Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000050.1

Orthogroup ID

OG0004973

Physical Location & Seq

Genomic Coordinates Forward (+)

525825 .. 527051

Gene Structure 1227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000050.1_g000115.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

atgatggatggatcgtggactgcaactgtgatgcggcgaattcacgagcgcgtagttggatccagccgtactgctgctatctcctccaccagtcatgtatggcttctcggcgtgtgctataagttcgatgagtccgagtcctctccacttgcattcgaacacgatttttcgtcgagaatcttgatgacgtatcgaagaggattcgattcgattgagggtggggattccaagtgttttagcagcgatgtgaattgggggtgtatgattcggagcagtcagatgctcgtggctcaggcattgcttttccacaggttgggaagatcttggaggagacctctggacaagtcttgcagcttggatcaagagtgtgttgagatcttgcgtcaatttggtgattccgaagctgcggctttctccatccacaatctgattgaggctggcaaggcttataaccttgctgccggttcctgggttggcccttatgctatgtgccgctcctgggagactcttgtgtgcaagcagagggaggccgaggccgcggcagctcaggagcttgatgaccagccactgccgatggctgtttatattgtttctggagacgaaaatggggagagaggcggtgctccggttgtgtgtgttgaagatgcatttagacattgttcagagttttcgagaggtcgagttgattggacgccgattcttttgctggttcctctggttcttggacttgaagaactcaatcccaggtacattccatccttgcgagctacgtttacctttcctcagagtgttggcatcatgggtggcagacctggtgtatcaacttacattattggagtgcaagatgaaaatgcaatttaccttgatccacatctagttcagcctgtagtcaatttgagtagtaatgatttagatagtgatgctacttcatcttaccactgcaatgttatacgccacattcctttagatacaattgatccatccctggcaattggattctattgccgtgacaaagatgattttgatgatttttgtctacgagcttcgaagctggctgatgaatcaaatggtgctccactgtttactgtgagtgctgaaacacataatttgtccaagccgcctagccagagtgatgatgatttgggtgataatggtggcaatcaaaacaatgaagatgcagatggagatggaagcgcacatgaagaagatgattggcaactcctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000422 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006497 GO:0006501 GO:0006508 GO:0006605 GO:0006612 GO:0006807 GO:0006810 GO:0006886 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008104 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009058 GO:0009059 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0016236 GO:0016787 GO:0018410 GO:0019538 GO:0022411 GO:0022607 GO:0033036 GO:0034613 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042886 GO:0043170 GO:0043412 GO:0043687 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051697 GO:0061726 GO:0061919 GO:0070011 GO:0070727 GO:0070925 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072657 GO:0090150 GO:0140096 GO:1901564 GO:1901566 GO:1901576 GO:1903008 GO:1905037

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 map04136 map04138 map04140

Pfam Domains

Protein Families

Peptidase_C54

Protein Analysis

408

Amino Acids

45.0

Weight (kDa)

4.63

Isoelectric Point (pI)

