AT2G44850

Uncharacterised protein family UPF0565

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0013327
Physical Location & Seq
Forward (+)
18498672 .. 18500879
2208 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G44850.2

Sequence Viewer

Length: 1203 bp
ATGAATCTCGTTAAGAACAGAGACGACGAAACCTGCCGGAGAACCGAGGAGAGAAAAAACCCCGGCGAAAATGGGAATTTGAATTCGTCTTCTGTTGATCATCGCTTCACTTCTGCTTCCAGAGCTTTTACTCAGAAGAAGCTCGATGATCTCAAATCTCTCTTTGTTTCCCTCGCTTCCAAGTCTCACAGCAATGACCAATACGTCTCGTACCCTGTTTTCCAGGTTTTGACGATTTGTGTGTCTGATTTAGAGTCGTTCCTGGATATCAAGTCCTGCATCTGCTATATGAAGATAGTTATAAAGATCCTAGCTTTTCGATCAAAGATTCTGAACTTTGATCAACAGGTGCCTTCTGCAAATGCAATATTCTTTCATGGTGACAAAGTTCAAGACACTGGGAATCATGTGATTGAGAGGCTCTATGATCTGCAGAAAGTAGCTGAAATCATTGTTTCTAAATTTGGCAACTCTGTTAATGCTTGGGTTGTTGAAGCTTCTGTCTTTAATGGACCATTTGCTATCTACAAAGACTTTGTTCCATCAGTGAATCACATGGGAGCACCAAAATCTTATTCCCCAGTTGGCTTCCCAGCTTCTTCATCAATTGTCTCCCTCTTATCTAGTTGCCTCCATGAGGTATTGAAGGAAGGCACTGATGTGTGTTTGATAGACCAGATTGCATCAGTTCATCACTGTCCCAAAACTATTGTGCTTGGATTTAGCAAGGGTGGAGTTGTGATGAACCAGCTCATGAGTGAGATCAGTTCCTTGGATACCAACTTTGCGAAAACTTCATCTGCAATGGTAGAAGAATCTACCAGCCAGCATGAAAAGATTCAGATCATTCCAGCCTCCAAAGAAAGCTTCCTCAACAGCATTTCTGAAGTTCATTATATAGATGTAGGACTGAACTCTTCTGGTGCCTACATTACTGATCACAATGTCGTGCAGAGAATCTCCCAACGCCTTGCACGAGGTGCAGACTCGCTACGCATTGTCATTCATGGAACTCCTAGGCAGTGGTGTGATGAGCTGCGAGGCTGGATTCGCAAGGAAAAAGATGAGTTGGTTCGTTTGCTCAAAGCTGAAACTGAGAATTCCGGTGGGAAACTACAGGTCTGTGAAAGGTTCTATTTTTCTGATAGACTTGCTGATTTGCAAATGCACTTTGAGATAATTGATGCTATGGATGTCTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0565

Protein Analysis

400

Amino Acids

44.73

Weight (kDa)

6.24

Isoelectric Point (pI)

