RchiOBHm_Chr6g0259021

cysteine protease

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
14349311 .. 14350908
1598 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23227

Sequence Viewer

Length: 1227 bp
ATGATGGATGGATCGTGGACTGCAGCTGTGATGCGGCGAATTCACGAGCGCGTAGTTGGATCCAGCCGTACTGCTGCTATCTCCTCCACCAGTCATGTGTGGCTTCTCGGCGTGTGCTATAAGTTCGATGAGTCCGAGTCCTCTCCACTTGCATTCGAACACGATTTTTCGTCGAGAATCTTGATGACGTATCGAAGAGGATTCGATTCGATTGAGGGTGGGGATTCCAAGTGTTTTAGCAGCGATGTGAATTGGGGGTGTATGATTCGGAGCAGTCAGATGCTCGTGGCTCAGGCATTGCTTTTCCACAGGTTGGGAAGATCTTGGAGGAGACCTCTGGACAAGTCTTGCAGCTTGGATCAAGAGTGTGTTGAGATCTTGCGTCAATTTGGTGATTCCGAAGCTGCGCCTTTCTCCATCCACAATCTGATTGAGGCTGGCAAGGCTTATAACCTTGCTGCCGGTTCCTGGGTTGGCCCTTATGCTATGTGCCGCTCCTGGGAGACTCTTGTGTGCAAGCAGAGGGAGGCCGAGGCCGCGGCAGCTCAGGAGCTTGATGACCAGCCACTGCCGATGGCTGTTTATATTGTTTCTGGAGACGAAAATGGGGAGAGAGGCGGTGCTCCGGTTGTGTGTGTTGAAGATGCATTTAGACATTGTTCAGAGTCTTCGGGAGGTCGAGTTGATTGGACGCCGATTCTTTTGCTGGTTCCTCTGGTTCTTGGACTTGAAGAACTTAATCCCAGGTACATTCCATCCTTGCGAGCTACGTTTACCTTTCCTCAAAGTGTTGGCATCATGGGTGGCAGACCTGGTGTATCAACTTACATTATTGGAGTGCAAGATGAAAATGCAATCTACCTTGATCCACATCTAGTTCAGCCTGTAGTCAATTTGAGTAGTAATGATTTAGATAGTGATGCTACTTCTTCTTACCACTGCAATGTTATACGCCACATTCCTTTAGATACAATTGATCCATCCCTGGCAATTGGATTCTATTGCCGTGACAAAGATGATTTTGATGATTTTTGTCTACGAGCTTCGAAGCTGGCAGATGAATCAAATGGTGCTCCACTGTTTACTGTGAGTGCTGAAACACATAATTTGTCCAAGCCACCTAGCCAGAGTGATGATGATTTGGGTGATAATGGTGGCGATCAAAACAATGAAGATGCAGATGGAGATGGAAGCGCACATGAAGAAGATGATTGGCAACTCCTCTGA

Protein Analysis

408

Amino Acids

44.84

Weight (kDa)

4.57

Isoelectric Point (pI)

