bse118I	RCCGGY	1 cut(s)	458
Bse1I	ACTGG	1 cut(s)	87
Bse3DI	GCAATG	2 cut(s)	293, 949
Bse8I	GATNNNNATC	1 cut(s)	870
BseBI	CCWGG	5 cut(s)	466, 496, 745, 813, 986
BseDI	CCNNGG	5 cut(s)	465, 495, 528, 743, 984
BseGI	GGATG	4 cut(s)	10, 414, 755, 980
BseJI	GATNNNNATC	1 cut(s)	870
BseLI	CCNNNNNNNGG	3 cut(s)	310, 465, 496
BseMI	GCAATG	2 cut(s)	293, 949
BseMII	CTCAG	2 cut(s)	302, 560
BseNI	ACTGG	1 cut(s)	87
BseRI	GAGGAG	3 cut(s)	70, 340, 1211
BseXI	GCAGC	7 cut(s)	32, 58, 249, 360, 388, 442, 554
Bsh1236I	CGCG	1 cut(s)	48
BshFI	GGCC	3 cut(s)	331, 474, 527
BsiHKAI	GWGCWC	2 cut(s)	625, 1075
BsiSI	CCGG	2 cut(s)	459, 626
BslI	CCNNNNNNNGG	3 cut(s)	310, 465, 496
BsmAI	GTCTC	2 cut(s)	494, 591
BsmBI	CGTCTC	1 cut(s)	591
BsmI	GAATGC	1 cut(s)	149
BsnI	GGCC	3 cut(s)	331, 474, 527
Bsp119I	TTCGAA	1 cut(s)	153
Bsp1286I	GDGCHC	2 cut(s)	625, 1075
Bsp143I	GATC	8 cut(s)	8, 56, 317, 355, 372, 865, 976, 1159
BspACI	CCGC	8 cut(s)	31, 404, 490, 533, 536, 539, 618, 763
BspANI	GGCC	3 cut(s)	331, 474, 527
BspCNI	CTCAG	2 cut(s)	301, 559
BspFNI	CGCG	1 cut(s)	48
BspLI	GGNNCC	3 cut(s)	58, 463, 711
BspMAI	CTGCAG	1 cut(s)	22
BspPI	GGATC	6 cut(s)	16, 51, 64, 363, 860, 971
BspT104I	TTCGAA	1 cut(s)	153
BsrBI	CCGCTC	1 cut(s)	492
BsrDI	GCAATG	2 cut(s)	293, 949
BsrFI	RCCGGY	1 cut(s)	458
BsrI	ACTGG	1 cut(s)	87
BssAI	RCCGGY	1 cut(s)	458
BssECI	CCNNGG	5 cut(s)	465, 495, 528, 743, 984
BssMI	GATC	8 cut(s)	8, 56, 317, 355, 372, 865, 976, 1159
BssNI	GRCGYC	1 cut(s)	692
BssSI	CACGAG	1 cut(s)	41
Bst2BI	CACGAG	1 cut(s)	41
Bst2UI	CCWGG	5 cut(s)	466, 496, 745, 813, 986
Bst4CI	ACNGT	2 cut(s)	1080, 1087
Bst6I	CTCTTC	1 cut(s)	187
BstACI	GRCGYC	1 cut(s)	692
BstBI	TTCGAA	1 cut(s)	153
BstC8I	GCNNGC	4 cut(s)	436, 515, 765, 1053
BstDEI	CTNAG	2 cut(s)	288, 546
BstF5I	GGATG	4 cut(s)	10, 414, 755, 980
BstFNI	CGCG	1 cut(s)	48
BstHHI	GCGC	2 cut(s)	48, 1196
BstKTI	GATC	8 cut(s)	11, 59, 320, 358, 375, 868, 979, 1162
BstMAI	GTCTC	2 cut(s)	494, 591
BstMBI	GATC	8 cut(s)	8, 56, 317, 355, 372, 865, 976, 1159
BstMWI	GCNNNNNNNGC	4 cut(s)	440, 533, 539, 542
BstNI	CCWGG	5 cut(s)	466, 496, 745, 813, 986
BstSCI	CCNGG	5 cut(s)	464, 494, 743, 811, 984
BstSFI	CTRYAG	2 cut(s)	18, 885
BstUI	CGCG	1 cut(s)	48
BstV1I	GCAGC	7 cut(s)	32, 58, 249, 360, 388, 442, 554
BstX2I	RGATCY	3 cut(s)	56, 317, 372
BstYI	RGATCY	3 cut(s)	56, 317, 372
BsuRI	GGCC	3 cut(s)	331, 474, 527
BtgZI	GCGATG	1 cut(s)	255
BtsCI	GGATG	4 cut(s)	10, 414, 755, 980
BtsI	GCAGTG	2 cut(s)	566, 937
BtsIMutI	CAGTG	3 cut(s)	566, 937, 1076
Cac8I	GCNNGC	4 cut(s)	436, 515, 765, 1053
