Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0004973

Physical Location & Seq

Genomic Coordinates Reverse (-)

14883566 .. 14884789

Gene Structure 1224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G008810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGGATGGATCGTGGACTGCAACTGTGATGCGGCGAATTCACGAGCGCGTAGTTGGATCCAGCCGTACTGCTGCTATCTCCTCCACCAGTCATGTGTGGCTTCTCGGCGTGTGCTATAAGTTCGATGAGTCCGAGTCCTCTCCACTTGCATTCGAACACGATTTTTCGTCGAGAATCTTGATGACGTATCGAAGAGGATTCGATTCGATTGAGGGTGGGGATTCCAAGTGTTTTAGCAGCGATGTGAATTGGGGGTGTATGATTCGGAGCAGTCAGATGCTCGTGGCTCAGGCATTGCTTTTCCACAGGTTGGGAAGATCTTGGAGGAGACCTCTGGATAAGTCTTGCAGCTTGGATCAAGAGTGTGTTGAGATCTTGCGTCAATTTGGTGATTCCGAAGCTGCGGCTTTCTCCATCCACAATCTGATTGAGGCTGGCAAGGCTTATAACCTTGCTGCCGGTTCCTGGGTTGGCCCTTATGCTATGTGCCGCTCCTGGGAGACTCTTGTGTGCAAGCAGAGGGAGGCCGAGGCCGCGGCAGCTCAGGAGCTTGATGACCAGCCACTGCCGATGGCTGTTTATATTGTTTCTGGAGACGAAAATGGGGAGAGAGGCGGTGCTCCGGTTGTGTGTGTTGAAGATGCATTTAGACATTGTTCAGAGTTTTCGAGAGGTCGAGTTGATTGGACGCCGATTCTTTTGCTGGTTCCTCTGGTTCTTGGACTTGAAGAACTCAATCCCAGGTACATTCCATCCTTGCGAGCTACGTTTACCTTTCCTCAGAGTGTTGGCATCATGGGTGGCAGACCTGGTGTATCAACTTACATTATTGGAGTGCAAGATGAAAATGCAATTTACCTTGATCCACATCTAGTTCAGCCTGTAGTCAATTTGAGTAGTAATGATTTAGATAGTGATGCTACTTCTTCTTACCACTGCAATGTTATACGCCACATTCCTTTAGATACAATTGATCCATCCCTGGCAATTGGATTCTATTGCCGTGACAAAGATGATTTTGATGATTTTTGTCTACGAGCTTCGAAGCTGGCTGATGAATCAAATGGTGCTCCACTGTTTACTGTGAGTGCTGAAACACATAATTTGTCCAAGCCGCCTAGCCAGAGTGATGATGATTTGGGTGATAATGGTGGCAATCAAAACAATGAAGATGCAGATGGAGATGGAAGCGCACATGAAGAAGATGATTGGCAACTCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000422 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006497 GO:0006501 GO:0006508 GO:0006605 GO:0006612 GO:0006807 GO:0006810 GO:0006886 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008104 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009058 GO:0009059 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0016236 GO:0016787 GO:0018410 GO:0019538 GO:0022411 GO:0022607 GO:0033036 GO:0034613 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042886 GO:0043170 GO:0043412 GO:0043687 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051697 GO:0061726 GO:0061919 GO:0070011 GO:0070727 GO:0070925 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072657 GO:0090150 GO:0140096 GO:1901564 GO:1901566 GO:1901576 GO:1903008 GO:1905037

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 map04136 map04138 map04140

Pfam Domains

Protein Families

Peptidase_C54

Protein Analysis

407

Amino Acids

44.87

Weight (kDa)

4.63

Isoelectric Point (pI)