51.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004973)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44140 AT2G44140 AT2G44140 AT2G44140 AT2G44140 AT3G59950 AT3G59950 AT3G59950 AT3G59950 AT3G59950
fragaria_vesca	FvH4_2g06800
malus_domestica	MD00G1055200.v1.1 MD07G1000400.v1.1
prunus_persica	Prupe.2G000200_v2.0.a1 Prupe.2G000200_v2.0.a1 Prupe.2G000200_v2.0.a1 Prupe.2G000200_v2.0.a1 Prupe.2G000200_v2.0.a1
pyrus_communis	pycom07g00040 pycom1315g00010
rosa_chinensis	RchiOBHm_Chr6g0259021
rosa_laevigata	RLG00000014563
rosa_multiflora	Rmu_ssc0000050.1_g000115
rosa_roxburghii	Rroxscaffold_7G00206260
rosa_rugosa	Rorug05G0584900
rosa_samantha	Rh6AG101300 Rh6BG093400 Rh6CG090800 Rh6DG084700
rosa_wichuraiana	Rw6G008810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	450
AccB7I	CCANNNNNTGG	1 cut(s)	313
AccBSI	CCGCTC	1 cut(s)	495
AccI	GTMKAC	1 cut(s)	1036
AccII	CGCG	2 cut(s)	51, 539
AciI	CCGC	7 cut(s)	34, 407, 493, 537, 539, 618, 1118
AclWI	GGATC	6 cut(s)	19, 54, 67, 366, 860, 971
AcsI	RAATTY	1 cut(s)	39
AcyI	GRCGYC	1 cut(s)	692
AfaI	GTAC	2 cut(s)	70, 749
AfiI	CCNNNNNNNGG	3 cut(s)	313, 468, 499
AgsI	TTSAA	2 cut(s)	641, 731
AjnI	CCWGG	5 cut(s)	467, 497, 743, 811, 984
AluBI	AGCT	7 cut(s)	354, 404, 545, 553, 767, 1043, 1051
AluI	AGCT	7 cut(s)	354, 404, 545, 553, 767, 1043, 1051
Alw21I	GWGCWC	2 cut(s)	625, 1075
Alw26I	GTCTC	3 cut(s)	325, 497, 591
AlwI	GGATC	6 cut(s)	19, 54, 67, 366, 860, 971
AlwNI	CAGNNNCTG	1 cut(s)	568
AoxI	GGCC	3 cut(s)	475, 528, 534
ApeKI	GCWGC	6 cut(s)	74, 240, 351, 404, 458, 542
ApoI	RAATTY	1 cut(s)	39
AspLEI	GCGC	2 cut(s)	51, 1196
AspS9I	GGNCC	1 cut(s)	476
AsuHPI	GGTGA	2 cut(s)	404, 1157
AsuII	TTCGAA	2 cut(s)	156, 1046
BamHI	GGATCC	1 cut(s)	59
BauI	CACGAG	2 cut(s)	44, 284
Bbv12I	GWGCWC	2 cut(s)	625, 1075
BbvI	GCAGC	6 cut(s)	61, 252, 363, 391, 445, 554
BccI	CCATC	7 cut(s)	2, 425, 568, 763, 988, 1175, 1181
BceAI	ACGGC	2 cut(s)	51, 990
BcgI	CGANNNNNNTGC	2 cut(s)	685, 719
BciT130I	CCWGG	5 cut(s)	469, 499, 745, 813, 986
BcoDI	GTCTC	3 cut(s)	325, 497, 591
BfaI	CTAG	2 cut(s)	875, 1122
BfmI	CTRYAG	1 cut(s)	885
BglII	AGATCT	2 cut(s)	320, 375
Bme1390I	CCNGG	5 cut(s)	469, 499, 745, 813, 986
BmgT120I	GGNCC	1 cut(s)	476
BmiI	GGNNCC	3 cut(s)	61, 466, 711
BmrFI	CCNGG	5 cut(s)	469, 499, 745, 813, 986
BmsI	GCATC	6 cut(s)	21, 270, 634, 804, 910, 1165
BplI	GAGNNNNNCTC	2 cut(s)	319, 351
BpmI	CTGGAG	1 cut(s)	615
Bpu10I	CCTNAGC	2 cut(s)	291, 546
Bpu14I	TTCGAA	2 cut(s)	156, 1046
BsaBI	GATNNNNATC	1 cut(s)	870
BsaHI	GRCGYC	1 cut(s)	692
BsaI	GGTCTC	1 cut(s)	325
BsaJI	CCNNGG	6 cut(s)	468, 498, 531, 537, 743, 984
