Rroxscaffold_4G00307630

UPF0565 protein C2orf69 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0013327
Physical Location & Seq
Forward (+)
29082206 .. 29083830
1625 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00307630.1

Sequence Viewer

Length: 822 bp
ATGGACCGCTGGCGTGGAGTTCTAAAAGTCCCATTACATCCTCTTGCTGGGACCTGCTACCGTGTTGCAGCATCTCTCTGCCTTTCCCCTACTTCTGAAACACTAATTGTTCCTTCAACAAATGCCATCTTTTTTGGCGGAGATCGAGTTGCAGGCACTGGTAATCTAGTTGTTGAGAGGTTATCAGACTTGCAGAATATAGCTGAAATACTGGTTTCAAAGATTGGTGGTTCAGTCAATGCTTGGGTTATTGAAGCTTCTGATTTCAATGGGCCTTTCGCTGTGTACAAGGACTTTATACCATCTGTTAATCAATGGGGAGAACCGAAGTCATACTGCCCTGTTGGATATCCAGCTTCTGGATCAATTGTTTCACTCTTATCAAATTTCCTTGAAGAGATATTGAATTATCTGGAGGTGAGCTCGTGGAGGAAAAAAATTAATATGGAAGAAGAGTTTCATATCATACCTAGAACAAAGGAAACCCTTCTGAACAGCATCAGAGAAATTCATTATGTGGATGTTGGACTAAATTCACCTGGTGCATATATCACTGACCATAGTGCGATTGAGAAAATCTCCAAACGCCTAACACAAGTAGATAGAGGAATCCGTTTTATCCTTCATGGAACACCCAGGCAATGGCGTGACAGCAGGCGTTCTTGGATATGCAATGAAAAAGACAAATTGGTTCATCTGCTTGAATCCGAAGCTCAAAGAAGAGGCGGAAAATTACAGGTTTGTGAGAAATTCTATTTTCCTGATAGGCCACCTGATTTGCAGATGCATTTTGAAATAATTGAAAAATTGGATGTCAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0565

Protein Analysis

273

Amino Acids

30.9

Weight (kDa)

6.67

Isoelectric Point (pI)