36.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2orf69 PF10561 154 - 281 1.4e-12 C2orf69
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013327)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44850 AT2G44850 AT2G44850
fragaria_vesca FvH4_7g09990
malus_domestica MD07G1104800.v1.1
prunus_persica Prupe.2G132600_v2.0.a1 Prupe.2G132600_v2.0.a1
pyrus_communis pycom07g08990
rosa_chinensis RchiOBHm_Chr1g0347591
rosa_laevigata RLG00000028735
rosa_multiflora Rmu_sc0010621.1_g000015 Rmu_sc0021384.1_g000001
rosa_roxburghii Rroxscaffold_4G00307630
rosa_rugosa Rorug01G0188100
rosa_samantha Rh1CG190000 Rh1DG201000
rosa_wichuraiana Rw0G013660 Rw1G017230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 302
AasI GACNNNNNNGTC 1 cut(s) 203
Acc36I ACCTGC 1 cut(s) 41
AccB1I GGYRCC 2 cut(s) 349, 923
AclWI GGATC 1 cut(s) 301
AcsI RAATTY 4 cut(s) 76, 82, 461, 1099
AcuI CTGAAG 1 cut(s) 906
AdeI CACNNNGTG 1 cut(s) 980
AfaI GTAC 1 cut(s) 212
AfiI CCNNNNNNNGG 1 cut(s) 637
AgsI TTSAA 4 cut(s) 82, 392, 494, 646
AjnI CCWGG 2 cut(s) 222, 261
AjuI GAANNNNNNNTTGG 4 cut(s) 559, 591, 851, 883
AleI CACNNNNGTG 1 cut(s) 659
Alw21I GWGCWC 1 cut(s) 565
Alw26I GTCTC 4 cut(s) 15, 189, 211, 616
AlwI GGATC 1 cut(s) 301
ApeKI GCWGC 1 cut(s) 1036
ApoI RAATTY 4 cut(s) 76, 82, 461, 1099
Asp700I GAANNNNTTC 1 cut(s) 837
AspA2I CCTAGG 1 cut(s) 1016
AspS9I GGNCC 1 cut(s) 512
AsuC2I CCSGG 1 cut(s) 63
AsuHPI GGTGA 1 cut(s) 392
AvaII GGWCC 1 cut(s) 512
AvrII CCTAGG 1 cut(s) 1016
BanI GGYRCC 2 cut(s) 349, 923
BauI CACGAG 1 cut(s) 975
BbsI GAAGAC 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 565
BbvI GCAGC 1 cut(s) 1023
BccI CCATC 1 cut(s) 550
BciT130I CCWGG 2 cut(s) 224, 263
BciVI GTATCC 1 cut(s) 769
BclI TGATCA 3 cut(s) 97, 340, 937
BcnI CCSGG 1 cut(s) 63
BcoDI GTCTC 4 cut(s) 15, 189, 211, 616
BfaI CTAG 3 cut(s) 311, 624, 1017
BfmI CTRYAG 2 cut(s) 431, 1115
BfuAI ACCTGC 1 cut(s) 41
BfuI GTATCC 1 cut(s) 769
BisI GCNGC 1 cut(s) 1037
BlnI CCTAGG 1 cut(s) 1016
BlsI GCNGC 1 cut(s) 1038
Bme1390I CCNGG 3 cut(s) 63, 224, 263
Bme18I GGWCC 1 cut(s) 512
BmgT120I GGNCC 1 cut(s) 512
BmiI GGNNCC 2 cut(s) 351, 925
BmrFI CCNGG 3 cut(s) 63, 224, 263
BmrI ACTGGG 2 cut(s) 408, 575
BmsI GCATC 3 cut(s) 288, 692, 1174
BmuI ACTGGG 2 cut(s) 408, 575