53.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C54 PF03416 51 - 345 4.6e-90 Peptidase C54 catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 450
AccB7I CCANNNNNTGG 1 cut(s) 313
AccBSI CCGCTC 1 cut(s) 495
AccI GTMKAC 1 cut(s) 1036
AccII CGCG 2 cut(s) 51, 539
AciI CCGC 5 cut(s) 34, 493, 537, 539, 618
AclWI GGATC 6 cut(s) 19, 54, 67, 366, 860, 971
AcsI RAATTY 1 cut(s) 39
AcyI GRCGYC 1 cut(s) 692
AfaI GTAC 2 cut(s) 70, 749
AfiI CCNNNNNNNGG 3 cut(s) 313, 468, 499
AgsI TTSAA 2 cut(s) 641, 731
AjnI CCWGG 5 cut(s) 467, 497, 743, 811, 984
AluBI AGCT 8 cut(s) 26, 354, 404, 545, 553, 767, 1043, 1051
AluI AGCT 8 cut(s) 26, 354, 404, 545, 553, 767, 1043, 1051
Alw21I GWGCWC 2 cut(s) 625, 1075
Alw26I GTCTC 3 cut(s) 325, 497, 591
AlwI GGATC 6 cut(s) 19, 54, 67, 366, 860, 971
AlwNI CAGNNNCTG 1 cut(s) 568
AoxI GGCC 3 cut(s) 475, 528, 534
ApeKI GCWGC 7 cut(s) 23, 74, 240, 351, 404, 458, 542
ApoI RAATTY 1 cut(s) 39
AspLEI GCGC 3 cut(s) 51, 409, 1196
AspS9I GGNCC 1 cut(s) 476
AsuHPI GGTGA 2 cut(s) 404, 1157
AsuII TTCGAA 2 cut(s) 156, 1046
BamHI GGATCC 1 cut(s) 59
BauI CACGAG 2 cut(s) 44, 284
BbsI GAAGAC 1 cut(s) 660
Bbv12I GWGCWC 2 cut(s) 625, 1075
BbvI GCAGC 7 cut(s) 35, 61, 252, 363, 391, 445, 554
BccI CCATC 7 cut(s) 2, 425, 568, 763, 988, 1175, 1181
BceAI ACGGC 2 cut(s) 51, 990
BcgI CGANNNNNNTGC 2 cut(s) 685, 719
BciT130I CCWGG 5 cut(s) 469, 499, 745, 813, 986
BcoDI GTCTC 3 cut(s) 325, 497, 591
BfaI CTAG 2 cut(s) 875, 1122
BfmI CTRYAG 2 cut(s) 21, 885
BglII AGATCT 2 cut(s) 320, 375
Bme1390I CCNGG 5 cut(s) 469, 499, 745, 813, 986
BmgT120I GGNCC 1 cut(s) 476
BmiI GGNNCC 3 cut(s) 61, 466, 711
BmrFI CCNGG 5 cut(s) 469, 499, 745, 813, 986
BmsI GCATC 6 cut(s) 21, 270, 634, 804, 910, 1165
BpiI GAAGAC 1 cut(s) 660
BplI GAGNNNNNCTC 2 cut(s) 319, 351
BpmI CTGGAG 1 cut(s) 615
Bpu10I CCTNAGC 2 cut(s) 291, 546
Bpu14I TTCGAA 2 cut(s) 156, 1046
BsaBI GATNNNNATC 1 cut(s) 870
BsaHI GRCGYC 1 cut(s) 692
BsaI GGTCTC 1 cut(s) 325
BsaJI CCNNGG 6 cut(s) 468, 498, 531, 537, 743, 984
BsaWI WCCGGW 1 cut(s) 625
BsaXI ACNNNNNCTCC 2 cut(s) 666, 696
Bsc4I CCNNNNNNNGG 3 cut(s) 313, 468, 499
Bse118I RCCGGY 1 cut(s) 461
Bse1I ACTGG 1 cut(s) 90
Bse3DI GCAATG 2 cut(s) 296, 949
Bse8I GATNNNNATC 1 cut(s) 870
BseBI CCWGG 5 cut(s) 469, 499, 745, 813, 986
BseDI CCNNGG 6 cut(s) 468, 498, 531, 537, 743, 984
BseGI GGATG 4 cut(s) 13, 417, 755, 980
BseJI GATNNNNATC 1 cut(s) 870
BseLI CCNNNNNNNGG 3 cut(s) 313, 468, 499
BseMI GCAATG 2 cut(s) 296, 949
BseMII CTCAG 2 cut(s) 305, 560