BsaWI	WCCGGW	1 cut(s)	625
Bsc4I	CCNNNNNNNGG	3 cut(s)	313, 468, 499
Bse118I	RCCGGY	1 cut(s)	461
Bse1I	ACTGG	1 cut(s)	90
Bse3DI	GCAATG	2 cut(s)	296, 949
Bse8I	GATNNNNATC	1 cut(s)	870
BseBI	CCWGG	5 cut(s)	469, 499, 745, 813, 986
BseDI	CCNNGG	6 cut(s)	468, 498, 531, 537, 743, 984
BseGI	GGATG	4 cut(s)	13, 417, 755, 980
BseJI	GATNNNNATC	1 cut(s)	870
BseLI	CCNNNNNNNGG	3 cut(s)	313, 468, 499
BseMI	GCAATG	2 cut(s)	296, 949
BseMII	CTCAG	3 cut(s)	305, 560, 797
BseNI	ACTGG	1 cut(s)	90
BseRI	GAGGAG	3 cut(s)	73, 343, 1211
BseXI	GCAGC	6 cut(s)	61, 252, 363, 391, 445, 554
Bsh1236I	CGCG	2 cut(s)	51, 539
BshFI	GGCC	3 cut(s)	477, 530, 536
BsiHKAI	GWGCWC	2 cut(s)	625, 1075
BsiSI	CCGG	2 cut(s)	462, 626
BslI	CCNNNNNNNGG	3 cut(s)	313, 468, 499
BsmAI	GTCTC	3 cut(s)	325, 497, 591
BsmBI	CGTCTC	1 cut(s)	591
BsmI	GAATGC	1 cut(s)	152
BsnI	GGCC	3 cut(s)	477, 530, 536
Bso31I	GGTCTC	1 cut(s)	325
Bsp119I	TTCGAA	2 cut(s)	156, 1046
Bsp1286I	GDGCHC	2 cut(s)	625, 1075
Bsp143I	GATC	7 cut(s)	11, 59, 320, 358, 375, 865, 976
BspACI	CCGC	7 cut(s)	34, 407, 493, 537, 539, 618, 1118
BspANI	GGCC	3 cut(s)	477, 530, 536
BspCNI	CTCAG	3 cut(s)	304, 559, 796
BspFNI	CGCG	2 cut(s)	51, 539
BspLI	GGNNCC	3 cut(s)	61, 466, 711
BspPI	GGATC	6 cut(s)	19, 54, 67, 366, 860, 971
BspT104I	TTCGAA	2 cut(s)	156, 1046
BspTNI	GGTCTC	1 cut(s)	325
BsrBI	CCGCTC	1 cut(s)	495
BsrDI	GCAATG	2 cut(s)	296, 949
BsrFI	RCCGGY	1 cut(s)	461
BsrI	ACTGG	1 cut(s)	90
BssAI	RCCGGY	1 cut(s)	461
BssECI	CCNNGG	6 cut(s)	468, 498, 531, 537, 743, 984
BssMI	GATC	7 cut(s)	11, 59, 320, 358, 375, 865, 976
BssNI	GRCGYC	1 cut(s)	692
BssSI	CACGAG	2 cut(s)	44, 284
Bst2BI	CACGAG	2 cut(s)	44, 284
Bst2UI	CCWGG	5 cut(s)	469, 499, 745, 813, 986
Bst4CI	ACNGT	3 cut(s)	28, 1080, 1087
Bst6I	CTCTTC	1 cut(s)	190
BstACI	GRCGYC	1 cut(s)	692
BstBI	TTCGAA	2 cut(s)	156, 1046
BstC8I	GCNNGC	4 cut(s)	439, 518, 765, 1053
BstDEI	CTNAG	3 cut(s)	291, 546, 783
BstDSI	CCRYGG	1 cut(s)	537
BstF5I	GGATG	4 cut(s)	13, 417, 755, 980
BstFNI	CGCG	2 cut(s)	51, 539
BstHHI	GCGC	2 cut(s)	51, 1196
BstKTI	GATC	7 cut(s)	14, 62, 323, 361, 378, 868, 979
BstMAI	GTCTC	3 cut(s)	325, 497, 591
BstMBI	GATC	7 cut(s)	11, 59, 320, 358, 375, 865, 976
BstMWI	GCNNNNNNNGC	3 cut(s)	443, 536, 542
BstNI	CCWGG	5 cut(s)	469, 499, 745, 813, 986
BstSCI	CCNGG	5 cut(s)	467, 497, 743, 811, 984
BstSFI	CTRYAG	1 cut(s)	885
BstUI	CGCG	2 cut(s)	51, 539
BstV1I	GCAGC	6 cut(s)	61, 252, 363, 391, 445, 554
BstX2I	RGATCY	3 cut(s)	59, 320, 375
BstYI	RGATCY	3 cut(s)	59, 320, 375
BsuRI	GGCC	3 cut(s)	477, 530, 536
BtgI	CCRYGG	1 cut(s)	537
BtgZI	GCGATG	1 cut(s)	258