BpiI GAAGAC 1 cut(s) 81
BpuMI CCSGG 1 cut(s) 63
BsaBI GATNNNNATC 1 cut(s) 842
BsaJI CCNNGG 4 cut(s) 45, 61, 771, 1016
BsaWI WCCGGW 1 cut(s) 1103
Bsc4I CCNNNNNNNGG 1 cut(s) 637
Bse1I ACTGG 2 cut(s) 403, 581
Bse3DI GCAATG 2 cut(s) 199, 810
Bse8I GATNNNNATC 1 cut(s) 842
BseBI CCWGG 2 cut(s) 224, 263
BseDI CCNNGG 4 cut(s) 45, 61, 771, 1016
BseGI GGATG 1 cut(s) 1198
BseJI GATNNNNATC 1 cut(s) 842
BseLI CCNNNNNNNGG 1 cut(s) 637
BseMI GCAATG 2 cut(s) 199, 810
BseMII CTCAG 2 cut(s) 146, 1086
BseNI ACTGG 2 cut(s) 403, 581
BseRI GAGGAG 1 cut(s) 62
BseXI GCAGC 1 cut(s) 1023
BseYI CCCAGC 1 cut(s) 592
BsgI GTGCAG 2 cut(s) 971, 1002
BshNI GGYRCC 2 cut(s) 349, 923
BsiHKAI GWGCWC 1 cut(s) 565
BsiSI CCGG 3 cut(s) 37, 63, 1104
BslFI GGGAC 1 cut(s) 684
BslI CCNNNNNNNGG 1 cut(s) 637
BsmAI GTCTC 4 cut(s) 15, 189, 211, 616
BsmBI CGTCTC 2 cut(s) 15, 211
BsmFI GGGAC 1 cut(s) 684
Bsp1286I GDGCHC 1 cut(s) 565
Bsp143I GATC 9 cut(s) 97, 148, 306, 320, 340, 427, 762, 843, 937
BspCNI CTCAG 2 cut(s) 145, 1087
BspHI TCATGA 1 cut(s) 753
BspLI GGNNCC 2 cut(s) 351, 925
BspMAI CTGCAG 1 cut(s) 435
BspMI ACCTGC 1 cut(s) 41
BspPI GGATC 1 cut(s) 301
BspT107I GGYRCC 2 cut(s) 349, 923
BsrDI GCAATG 2 cut(s) 199, 810
BsrI ACTGG 2 cut(s) 403, 581
BssECI CCNNGG 4 cut(s) 45, 61, 771, 1016
BssMI GATC 9 cut(s) 97, 148, 306, 320, 340, 427, 762, 843, 937
BssSI CACGAG 1 cut(s) 975
BssT1I CCWWGG 2 cut(s) 771, 1016
Bst2BI CACGAG 1 cut(s) 975
Bst2UI CCWGG 2 cut(s) 224, 263
Bst4CI ACNGT 1 cut(s) 698
Bst6I CTCTTC 1 cut(s) 922
BstAPI GCANNNNNTGC 1 cut(s) 980
BstC8I GCNNGC 1 cut(s) 827
BstDEI CTNAG 2 cut(s) 132, 1095
BstENI CCTNNNNNAGG 1 cut(s) 635
BstF5I GGATG 1 cut(s) 1198
BstKTI GATC 9 cut(s) 100, 151, 309, 323, 343, 430, 765, 846, 940
BstMAI GTCTC 4 cut(s) 15, 189, 211, 616
BstMBI GATC 9 cut(s) 97, 148, 306, 320, 340, 427, 762, 843, 937
BstMWI GCNNNNNNNGC 3 cut(s) 122, 980, 1050
BstNI CCWGG 2 cut(s) 224, 263
BstSCI CCNGG 3 cut(s) 61, 222, 261
BstSFI CTRYAG 2 cut(s) 431, 1115
BstV1I GCAGC 1 cut(s) 1023
BstV2I GAAGAC 1 cut(s) 81
BstX2I RGATCY 1 cut(s) 306
BstYI RGATCY 1 cut(s) 306
BsuI GTATCC 1 cut(s) 769
BtgZI GCGATG 1 cut(s) 86
BtsCI GGATG 1 cut(s) 1198
BtsI GCAGTG 1 cut(s) 1028
BtsIMutI CAGTG 5 cut(s) 396, 552, 654, 694, 1028
BveI ACCTGC 1 cut(s) 41