BseNI ACTGG 1 cut(s) 90
BseRI GAGGAG 3 cut(s) 73, 343, 1211
BseXI GCAGC 7 cut(s) 35, 61, 252, 363, 391, 445, 554
Bsh1236I CGCG 2 cut(s) 51, 539
BshFI GGCC 3 cut(s) 477, 530, 536
BsiHKAI GWGCWC 2 cut(s) 625, 1075
BsiSI CCGG 2 cut(s) 462, 626
BslI CCNNNNNNNGG 3 cut(s) 313, 468, 499
BsmAI GTCTC 3 cut(s) 325, 497, 591
BsmBI CGTCTC 1 cut(s) 591
BsmI GAATGC 1 cut(s) 152
BsnI GGCC 3 cut(s) 477, 530, 536
Bso31I GGTCTC 1 cut(s) 325
Bsp119I TTCGAA 2 cut(s) 156, 1046
Bsp1286I GDGCHC 2 cut(s) 625, 1075
Bsp143I GATC 8 cut(s) 11, 59, 320, 358, 375, 865, 976, 1159
BspACI CCGC 5 cut(s) 34, 493, 537, 539, 618
BspANI GGCC 3 cut(s) 477, 530, 536
BspCNI CTCAG 2 cut(s) 304, 559
BspFNI CGCG 2 cut(s) 51, 539
BspLI GGNNCC 3 cut(s) 61, 466, 711
BspMAI CTGCAG 1 cut(s) 25
BspPI GGATC 6 cut(s) 19, 54, 67, 366, 860, 971
BspT104I TTCGAA 2 cut(s) 156, 1046
BspTNI GGTCTC 1 cut(s) 325
BsrBI CCGCTC 1 cut(s) 495
BsrDI GCAATG 2 cut(s) 296, 949
BsrFI RCCGGY 1 cut(s) 461
BsrI ACTGG 1 cut(s) 90
BssAI RCCGGY 1 cut(s) 461
BssECI CCNNGG 6 cut(s) 468, 498, 531, 537, 743, 984
BssMI GATC 8 cut(s) 11, 59, 320, 358, 375, 865, 976, 1159
BssNI GRCGYC 1 cut(s) 692
BssSI CACGAG 2 cut(s) 44, 284
Bst2BI CACGAG 2 cut(s) 44, 284
Bst2UI CCWGG 5 cut(s) 469, 499, 745, 813, 986
Bst4CI ACNGT 2 cut(s) 1080, 1087
Bst6I CTCTTC 1 cut(s) 190
BstACI GRCGYC 1 cut(s) 692
BstBI TTCGAA 2 cut(s) 156, 1046
BstC8I GCNNGC 4 cut(s) 439, 518, 765, 1053
BstDEI CTNAG 2 cut(s) 291, 546
BstDSI CCRYGG 1 cut(s) 537
BstF5I GGATG 4 cut(s) 13, 417, 755, 980
BstFNI CGCG 2 cut(s) 51, 539
BstHHI GCGC 3 cut(s) 51, 409, 1196
BstKTI GATC 8 cut(s) 14, 62, 323, 361, 378, 868, 979, 1162
BstMAI GTCTC 3 cut(s) 325, 497, 591
BstMBI GATC 8 cut(s) 11, 59, 320, 358, 375, 865, 976, 1159
BstMWI GCNNNNNNNGC 3 cut(s) 443, 536, 542
BstNI CCWGG 5 cut(s) 469, 499, 745, 813, 986
BstSCI CCNGG 5 cut(s) 467, 497, 743, 811, 984
BstSFI CTRYAG 2 cut(s) 21, 885
BstUI CGCG 2 cut(s) 51, 539
BstV1I GCAGC 7 cut(s) 35, 61, 252, 363, 391, 445, 554
BstV2I GAAGAC 1 cut(s) 660
BstX2I RGATCY 3 cut(s) 59, 320, 375
BstYI RGATCY 3 cut(s) 59, 320, 375
BsuRI GGCC 3 cut(s) 477, 530, 536
BtgI CCRYGG 1 cut(s) 537
BtgZI GCGATG 1 cut(s) 258
BtsCI GGATG 4 cut(s) 13, 417, 755, 980
BtsI GCAGTG 2 cut(s) 566, 937
BtsIMutI CAGTG 3 cut(s) 566, 937, 1076
Cac8I GCNNGC 4 cut(s) 439, 518, 765, 1053
CaiI CAGNNNCTG 1 cut(s) 568
CfoI GCGC 3 cut(s) 51, 409, 1196
Cfr10I RCCGGY 1 cut(s) 461
Cfr13I GGNCC 1 cut(s) 476
Cfr42I CCGCGG 1 cut(s) 540