CaiI	CAGNNNCTG	1 cut(s)	568
CfoI	GCGC	2 cut(s)	48, 1196
Cfr10I	RCCGGY	1 cut(s)	458
Cfr13I	GGNCC	1 cut(s)	473
CseI	GACGC	2 cut(s)	368, 700
CsiI	ACCWGGT	1 cut(s)	811
Csp6I	GTAC	2 cut(s)	66, 748
CviAII	CATG	3 cut(s)	92, 799, 1199
CviQI	GTAC	2 cut(s)	66, 748
DdeI	CTNAG	2 cut(s)	288, 546
DpnI	GATC	8 cut(s)	10, 58, 319, 357, 374, 867, 978, 1161
DpnII	GATC	8 cut(s)	8, 56, 317, 355, 372, 865, 976, 1159
Eam1104I	CTCTTC	1 cut(s)	187
EarI	CTCTTC	1 cut(s)	187
Eco147I	AGGCCT	1 cut(s)	331
EcoRI	GAATTC	1 cut(s)	36
EcoRII	CCWGG	5 cut(s)	464, 494, 743, 811, 984
EcoT22I	ATGCAT	1 cut(s)	649
Esp3I	CGTCTC	1 cut(s)	591
FaeI	CATG	3 cut(s)	95, 802, 1202
FatI	CATG	3 cut(s)	91, 798, 1198
FauI	CCCGC	1 cut(s)	756
FblI	GTMKAC	1 cut(s)	1036
FokI	GGATG	4 cut(s)	17, 401, 742, 967
FspBI	CTAG	2 cut(s)	875, 1122
GlaI	GCGC	2 cut(s)	47, 1195
GsuI	CTGGAG	1 cut(s)	615
HaeIII	GGCC	3 cut(s)	331, 474, 527
HapII	CCGG	2 cut(s)	459, 626
HgaI	GACGC	2 cut(s)	368, 700
HhaI	GCGC	2 cut(s)	48, 1196
Hin1I	GRCGYC	1 cut(s)	692
Hin1II	CATG	3 cut(s)	95, 802, 1202
Hin6I	GCGC	2 cut(s)	46, 1194
HinP1I	GCGC	2 cut(s)	46, 1194
HpaII	CCGG	2 cut(s)	459, 626
HphI	GGTGA	2 cut(s)	401, 1157
Hpy166II	GTNNAC	4 cut(s)	15, 774, 1037, 1083
Hpy188I	TCNGA	7 cut(s)	133, 267, 276, 397, 426, 664, 1226
Hpy188III	TCNNGA	8 cut(s)	41, 171, 178, 335, 359, 548, 594, 672
Hpy8I	GTNNAC	4 cut(s)	15, 774, 1037, 1083
Hpy99I	CGWCG	1 cut(s)	172
HpyCH4III	ACNGT	2 cut(s)	1080, 1087
HpyCH4IV	ACGT	2 cut(s)	185, 770
HpyCH4V	TGCA	9 cut(s)	20, 149, 348, 513, 647, 841, 854, 942, 1178
HpyF10VI	GCNNNNNNNGC	4 cut(s)	440, 533, 539, 542
HpyF3I	CTNAG	2 cut(s)	288, 546
HpySE526I	ACGT	2 cut(s)	185, 770
Hsp92I	GRCGYC	1 cut(s)	692
Hsp92II	CATG	3 cut(s)	95, 802, 1202
HspAI	GCGC	2 cut(s)	46, 1194
Kzo9I	GATC	8 cut(s)	8, 56, 317, 355, 372, 865, 976, 1159
LmnI	GCTCC	5 cut(s)	267, 497, 550, 628, 1078
Lsp1109I	GCAGC	7 cut(s)	32, 58, 249, 360, 388, 442, 554
LweI	GCATC	6 cut(s)	18, 267, 634, 804, 910, 1165
MabI	ACCWGGT	1 cut(s)	811
MaeI	CTAG	2 cut(s)	875, 1122
MaeII	ACGT	2 cut(s)	185, 770
MaeIII	GTNAC	1 cut(s)	1007
MalI	GATC	8 cut(s)	10, 58, 319, 357, 374, 867, 978, 1161
MbiI	CCGCTC	1 cut(s)	492
MboI	GATC	8 cut(s)	8, 56, 317, 355, 372, 865, 976, 1159
MboII	GAAGA	8 cut(s)	204, 327, 653, 743, 921, 1184, 1214, 1217
MfeI	CAATTG	2 cut(s)	972, 990
MflI	RGATCY	3 cut(s)	56, 317, 372
MhlI	GDGCHC	2 cut(s)	625, 1075
MluCI	AATT	8 cut(s)	36, 247, 383, 855, 892, 972, 990, 1105
MlyI	GAGTC	3 cut(s)	137, 143, 496
MmeI	TCCRAC	1 cut(s)	34
Mph1103I	ATGCAT	1 cut(s)	649