51.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C54	PF03416	50 - 344	2e-89	Peptidase C54 catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004973)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44140 AT2G44140 AT2G44140 AT2G44140 AT2G44140 AT3G59950 AT3G59950 AT3G59950 AT3G59950 AT3G59950
fragaria_vesca	FvH4_2g06800
malus_domestica	MD00G1055200.v1.1 MD07G1000400.v1.1
prunus_persica	Prupe.2G000200_v2.0.a1 Prupe.2G000200_v2.0.a1 Prupe.2G000200_v2.0.a1 Prupe.2G000200_v2.0.a1 Prupe.2G000200_v2.0.a1
pyrus_communis	pycom07g00040 pycom1315g00010
rosa_chinensis	RchiOBHm_Chr6g0259021
rosa_laevigata	RLG00000014563
rosa_multiflora	Rmu_ssc0000050.1_g000115
rosa_roxburghii	Rroxscaffold_7G00206260
rosa_rugosa	Rorug05G0584900
rosa_samantha	Rh6AG101300 Rh6BG093400 Rh6CG090800 Rh6DG084700
rosa_wichuraiana	Rw6G008810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	447
AccB7I	CCANNNNNTGG	1 cut(s)	310
AccBSI	CCGCTC	1 cut(s)	492
AccI	GTMKAC	1 cut(s)	1033
AccII	CGCG	2 cut(s)	48, 536
AciI	CCGC	7 cut(s)	31, 404, 490, 534, 536, 615, 1115
AclWI	GGATC	6 cut(s)	16, 51, 64, 363, 857, 968
AcsI	RAATTY	1 cut(s)	36
AcyI	GRCGYC	1 cut(s)	689
AfaI	GTAC	2 cut(s)	67, 746
AfiI	CCNNNNNNNGG	3 cut(s)	310, 465, 496
AgsI	TTSAA	2 cut(s)	638, 728
AjnI	CCWGG	5 cut(s)	464, 494, 740, 808, 981
AluBI	AGCT	7 cut(s)	351, 401, 542, 550, 764, 1040, 1048
AluI	AGCT	7 cut(s)	351, 401, 542, 550, 764, 1040, 1048
Alw21I	GWGCWC	2 cut(s)	622, 1072
Alw26I	GTCTC	3 cut(s)	322, 494, 588
AlwI	GGATC	6 cut(s)	16, 51, 64, 363, 857, 968
AlwNI	CAGNNNCTG	1 cut(s)	565
AoxI	GGCC	3 cut(s)	472, 525, 531
ApeKI	GCWGC	6 cut(s)	71, 237, 348, 401, 455, 539
ApoI	RAATTY	1 cut(s)	36
AspLEI	GCGC	2 cut(s)	48, 1193
AspS9I	GGNCC	1 cut(s)	473
AsuHPI	GGTGA	2 cut(s)	401, 1154
AsuII	TTCGAA	2 cut(s)	153, 1043
BamHI	GGATCC	1 cut(s)	56
BauI	CACGAG	2 cut(s)	41, 281
Bbv12I	GWGCWC	2 cut(s)	622, 1072
BbvI	GCAGC	6 cut(s)	58, 249, 360, 388, 442, 551
BccI	CCATC	6 cut(s)	422, 565, 760, 985, 1172, 1178
BceAI	ACGGC	2 cut(s)	48, 987
BcgI	CGANNNNNNTGC	2 cut(s)	682, 716
BciT130I	CCWGG	5 cut(s)	466, 496, 742, 810, 983