CseI GACGC 2 cut(s) 371, 700
CsiI ACCWGGT 1 cut(s) 811
Csp6I GTAC 2 cut(s) 69, 748
CviAII CATG 3 cut(s) 95, 799, 1199
CviQI GTAC 2 cut(s) 69, 748
DdeI CTNAG 2 cut(s) 291, 546
DpnI GATC 8 cut(s) 13, 61, 322, 360, 377, 867, 978, 1161
DpnII GATC 8 cut(s) 11, 59, 320, 358, 375, 865, 976, 1159
Eam1104I CTCTTC 1 cut(s) 190
EarI CTCTTC 1 cut(s) 190
Eco31I GGTCTC 1 cut(s) 325
EcoRI GAATTC 1 cut(s) 39
EcoRII CCWGG 5 cut(s) 467, 497, 743, 811, 984
EcoT22I ATGCAT 1 cut(s) 649
Esp3I CGTCTC 1 cut(s) 591
FaeI CATG 3 cut(s) 98, 802, 1202
FatI CATG 3 cut(s) 94, 798, 1198
FblI GTMKAC 1 cut(s) 1036
FokI GGATG 4 cut(s) 20, 404, 742, 967
FspBI CTAG 2 cut(s) 875, 1122
GlaI GCGC 3 cut(s) 50, 408, 1195
GsuI CTGGAG 1 cut(s) 615
HaeIII GGCC 3 cut(s) 477, 530, 536
HapII CCGG 2 cut(s) 462, 626
HgaI GACGC 2 cut(s) 371, 700
HhaI GCGC 3 cut(s) 51, 409, 1196
Hin1I GRCGYC 1 cut(s) 692
Hin1II CATG 3 cut(s) 98, 802, 1202
Hin6I GCGC 3 cut(s) 49, 407, 1194
HinP1I GCGC 3 cut(s) 49, 407, 1194
HpaII CCGG 2 cut(s) 462, 626
HphI GGTGA 2 cut(s) 404, 1157
Hpy166II GTNNAC 4 cut(s) 18, 774, 1037, 1083
Hpy188I TCNGA 7 cut(s) 136, 270, 279, 400, 429, 664, 1226
Hpy188III TCNNGA 8 cut(s) 44, 174, 181, 338, 362, 548, 594, 672
Hpy8I GTNNAC 4 cut(s) 18, 774, 1037, 1083
Hpy99I CGWCG 1 cut(s) 175
HpyCH4III ACNGT 2 cut(s) 1080, 1087
HpyCH4IV ACGT 2 cut(s) 188, 770
HpyCH4V TGCA 9 cut(s) 23, 152, 351, 516, 647, 841, 854, 942, 1178
HpyF10VI GCNNNNNNNGC 3 cut(s) 443, 536, 542
HpyF3I CTNAG 2 cut(s) 291, 546
HpySE526I ACGT 2 cut(s) 188, 770
Hsp92I GRCGYC 1 cut(s) 692
Hsp92II CATG 3 cut(s) 98, 802, 1202
HspAI GCGC 3 cut(s) 49, 407, 1194
KspI CCGCGG 1 cut(s) 540
Kzo9I GATC 8 cut(s) 11, 59, 320, 358, 375, 865, 976, 1159
LmnI GCTCC 5 cut(s) 270, 500, 550, 628, 1078
Lsp1109I GCAGC 7 cut(s) 35, 61, 252, 363, 391, 445, 554
LweI GCATC 6 cut(s) 21, 270, 634, 804, 910, 1165
MabI ACCWGGT 1 cut(s) 811
MaeI CTAG 2 cut(s) 875, 1122
MaeII ACGT 2 cut(s) 188, 770
MaeIII GTNAC 1 cut(s) 1007
MalI GATC 8 cut(s) 13, 61, 322, 360, 377, 867, 978, 1161
MbiI CCGCTC 1 cut(s) 495
MboI GATC 8 cut(s) 11, 59, 320, 358, 375, 865, 976, 1159
MboII GAAGA 9 cut(s) 207, 330, 653, 660, 743, 921, 1184, 1214, 1217
MfeI CAATTG 2 cut(s) 972, 990
MflI RGATCY 3 cut(s) 59, 320, 375
MhlI GDGCHC 2 cut(s) 625, 1075
MluCI AATT 7 cut(s) 39, 250, 386, 892, 972, 990, 1105
MlyI GAGTC 4 cut(s) 140, 146, 499, 674
MmeI TCCRAC 1 cut(s) 37
Mph1103I ATGCAT 1 cut(s) 649
MseI TTAA 1 cut(s) 738
MslI CAYNNNNRTG 1 cut(s) 942
MspA1I CMGCKG 2 cut(s) 26, 539