BtsCI	GGATG	4 cut(s)	13, 417, 755, 980
BtsI	GCAGTG	2 cut(s)	566, 937
BtsIMutI	CAGTG	3 cut(s)	566, 937, 1076
Cac8I	GCNNGC	4 cut(s)	439, 518, 765, 1053
CaiI	CAGNNNCTG	1 cut(s)	568
CfoI	GCGC	2 cut(s)	51, 1196
Cfr10I	RCCGGY	1 cut(s)	461
Cfr13I	GGNCC	1 cut(s)	476
Cfr42I	CCGCGG	1 cut(s)	540
CseI	GACGC	2 cut(s)	371, 700
CsiI	ACCWGGT	1 cut(s)	811
Csp6I	GTAC	2 cut(s)	69, 748
CviAII	CATG	3 cut(s)	95, 799, 1199
CviQI	GTAC	2 cut(s)	69, 748
DdeI	CTNAG	3 cut(s)	291, 546, 783
DpnI	GATC	7 cut(s)	13, 61, 322, 360, 377, 867, 978
DpnII	GATC	7 cut(s)	11, 59, 320, 358, 375, 865, 976
Eam1104I	CTCTTC	1 cut(s)	190
EarI	CTCTTC	1 cut(s)	190
Eco31I	GGTCTC	1 cut(s)	325
EcoRI	GAATTC	1 cut(s)	39
EcoRII	CCWGG	5 cut(s)	467, 497, 743, 811, 984
EcoT22I	ATGCAT	1 cut(s)	649
Esp3I	CGTCTC	1 cut(s)	591
FaeI	CATG	3 cut(s)	98, 802, 1202
FatI	CATG	3 cut(s)	94, 798, 1198
FblI	GTMKAC	1 cut(s)	1036
FokI	GGATG	4 cut(s)	20, 404, 742, 967
FspBI	CTAG	2 cut(s)	875, 1122
GlaI	GCGC	2 cut(s)	50, 1195
GsuI	CTGGAG	1 cut(s)	615
HaeIII	GGCC	3 cut(s)	477, 530, 536
HapII	CCGG	2 cut(s)	462, 626
HgaI	GACGC	2 cut(s)	371, 700
HhaI	GCGC	2 cut(s)	51, 1196
Hin1I	GRCGYC	1 cut(s)	692
Hin1II	CATG	3 cut(s)	98, 802, 1202
Hin6I	GCGC	2 cut(s)	49, 1194
HinP1I	GCGC	2 cut(s)	49, 1194
HpaII	CCGG	2 cut(s)	462, 626
HphI	GGTGA	2 cut(s)	404, 1157
Hpy166II	GTNNAC	4 cut(s)	18, 774, 1037, 1083
Hpy188I	TCNGA	8 cut(s)	136, 270, 279, 400, 429, 664, 786, 1226
Hpy188III	TCNNGA	8 cut(s)	44, 174, 181, 338, 362, 548, 594, 672
Hpy8I	GTNNAC	4 cut(s)	18, 774, 1037, 1083
Hpy99I	CGWCG	1 cut(s)	175
HpyCH4III	ACNGT	3 cut(s)	28, 1080, 1087
HpyCH4IV	ACGT	2 cut(s)	188, 770
HpyCH4V	TGCA	9 cut(s)	23, 152, 351, 516, 647, 841, 854, 942, 1178
HpyF10VI	GCNNNNNNNGC	3 cut(s)	443, 536, 542
HpyF3I	CTNAG	3 cut(s)	291, 546, 783
HpySE526I	ACGT	2 cut(s)	188, 770
Hsp92I	GRCGYC	1 cut(s)	692
Hsp92II	CATG	3 cut(s)	98, 802, 1202
HspAI	GCGC	2 cut(s)	49, 1194
KspI	CCGCGG	1 cut(s)	540
Kzo9I	GATC	7 cut(s)	11, 59, 320, 358, 375, 865, 976
LmnI	GCTCC	5 cut(s)	270, 500, 550, 628, 1078
Lsp1109I	GCAGC	6 cut(s)	61, 252, 363, 391, 445, 554
LweI	GCATC	6 cut(s)	21, 270, 634, 804, 910, 1165
MabI	ACCWGGT	1 cut(s)	811
MaeI	CTAG	2 cut(s)	875, 1122
MaeII	ACGT	2 cut(s)	188, 770
MaeIII	GTNAC	1 cut(s)	1007
MalI	GATC	7 cut(s)	13, 61, 322, 360, 377, 867, 978
MbiI	CCGCTC	1 cut(s)	495
MboI	GATC	7 cut(s)	11, 59, 320, 358, 375, 865, 976
MboII	GAAGA	7 cut(s)	207, 330, 653, 743, 1184, 1214, 1217
MfeI	CAATTG	2 cut(s)	972, 990
MflI	RGATCY	3 cut(s)	59, 320, 375
MhlI	GDGCHC	2 cut(s)	625, 1075
MluCI	AATT	8 cut(s)	39, 250, 386, 855, 892, 972, 990, 1105