BcoDI	GTCTC	3 cut(s)	322, 494, 588
BfaI	CTAG	2 cut(s)	872, 1119
BfmI	CTRYAG	1 cut(s)	882
BglII	AGATCT	2 cut(s)	317, 372
Bme1390I	CCNGG	5 cut(s)	466, 496, 742, 810, 983
BmgT120I	GGNCC	1 cut(s)	473
BmiI	GGNNCC	3 cut(s)	58, 463, 708
BmrFI	CCNGG	5 cut(s)	466, 496, 742, 810, 983
BmsI	GCATC	6 cut(s)	18, 267, 631, 801, 907, 1162
BplI	GAGNNNNNCTC	2 cut(s)	316, 348
BpmI	CTGGAG	1 cut(s)	612
Bpu10I	CCTNAGC	2 cut(s)	288, 543
Bpu14I	TTCGAA	2 cut(s)	153, 1043
BsaBI	GATNNNNATC	1 cut(s)	867
BsaHI	GRCGYC	1 cut(s)	689
BsaI	GGTCTC	1 cut(s)	322
BsaJI	CCNNGG	6 cut(s)	465, 495, 528, 534, 740, 981
BsaWI	WCCGGW	1 cut(s)	622
Bsc4I	CCNNNNNNNGG	3 cut(s)	310, 465, 496
Bse118I	RCCGGY	1 cut(s)	458
Bse1I	ACTGG	1 cut(s)	87
Bse3DI	GCAATG	2 cut(s)	293, 946
Bse8I	GATNNNNATC	1 cut(s)	867
BseBI	CCWGG	5 cut(s)	466, 496, 742, 810, 983
BseDI	CCNNGG	6 cut(s)	465, 495, 528, 534, 740, 981
BseGI	GGATG	4 cut(s)	10, 414, 752, 977
BseJI	GATNNNNATC	1 cut(s)	867
BseLI	CCNNNNNNNGG	3 cut(s)	310, 465, 496
BseMI	GCAATG	2 cut(s)	293, 946
BseMII	CTCAG	3 cut(s)	302, 557, 794
BseNI	ACTGG	1 cut(s)	87
BseRI	GAGGAG	3 cut(s)	70, 340, 1208
BseXI	GCAGC	6 cut(s)	58, 249, 360, 388, 442, 551
Bsh1236I	CGCG	2 cut(s)	48, 536
BshFI	GGCC	3 cut(s)	474, 527, 533
BsiHKAI	GWGCWC	2 cut(s)	622, 1072
BsiSI	CCGG	2 cut(s)	459, 623
BslI	CCNNNNNNNGG	3 cut(s)	310, 465, 496
BsmAI	GTCTC	3 cut(s)	322, 494, 588
BsmBI	CGTCTC	1 cut(s)	588
BsmI	GAATGC	1 cut(s)	149
BsnI	GGCC	3 cut(s)	474, 527, 533
Bso31I	GGTCTC	1 cut(s)	322
Bsp119I	TTCGAA	2 cut(s)	153, 1043
Bsp1286I	GDGCHC	2 cut(s)	622, 1072
Bsp143I	GATC	7 cut(s)	8, 56, 317, 355, 372, 862, 973
BspACI	CCGC	7 cut(s)	31, 404, 490, 534, 536, 615, 1115
BspANI	GGCC	3 cut(s)	474, 527, 533
BspCNI	CTCAG	3 cut(s)	301, 556, 793
BspFNI	CGCG	2 cut(s)	48, 536
BspLI	GGNNCC	3 cut(s)	58, 463, 708
BspPI	GGATC	6 cut(s)	16, 51, 64, 363, 857, 968
BspT104I	TTCGAA	2 cut(s)	153, 1043
BspTNI	GGTCTC	1 cut(s)	322
BsrBI	CCGCTC	1 cut(s)	492
BsrDI	GCAATG	2 cut(s)	293, 946
BsrFI	RCCGGY	1 cut(s)	458
BsrI	ACTGG	1 cut(s)	87
BssAI	RCCGGY	1 cut(s)	458