MspI CCGG 2 cut(s) 462, 626
MspR9I CCNGG 5 cut(s) 469, 499, 745, 813, 986
MunI CAATTG 2 cut(s) 972, 990
Mva1269I GAATGC 1 cut(s) 152
MvaI CCWGG 5 cut(s) 469, 499, 745, 813, 986
MvnI CGCG 2 cut(s) 51, 539
MwoI GCNNNNNNNGC 3 cut(s) 443, 536, 542
NdeII GATC 8 cut(s) 11, 59, 320, 358, 375, 865, 976, 1159
NlaIII CATG 3 cut(s) 98, 802, 1202
NlaIV GGNNCC 3 cut(s) 61, 466, 711
NmeAIII GCCGAG 2 cut(s) 87, 556
NmuCI GTSAC 1 cut(s) 1007
NsiI ATGCAT 1 cut(s) 649
NspV TTCGAA 2 cut(s) 156, 1046
PcsI WCGNNNNNNNCGW 1 cut(s) 132
PctI GAATGC 1 cut(s) 152
PfeI GAWTC 9 cut(s) 177, 201, 206, 224, 265, 395, 697, 996, 1061
PflMI CCANNNNNTGG 1 cut(s) 313
PleI GAGTC 4 cut(s) 139, 145, 499, 673
PpsI GAGTC 4 cut(s) 139, 145, 499, 673
PsiI TTATAA 1 cut(s) 450
Psp6I CCWGG 5 cut(s) 467, 497, 743, 811, 984
PspGI CCWGG 5 cut(s) 467, 497, 743, 811, 984
PspN4I GGNNCC 3 cut(s) 61, 466, 711
PspPI GGNCC 1 cut(s) 476
PstI CTGCAG 1 cut(s) 25
PstNI CAGNNNCTG 1 cut(s) 568
PsuI RGATCY 3 cut(s) 59, 320, 375
PvuII CAGCTG 1 cut(s) 26
RsaI GTAC 2 cut(s) 70, 749
RsaNI GTAC 2 cut(s) 69, 748
RseI CAYNNNNRTG 1 cut(s) 942
SacII CCGCGG 1 cut(s) 540
SaqAI TTAA 1 cut(s) 738
Sau3AI GATC 8 cut(s) 11, 59, 320, 358, 375, 865, 976, 1159
Sau96I GGNCC 1 cut(s) 476
SchI GAGTC 4 cut(s) 140, 146, 499, 674
ScrFI CCNGG 5 cut(s) 469, 499, 745, 813, 986
SduI GDGCHC 2 cut(s) 625, 1075
SexAI ACCWGGT 1 cut(s) 811
SfaNI GCATC 6 cut(s) 21, 270, 634, 804, 910, 1165
SfcI CTRYAG 2 cut(s) 21, 885
Sfr303I CCGCGG 1 cut(s) 540
SfuI TTCGAA 2 cut(s) 156, 1046
SgrBI CCGCGG 1 cut(s) 540
SmiMI CAYNNNNRTG 1 cut(s) 942
Sse9I AATT 7 cut(s) 39, 250, 386, 892, 972, 990, 1105
SsiI CCGC 5 cut(s) 34, 493, 537, 539, 618
SspMI CTAG 2 cut(s) 875, 1122
StyD4I CCNGG 5 cut(s) 467, 497, 743, 811, 984
TaaI ACNGT 2 cut(s) 1080, 1087
TaiI ACGT 2 cut(s) 191, 773
TaqI TCGA 8 cut(s) 126, 156, 173, 193, 204, 209, 679, 1046
TasI AATT 7 cut(s) 39, 250, 386, 892, 972, 990, 1105
TauI GCSGC 4 cut(s) 37, 495, 539, 542
TfiI GAWTC 9 cut(s) 177, 201, 206, 224, 265, 395, 697, 996, 1061
Tru1I TTAA 1 cut(s) 738
Tru9I TTAA 1 cut(s) 738
TscAI CASTG 3 cut(s) 573, 944, 1083
TseFI GTSAC 1 cut(s) 1007
TseI GCWGC 7 cut(s) 23, 74, 240, 351, 404, 458, 542
Tsp45I GTSAC 1 cut(s) 1007
TspDTI ATGAA 4 cut(s) 861, 1074, 1185, 1215
TspRI CASTG 3 cut(s) 573, 944, 1083
Van91I CCANNNNNTGG 1 cut(s) 313
XapI RAATTY 1 cut(s) 39
XmiI GTMKAC 1 cut(s) 1036
XspI CTAG 2 cut(s) 875, 1122
Zsp2I ATGCAT 1 cut(s) 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.