Cac8I GCNNGC 1 cut(s) 827
CciI TCATGA 1 cut(s) 753
Cfr13I GGNCC 1 cut(s) 512
Csp6I GTAC 1 cut(s) 211
CviAII CATG 7 cut(s) 377, 407, 556, 635, 754, 830, 1007
CviQI GTAC 1 cut(s) 211
DdeI CTNAG 2 cut(s) 132, 1095
DpnI GATC 9 cut(s) 99, 150, 308, 322, 342, 429, 764, 845, 939
DpnII GATC 9 cut(s) 97, 148, 306, 320, 340, 427, 762, 843, 937
DraIII CACNNNGTG 1 cut(s) 980
DrdI GACNNNNNNGTC 1 cut(s) 203
DseDI GACNNNNNNGTC 1 cut(s) 203
Eam1104I CTCTTC 1 cut(s) 922
EarI CTCTTC 1 cut(s) 922
Eco130I CCWWGG 2 cut(s) 771, 1016
Eco32I GATATC 1 cut(s) 268
Eco47I GGWCC 1 cut(s) 512
Eco57I CTGAAG 1 cut(s) 906
EcoNI CCTNNNNNAGG 1 cut(s) 635
EcoRI GAATTC 2 cut(s) 82, 1099
EcoRII CCWGG 2 cut(s) 222, 261
EcoRV GATATC 1 cut(s) 268
EcoT14I CCWWGG 2 cut(s) 771, 1016
ErhI CCWWGG 2 cut(s) 771, 1016
Esp3I CGTCTC 2 cut(s) 15, 211
FaeI CATG 7 cut(s) 380, 410, 559, 638, 757, 833, 1010
FaqI GGGAC 1 cut(s) 684
FatI CATG 7 cut(s) 376, 406, 555, 634, 753, 829, 1006
FbaI TGATCA 3 cut(s) 97, 340, 937
Fnu4HI GCNGC 1 cut(s) 1037
Fsp4HI GCNGC 1 cut(s) 1037
FspBI CTAG 3 cut(s) 311, 624, 1017
GluI GCNGC 1 cut(s) 1037
GsaI CCCAGC 1 cut(s) 596
HapII CCGG 3 cut(s) 37, 63, 1104
Hin1II CATG 7 cut(s) 380, 410, 559, 638, 757, 833, 1010
HindIII AAGCTT 2 cut(s) 495, 865
HpaII CCGG 3 cut(s) 37, 63, 1104
HphI GGTGA 1 cut(s) 392
Hpy188I TCNGA 6 cut(s) 135, 247, 333, 843, 886, 1144
Hpy188III TCNNGA 3 cut(s) 120, 392, 754
Hpy99I CGWCG 1 cut(s) 29
HpyAV CCTTC 3 cut(s) 363, 640, 644
HpyCH4III ACNGT 1 cut(s) 698
HpyCH4IV ACGT 1 cut(s) 204
HpyF10VI GCNNNNNNNGC 3 cut(s) 122, 980, 1050
HpyF3I CTNAG 2 cut(s) 132, 1095
HpySE526I ACGT 1 cut(s) 204
Hsp92II CATG 7 cut(s) 380, 410, 559, 638, 757, 833, 1010
Ksp22I TGATCA 3 cut(s) 97, 340, 937
Kzo9I GATC 9 cut(s) 97, 148, 306, 320, 340, 427, 762, 843, 937
LmnI GCTCC 1 cut(s) 560
Lsp1109I GCAGC 1 cut(s) 1023
LweI GCATC 3 cut(s) 288, 692, 1174
MaeI CTAG 3 cut(s) 311, 624, 1017
MaeII ACGT 1 cut(s) 204
MaeIII GTNAC 1 cut(s) 380
MalI GATC 9 cut(s) 99, 150, 308, 322, 342, 429, 764, 845, 939
MboI GATC 9 cut(s) 97, 148, 306, 320, 340, 427, 762, 843, 937
MboII GAAGA 6 cut(s) 81, 148, 304, 591, 824, 909
MfeI CAATTG 1 cut(s) 606
MflI RGATCY 1 cut(s) 306
MhlI GDGCHC 1 cut(s) 565
MluCI AATT 6 cut(s) 76, 82, 461, 606, 1099, 1179
MlyI GAGTC 2 cut(s) 263, 980