BssECI	CCNNGG	6 cut(s)	465, 495, 528, 534, 740, 981
BssMI	GATC	7 cut(s)	8, 56, 317, 355, 372, 862, 973
BssNI	GRCGYC	1 cut(s)	689
BssSI	CACGAG	2 cut(s)	41, 281
Bst2BI	CACGAG	2 cut(s)	41, 281
Bst2UI	CCWGG	5 cut(s)	466, 496, 742, 810, 983
Bst4CI	ACNGT	3 cut(s)	25, 1077, 1084
Bst6I	CTCTTC	1 cut(s)	187
BstACI	GRCGYC	1 cut(s)	689
BstBI	TTCGAA	2 cut(s)	153, 1043
BstC8I	GCNNGC	4 cut(s)	436, 515, 762, 1050
BstDEI	CTNAG	3 cut(s)	288, 543, 780
BstDSI	CCRYGG	1 cut(s)	534
BstF5I	GGATG	4 cut(s)	10, 414, 752, 977
BstFNI	CGCG	2 cut(s)	48, 536
BstHHI	GCGC	2 cut(s)	48, 1193
BstKTI	GATC	7 cut(s)	11, 59, 320, 358, 375, 865, 976
BstMAI	GTCTC	3 cut(s)	322, 494, 588
BstMBI	GATC	7 cut(s)	8, 56, 317, 355, 372, 862, 973
BstMWI	GCNNNNNNNGC	3 cut(s)	440, 533, 539
BstNI	CCWGG	5 cut(s)	466, 496, 742, 810, 983
BstSCI	CCNGG	5 cut(s)	464, 494, 740, 808, 981
BstSFI	CTRYAG	1 cut(s)	882
BstUI	CGCG	2 cut(s)	48, 536
BstV1I	GCAGC	6 cut(s)	58, 249, 360, 388, 442, 551
BstX2I	RGATCY	3 cut(s)	56, 317, 372
BstYI	RGATCY	3 cut(s)	56, 317, 372
BsuRI	GGCC	3 cut(s)	474, 527, 533
BtgI	CCRYGG	1 cut(s)	534
BtgZI	GCGATG	1 cut(s)	255
BtsCI	GGATG	4 cut(s)	10, 414, 752, 977
BtsI	GCAGTG	2 cut(s)	563, 934
BtsIMutI	CAGTG	3 cut(s)	563, 934, 1073
Cac8I	GCNNGC	4 cut(s)	436, 515, 762, 1050
CaiI	CAGNNNCTG	1 cut(s)	565
CfoI	GCGC	2 cut(s)	48, 1193
Cfr10I	RCCGGY	1 cut(s)	458
Cfr13I	GGNCC	1 cut(s)	473
Cfr42I	CCGCGG	1 cut(s)	537
CseI	GACGC	2 cut(s)	368, 697
CsiI	ACCWGGT	1 cut(s)	808
Csp6I	GTAC	2 cut(s)	66, 745
CviAII	CATG	3 cut(s)	92, 796, 1196
CviQI	GTAC	2 cut(s)	66, 745
DdeI	CTNAG	3 cut(s)	288, 543, 780
DpnI	GATC	7 cut(s)	10, 58, 319, 357, 374, 864, 975
DpnII	GATC	7 cut(s)	8, 56, 317, 355, 372, 862, 973
Eam1104I	CTCTTC	1 cut(s)	187
EarI	CTCTTC	1 cut(s)	187
Eco31I	GGTCTC	1 cut(s)	322
EcoRI	GAATTC	1 cut(s)	36
EcoRII	CCWGG	5 cut(s)	464, 494, 740, 808, 981
EcoT22I	ATGCAT	1 cut(s)	646
Esp3I	CGTCTC	1 cut(s)	588
FaeI	CATG	3 cut(s)	95, 799, 1199
FatI	CATG	3 cut(s)	91, 795, 1195
FblI	GTMKAC	1 cut(s)	1033
FokI	GGATG	4 cut(s)	17, 401, 739, 964
FspBI	CTAG	2 cut(s)	872, 1119
GlaI	GCGC	2 cut(s)	47, 1192