MlyI	GAGTC	3 cut(s)	140, 146, 499
MmeI	TCCRAC	1 cut(s)	37
Mph1103I	ATGCAT	1 cut(s)	649
MslI	CAYNNNNRTG	1 cut(s)	942
MspA1I	CMGCKG	1 cut(s)	539
MspI	CCGG	2 cut(s)	462, 626
MspR9I	CCNGG	5 cut(s)	469, 499, 745, 813, 986
MunI	CAATTG	2 cut(s)	972, 990
Mva1269I	GAATGC	1 cut(s)	152
MvaI	CCWGG	5 cut(s)	469, 499, 745, 813, 986
MvnI	CGCG	2 cut(s)	51, 539
MwoI	GCNNNNNNNGC	3 cut(s)	443, 536, 542
NdeII	GATC	7 cut(s)	11, 59, 320, 358, 375, 865, 976
NlaIII	CATG	3 cut(s)	98, 802, 1202
NlaIV	GGNNCC	3 cut(s)	61, 466, 711
NmeAIII	GCCGAG	2 cut(s)	87, 556
NmuCI	GTSAC	1 cut(s)	1007
NsiI	ATGCAT	1 cut(s)	649
NspV	TTCGAA	2 cut(s)	156, 1046
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PctI	GAATGC	1 cut(s)	152
PfeI	GAWTC	9 cut(s)	177, 201, 206, 224, 265, 395, 697, 996, 1061
PflMI	CCANNNNNTGG	1 cut(s)	313
PleI	GAGTC	3 cut(s)	139, 145, 499
PpsI	GAGTC	3 cut(s)	139, 145, 499
PsiI	TTATAA	1 cut(s)	450
Psp6I	CCWGG	5 cut(s)	467, 497, 743, 811, 984
PspGI	CCWGG	5 cut(s)	467, 497, 743, 811, 984
PspN4I	GGNNCC	3 cut(s)	61, 466, 711
PspPI	GGNCC	1 cut(s)	476
PstNI	CAGNNNCTG	1 cut(s)	568
PsuI	RGATCY	3 cut(s)	59, 320, 375
RsaI	GTAC	2 cut(s)	70, 749
RsaNI	GTAC	2 cut(s)	69, 748
RseI	CAYNNNNRTG	1 cut(s)	942
SacII	CCGCGG	1 cut(s)	540
Sau3AI	GATC	7 cut(s)	11, 59, 320, 358, 375, 865, 976
Sau96I	GGNCC	1 cut(s)	476
SchI	GAGTC	3 cut(s)	140, 146, 499
ScrFI	CCNGG	5 cut(s)	469, 499, 745, 813, 986
SduI	GDGCHC	2 cut(s)	625, 1075
SexAI	ACCWGGT	1 cut(s)	811
SfaNI	GCATC	6 cut(s)	21, 270, 634, 804, 910, 1165
SfcI	CTRYAG	1 cut(s)	885
Sfr303I	CCGCGG	1 cut(s)	540
SfuI	TTCGAA	2 cut(s)	156, 1046
SgrBI	CCGCGG	1 cut(s)	540
SmiMI	CAYNNNNRTG	1 cut(s)	942
Sse9I	AATT	8 cut(s)	39, 250, 386, 855, 892, 972, 990, 1105
SsiI	CCGC	7 cut(s)	34, 407, 493, 537, 539, 618, 1118
SspMI	CTAG	2 cut(s)	875, 1122
StyD4I	CCNGG	5 cut(s)	467, 497, 743, 811, 984
TaaI	ACNGT	3 cut(s)	28, 1080, 1087
TaiI	ACGT	2 cut(s)	191, 773
TaqI	TCGA	9 cut(s)	126, 156, 173, 193, 204, 209, 671, 679, 1046
TasI	AATT	8 cut(s)	39, 250, 386, 855, 892, 972, 990, 1105
TauI	GCSGC	6 cut(s)	37, 410, 495, 539, 542, 1120
TfiI	GAWTC	9 cut(s)	177, 201, 206, 224, 265, 395, 697, 996, 1061
TscAI	CASTG	3 cut(s)	573, 944, 1083
TseFI	GTSAC	1 cut(s)	1007
TseI	GCWGC	6 cut(s)	74, 240, 351, 404, 458, 542
Tsp45I	GTSAC	1 cut(s)	1007
TspDTI	ATGAA	5 cut(s)	861, 918, 1074, 1185, 1215
TspRI	CASTG	3 cut(s)	573, 944, 1083
Van91I	CCANNNNNTGG	1 cut(s)	313
XapI	RAATTY	1 cut(s)	39
XmiI	GTMKAC	1 cut(s)	1036
XspI	CTAG	2 cut(s)	875, 1122
Zsp2I	ATGCAT	1 cut(s)	649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.