MroXI GAANNNNTTC 1 cut(s) 837
MseI TTAA 3 cut(s) 12, 477, 507
MslI CAYNNNNRTG 2 cut(s) 192, 659
MspI CCGG 3 cut(s) 37, 63, 1104
MspR9I CCNGG 3 cut(s) 63, 224, 263
MunI CAATTG 1 cut(s) 606
MvaI CCWGG 2 cut(s) 224, 263
MwoI GCNNNNNNNGC 3 cut(s) 122, 980, 1050
NciI CCSGG 1 cut(s) 63
NdeII GATC 9 cut(s) 97, 148, 306, 320, 340, 427, 762, 843, 937
NlaIII CATG 7 cut(s) 380, 410, 559, 638, 757, 833, 1010
NlaIV GGNNCC 2 cut(s) 351, 925
NmuCI GTSAC 1 cut(s) 380
OliI CACNNNNGTG 1 cut(s) 659
PagI TCATGA 1 cut(s) 753
PcsI WCGNNNNNNNCGW 1 cut(s) 973
PdmI GAANNNNTTC 1 cut(s) 837
PfeI GAWTC 8 cut(s) 4, 328, 403, 550, 815, 838, 957, 1048
PfoI TCCNGGA 1 cut(s) 261
PkrI GCNGC 1 cut(s) 1038
PleI GAGTC 2 cut(s) 262, 980
PpsI GAGTC 2 cut(s) 262, 980
PsiI TTATAA 1 cut(s) 302
Psp6I CCWGG 2 cut(s) 222, 261
PspFI CCCAGC 1 cut(s) 592
PspGI CCWGG 2 cut(s) 222, 261
PspN4I GGNNCC 2 cut(s) 351, 925
PspPI GGNCC 1 cut(s) 512
PstI CTGCAG 1 cut(s) 435
PsuI RGATCY 1 cut(s) 306
RsaI GTAC 1 cut(s) 212
RsaNI GTAC 1 cut(s) 211
RseI CAYNNNNRTG 2 cut(s) 192, 659
SaqAI TTAA 3 cut(s) 12, 477, 507
SatI GCNGC 1 cut(s) 1037
Sau3AI GATC 9 cut(s) 97, 148, 306, 320, 340, 427, 762, 843, 937
Sau96I GGNCC 1 cut(s) 512
SchI GAGTC 2 cut(s) 263, 980
ScrFI CCNGG 3 cut(s) 63, 224, 263
SduI GDGCHC 1 cut(s) 565
SfaNI GCATC 3 cut(s) 288, 692, 1174
SfcI CTRYAG 2 cut(s) 431, 1115
SinI GGWCC 1 cut(s) 512
SmiMI CAYNNNNRTG 2 cut(s) 192, 659
Sse9I AATT 6 cut(s) 76, 82, 461, 606, 1099, 1179
SspI AATATT 1 cut(s) 369
SspMI CTAG 3 cut(s) 311, 624, 1017
StyD4I CCNGG 3 cut(s) 61, 222, 261
StyI CCWWGG 2 cut(s) 771, 1016
TaaI ACNGT 1 cut(s) 698
TaiI ACGT 1 cut(s) 207
TaqI TCGA 2 cut(s) 144, 319
TasI AATT 6 cut(s) 76, 82, 461, 606, 1099, 1179
TfiI GAWTC 8 cut(s) 4, 328, 403, 550, 815, 838, 957, 1048
Tru1I TTAA 3 cut(s) 12, 477, 507
Tru9I TTAA 3 cut(s) 12, 477, 507
TscAI CASTG 5 cut(s) 403, 552, 661, 701, 1028
TseFI GTSAC 1 cut(s) 380
TseI GCWGC 1 cut(s) 1036
Tsp45I GTSAC 1 cut(s) 380
TspRI CASTG 5 cut(s) 403, 552, 661, 701, 1028
VpaK11BI GGWCC 1 cut(s) 512
XagI CCTNNNNNAGG 1 cut(s) 635
XapI RAATTY 4 cut(s) 76, 82, 461, 1099
XmaJI CCTAGG 1 cut(s) 1016
XmnI GAANNNNTTC 1 cut(s) 837
XspI CTAG 3 cut(s) 311, 624, 1017
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.