GsuI	CTGGAG	1 cut(s)	612
HaeIII	GGCC	3 cut(s)	474, 527, 533
HapII	CCGG	2 cut(s)	459, 623
HgaI	GACGC	2 cut(s)	368, 697
HhaI	GCGC	2 cut(s)	48, 1193
Hin1I	GRCGYC	1 cut(s)	689
Hin1II	CATG	3 cut(s)	95, 799, 1199
Hin6I	GCGC	2 cut(s)	46, 1191
HinP1I	GCGC	2 cut(s)	46, 1191
HpaII	CCGG	2 cut(s)	459, 623
HphI	GGTGA	2 cut(s)	401, 1154
Hpy166II	GTNNAC	4 cut(s)	15, 771, 1034, 1080
Hpy188I	TCNGA	8 cut(s)	133, 267, 276, 397, 426, 661, 783, 1223
Hpy188III	TCNNGA	8 cut(s)	41, 171, 178, 335, 359, 545, 591, 669
Hpy8I	GTNNAC	4 cut(s)	15, 771, 1034, 1080
Hpy99I	CGWCG	1 cut(s)	172
HpyCH4III	ACNGT	3 cut(s)	25, 1077, 1084
HpyCH4IV	ACGT	2 cut(s)	185, 767
HpyCH4V	TGCA	9 cut(s)	20, 149, 348, 513, 644, 838, 851, 939, 1175
HpyF10VI	GCNNNNNNNGC	3 cut(s)	440, 533, 539
HpyF3I	CTNAG	3 cut(s)	288, 543, 780
HpySE526I	ACGT	2 cut(s)	185, 767
Hsp92I	GRCGYC	1 cut(s)	689
Hsp92II	CATG	3 cut(s)	95, 799, 1199
HspAI	GCGC	2 cut(s)	46, 1191
KspI	CCGCGG	1 cut(s)	537
Kzo9I	GATC	7 cut(s)	8, 56, 317, 355, 372, 862, 973
LmnI	GCTCC	5 cut(s)	267, 497, 547, 625, 1075
Lsp1109I	GCAGC	6 cut(s)	58, 249, 360, 388, 442, 551
LweI	GCATC	6 cut(s)	18, 267, 631, 801, 907, 1162
MabI	ACCWGGT	1 cut(s)	808
MaeI	CTAG	2 cut(s)	872, 1119
MaeII	ACGT	2 cut(s)	185, 767
MaeIII	GTNAC	1 cut(s)	1004
MalI	GATC	7 cut(s)	10, 58, 319, 357, 374, 864, 975
MbiI	CCGCTC	1 cut(s)	492
MboI	GATC	7 cut(s)	8, 56, 317, 355, 372, 862, 973
MboII	GAAGA	8 cut(s)	204, 327, 650, 740, 918, 1181, 1211, 1214
MfeI	CAATTG	2 cut(s)	969, 987
MflI	RGATCY	3 cut(s)	56, 317, 372
MhlI	GDGCHC	2 cut(s)	622, 1072
MluCI	AATT	8 cut(s)	36, 247, 383, 852, 889, 969, 987, 1102
MlyI	GAGTC	3 cut(s)	137, 143, 496
MmeI	TCCRAC	1 cut(s)	34
Mph1103I	ATGCAT	1 cut(s)	646
MslI	CAYNNNNRTG	1 cut(s)	939
MspA1I	CMGCKG	1 cut(s)	536
MspI	CCGG	2 cut(s)	459, 623
MspR9I	CCNGG	5 cut(s)	466, 496, 742, 810, 983
MunI	CAATTG	2 cut(s)	969, 987
Mva1269I	GAATGC	1 cut(s)	149
MvaI	CCWGG	5 cut(s)	466, 496, 742, 810, 983
MvnI	CGCG	2 cut(s)	48, 536
MwoI	GCNNNNNNNGC	3 cut(s)	440, 533, 539
NdeII	GATC	7 cut(s)	8, 56, 317, 355, 372, 862, 973
NlaIII	CATG	3 cut(s)	95, 799, 1199