MslI	CAYNNNNRTG	1 cut(s)	942
MspA1I	CMGCKG	1 cut(s)	23
MspI	CCGG	2 cut(s)	459, 626
MspR9I	CCNGG	5 cut(s)	466, 496, 745, 813, 986
MunI	CAATTG	2 cut(s)	972, 990
Mva1269I	GAATGC	1 cut(s)	149
MvaI	CCWGG	5 cut(s)	466, 496, 745, 813, 986
MvnI	CGCG	1 cut(s)	48
MwoI	GCNNNNNNNGC	4 cut(s)	440, 533, 539, 542
NdeII	GATC	8 cut(s)	8, 56, 317, 355, 372, 865, 976, 1159
NlaIII	CATG	3 cut(s)	95, 802, 1202
NlaIV	GGNNCC	3 cut(s)	58, 463, 711
NmeAIII	GCCGAG	2 cut(s)	84, 553
NmuCI	GTSAC	1 cut(s)	1007
NsiI	ATGCAT	1 cut(s)	649
NspV	TTCGAA	1 cut(s)	153
PceI	AGGCCT	1 cut(s)	331
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PctI	GAATGC	1 cut(s)	149
PfeI	GAWTC	9 cut(s)	174, 198, 203, 221, 262, 392, 697, 996, 1061
PflMI	CCANNNNNTGG	1 cut(s)	310
PleI	GAGTC	3 cut(s)	136, 142, 496
PpsI	GAGTC	3 cut(s)	136, 142, 496
PsiI	TTATAA	1 cut(s)	447
Psp6I	CCWGG	5 cut(s)	464, 494, 743, 811, 984
PspGI	CCWGG	5 cut(s)	464, 494, 743, 811, 984
PspN4I	GGNNCC	3 cut(s)	58, 463, 711
PspPI	GGNCC	1 cut(s)	473
PstI	CTGCAG	1 cut(s)	22
PstNI	CAGNNNCTG	1 cut(s)	568
PsuI	RGATCY	3 cut(s)	56, 317, 372
PvuII	CAGCTG	1 cut(s)	23
RsaI	GTAC	2 cut(s)	67, 749
RsaNI	GTAC	2 cut(s)	66, 748
RseI	CAYNNNNRTG	1 cut(s)	942
Sau3AI	GATC	8 cut(s)	8, 56, 317, 355, 372, 865, 976, 1159
Sau96I	GGNCC	1 cut(s)	473
SchI	GAGTC	3 cut(s)	137, 143, 496
ScrFI	CCNGG	5 cut(s)	466, 496, 745, 813, 986
SduI	GDGCHC	2 cut(s)	625, 1075
SexAI	ACCWGGT	1 cut(s)	811
SfaNI	GCATC	6 cut(s)	18, 267, 634, 804, 910, 1165
SfcI	CTRYAG	2 cut(s)	18, 885
SfuI	TTCGAA	1 cut(s)	153
SmiMI	CAYNNNNRTG	1 cut(s)	942
Sse9I	AATT	8 cut(s)	36, 247, 383, 855, 892, 972, 990, 1105
SseBI	AGGCCT	1 cut(s)	331
SsiI	CCGC	8 cut(s)	31, 404, 490, 533, 536, 539, 618, 763
SspMI	CTAG	2 cut(s)	875, 1122
StuI	AGGCCT	1 cut(s)	331
StyD4I	CCNGG	5 cut(s)	464, 494, 743, 811, 984
TaaI	ACNGT	2 cut(s)	1080, 1087
TaiI	ACGT	2 cut(s)	188, 773
TaqI	TCGA	8 cut(s)	123, 153, 170, 190, 201, 206, 671, 679
TasI	AATT	8 cut(s)	36, 247, 383, 855, 892, 972, 990, 1105
TauI	GCSGC	6 cut(s)	34, 407, 492, 536, 539, 542
TfiI	GAWTC	9 cut(s)	174, 198, 203, 221, 262, 392, 697, 996, 1061
TscAI	CASTG	3 cut(s)	573, 944, 1083
TseFI	GTSAC	1 cut(s)	1007
TseI	GCWGC	7 cut(s)	20, 71, 237, 348, 401, 455, 542
Tsp45I	GTSAC	1 cut(s)	1007
TspDTI	ATGAA	4 cut(s)	861, 1074, 1185, 1215
TspRI	CASTG	3 cut(s)	573, 944, 1083
Van91I	CCANNNNNTGG	1 cut(s)	310
XapI	RAATTY	1 cut(s)	36
XmiI	GTMKAC	1 cut(s)	1036
XspI	CTAG	2 cut(s)	875, 1122
Zsp2I	ATGCAT	1 cut(s)	649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.