NlaIV	GGNNCC	3 cut(s)	58, 463, 708
NmeAIII	GCCGAG	2 cut(s)	84, 553
NmuCI	GTSAC	1 cut(s)	1004
NsiI	ATGCAT	1 cut(s)	646
NspV	TTCGAA	2 cut(s)	153, 1043
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PctI	GAATGC	1 cut(s)	149
PfeI	GAWTC	9 cut(s)	174, 198, 203, 221, 262, 392, 694, 993, 1058
PflMI	CCANNNNNTGG	1 cut(s)	310
PleI	GAGTC	3 cut(s)	136, 142, 496
PpsI	GAGTC	3 cut(s)	136, 142, 496
PsiI	TTATAA	1 cut(s)	447
Psp6I	CCWGG	5 cut(s)	464, 494, 740, 808, 981
PspGI	CCWGG	5 cut(s)	464, 494, 740, 808, 981
PspN4I	GGNNCC	3 cut(s)	58, 463, 708
PspPI	GGNCC	1 cut(s)	473
PstNI	CAGNNNCTG	1 cut(s)	565
PsuI	RGATCY	3 cut(s)	56, 317, 372
RsaI	GTAC	2 cut(s)	67, 746
RsaNI	GTAC	2 cut(s)	66, 745
RseI	CAYNNNNRTG	1 cut(s)	939
SacII	CCGCGG	1 cut(s)	537
Sau3AI	GATC	7 cut(s)	8, 56, 317, 355, 372, 862, 973
Sau96I	GGNCC	1 cut(s)	473
SchI	GAGTC	3 cut(s)	137, 143, 496
ScrFI	CCNGG	5 cut(s)	466, 496, 742, 810, 983
SduI	GDGCHC	2 cut(s)	622, 1072
SexAI	ACCWGGT	1 cut(s)	808
SfaNI	GCATC	6 cut(s)	18, 267, 631, 801, 907, 1162
SfcI	CTRYAG	1 cut(s)	882
Sfr303I	CCGCGG	1 cut(s)	537
SfuI	TTCGAA	2 cut(s)	153, 1043
SgrBI	CCGCGG	1 cut(s)	537
SmiMI	CAYNNNNRTG	1 cut(s)	939
Sse9I	AATT	8 cut(s)	36, 247, 383, 852, 889, 969, 987, 1102
SsiI	CCGC	7 cut(s)	31, 404, 490, 534, 536, 615, 1115
SspMI	CTAG	2 cut(s)	872, 1119
StyD4I	CCNGG	5 cut(s)	464, 494, 740, 808, 981
TaaI	ACNGT	3 cut(s)	25, 1077, 1084
TaiI	ACGT	2 cut(s)	188, 770
TaqI	TCGA	9 cut(s)	123, 153, 170, 190, 201, 206, 668, 676, 1043
TasI	AATT	8 cut(s)	36, 247, 383, 852, 889, 969, 987, 1102
TauI	GCSGC	6 cut(s)	34, 407, 492, 536, 539, 1117
TfiI	GAWTC	9 cut(s)	174, 198, 203, 221, 262, 392, 694, 993, 1058
TscAI	CASTG	3 cut(s)	570, 941, 1080
TseFI	GTSAC	1 cut(s)	1004
TseI	GCWGC	6 cut(s)	71, 237, 348, 401, 455, 539
Tsp45I	GTSAC	1 cut(s)	1004
TspDTI	ATGAA	4 cut(s)	858, 1071, 1182, 1212
TspRI	CASTG	3 cut(s)	570, 941, 1080
Van91I	CCANNNNNTGG	1 cut(s)	310
XapI	RAATTY	1 cut(s)	36
XmiI	GTMKAC	1 cut(s)	1033
XspI	CTAG	2 cut(s)	872, 1119
Zsp2I	ATGCAT	1 cut(s)	646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.