46.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013327)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44850 AT2G44850 AT2G44850
fragaria_vesca FvH4_7g09990
malus_domestica MD07G1104800.v1.1
prunus_persica Prupe.2G132600_v2.0.a1 Prupe.2G132600_v2.0.a1
pyrus_communis pycom07g08990
rosa_chinensis RchiOBHm_Chr1g0347591
rosa_laevigata RLG00000028735
rosa_multiflora Rmu_sc0010621.1_g000015 Rmu_sc0021384.1_g000001
rosa_roxburghii Rroxscaffold_4G00307630
rosa_rugosa Rorug01G0188100
rosa_samantha Rh1CG190000 Rh1DG201000
rosa_wichuraiana Rw0G013660 Rw1G017230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 62
AccB7I CCANNNNNTGG 2 cut(s) 359, 642
AciI CCGC 3 cut(s) 7, 138, 726
AclWI GGATC 1 cut(s) 370
AcsI RAATTY 4 cut(s) 385, 507, 532, 749
AdeI CACNNNGTG 1 cut(s) 542
AfaI GTAC 1 cut(s) 287
AfiI CCNNNNNNNGG 3 cut(s) 47, 359, 642
AgsI TTSAA 9 cut(s) 117, 219, 254, 268, 395, 406, 704, 794, 803
AjnI CCWGG 2 cut(s) 538, 635
AluBI AGCT 5 cut(s) 203, 257, 356, 423, 713
AluI AGCT 5 cut(s) 203, 257, 356, 423, 713
Alw21I GWGCWC 1 cut(s) 425
AlwI GGATC 1 cut(s) 370
AlwNI CAGNNNCTG 2 cut(s) 158, 359
AoxI GGCC 2 cut(s) 272, 767
ApeKI GCWGC 1 cut(s) 68
ApoI RAATTY 4 cut(s) 385, 507, 532, 749
AseI ATTAAT 1 cut(s) 441
Asp700I GAANNNNTTC 2 cut(s) 456, 486
AspS9I GGNCC 3 cut(s) 4, 51, 272
AsuHPI GGTGA 2 cut(s) 430, 528
AvaII GGWCC 2 cut(s) 4, 51
BanII GRGCYC 1 cut(s) 425
BauI CACGAG 1 cut(s) 424
Bbv12I GWGCWC 1 cut(s) 425
BbvI GCAGC 1 cut(s) 80
BccI CCATC 2 cut(s) 134, 310
BciT130I CCWGG 2 cut(s) 540, 637
BfaI CTAG 2 cut(s) 167, 471
BfuAI ACCTGC 1 cut(s) 62
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
Bme1390I CCNGG 2 cut(s) 540, 637
Bme18I GGWCC 2 cut(s) 4, 51
BmgT120I GGNCC 3 cut(s) 4, 51, 272
BmiI GGNNCC 1 cut(s) 52
BmrFI CCNGG 2 cut(s) 540, 637
BmsI GCATC 3 cut(s) 80, 507, 774
BplI GAGNNNNNCTC 4 cut(s) 407, 439, 563, 595
BpmI CTGGAG 1 cut(s) 434
BsaJI CCNNGG 1 cut(s) 635
BsaXI ACNNNNNCTCC 2 cut(s) 132, 162
Bsc4I CCNNNNNNNGG 3 cut(s) 47, 359, 642
Bse1I ACTGG 2 cut(s) 163, 216
Bse3DI GCAATG 2 cut(s) 647, 679
BseBI CCWGG 2 cut(s) 540, 637
BseDI CCNNGG 1 cut(s) 635
BseGI GGATG 3 cut(s) 37, 526, 817
BseLI CCNNNNNNNGG 3 cut(s) 47, 359, 642
BseMI GCAATG 2 cut(s) 647, 679
BseNI ACTGG 2 cut(s) 163, 216
BseXI GCAGC 1 cut(s) 80
BseYI CCCAGC 1 cut(s) 47
BshFI GGCC 2 cut(s) 274, 769
BsiHKAI GWGCWC 1 cut(s) 425
BslFI GGGAC 2 cut(s) 14, 64
BslI CCNNNNNNNGG 3 cut(s) 47, 359, 642
BsmFI GGGAC 2 cut(s) 14, 64
BsnI GGCC 2 cut(s) 274, 769
Bsp1286I GDGCHC 1 cut(s) 425
Bsp1407I TGTACA 1 cut(s) 285
Bsp143I GATC 2 cut(s) 142, 362
BspACI CCGC 3 cut(s) 7, 138, 726
BspANI GGCC 2 cut(s) 274, 769
BspLI GGNNCC 1 cut(s) 52
BspMI ACCTGC 1 cut(s) 62
BspPI GGATC 1 cut(s) 370
BsrDI GCAATG 2 cut(s) 647, 679
BsrGI TGTACA 1 cut(s) 285
BsrI ACTGG 2 cut(s) 163, 216
BssECI CCNNGG 1 cut(s) 635
BssMI GATC 2 cut(s) 142, 362
BssSI CACGAG 1 cut(s) 424
Bst2BI CACGAG 1 cut(s) 424
Bst2UI CCWGG 2 cut(s) 540, 637
Bst4CI ACNGT 1 cut(s) 62
Bst6I CTCTTC 3 cut(s) 390, 447, 715
BstAUI TGTACA 1 cut(s) 285
BstC8I GCNNGC 3 cut(s) 11, 154, 656
BstF5I GGATG 3 cut(s) 37, 526, 817
BstKTI GATC 2 cut(s) 145, 365
BstMBI GATC 2 cut(s) 142, 362
BstNI CCWGG 2 cut(s) 540, 637
BstSCI CCNGG 2 cut(s) 538, 635
BstV1I GCAGC 1 cut(s) 80
BsuRI GGCC 2 cut(s) 274, 769
BtsCI GGATG 3 cut(s) 37, 526, 817
BtsIMutI CAGTG 2 cut(s) 156, 552
BveI ACCTGC 1 cut(s) 62
Cac8I GCNNGC 3 cut(s) 11, 154, 656
CaiI CAGNNNCTG 2 cut(s) 158, 359
Cfr13I GGNCC 3 cut(s) 4, 51, 272
CsiI ACCWGGT 1 cut(s) 538
Csp6I GTAC 1 cut(s) 286
CspCI CAANNNNNGTGG 2 cut(s) 759, 794
CviAII CATG 1 cut(s) 626
CviJI RGCY 7 cut(s) 203, 257, 274, 356, 423, 713, 769
CviKI_1 RGCY 7 cut(s) 203, 257, 274, 356, 423, 713, 769
CviQI GTAC 1 cut(s) 286
DpnI GATC 2 cut(s) 144, 364
DpnII GATC 2 cut(s) 142, 362
DraIII CACNNNGTG 1 cut(s) 542
Eam1104I CTCTTC 3 cut(s) 390, 447, 715
EarI CTCTTC 3 cut(s) 390, 447, 715
EciI GGCGGA 2 cut(s) 153, 741
Ecl136II GAGCTC 1 cut(s) 423
Eco24I GRGCYC 1 cut(s) 425
Eco32I GATATC 1 cut(s) 350
Eco47I GGWCC 2 cut(s) 4, 51
Eco53kI GAGCTC 1 cut(s) 423
EcoICRI GAGCTC 1 cut(s) 423
EcoO109I RGGNCCY 1 cut(s) 51
EcoRII CCWGG 2 cut(s) 538, 635
EcoRV GATATC 1 cut(s) 350
EcoT22I ATGCAT 1 cut(s) 789
EcoT38I GRGCYC 1 cut(s) 425
FaeI CATG 1 cut(s) 629
FaqI GGGAC 2 cut(s) 14, 64
FatI CATG 1 cut(s) 625
Fnu4HI GCNGC 1 cut(s) 69
FokI GGATG 2 cut(s) 24, 533
FriOI GRGCYC 1 cut(s) 425
Fsp4HI GCNGC 1 cut(s) 69
FspBI CTAG 2 cut(s) 167, 471
GluI GCNGC 1 cut(s) 69
GsaI CCCAGC 1 cut(s) 51
GsuI CTGGAG 1 cut(s) 434
HaeIII GGCC 2 cut(s) 274, 769
Hin1II CATG 1 cut(s) 629
HindIII AAGCTT 1 cut(s) 255
HinfI GANTC 2 cut(s) 609, 704
HphI GGTGA 2 cut(s) 430, 528
Hpy166II GTNNAC 1 cut(s) 286
Hpy188I TCNGA 6 cut(s) 97, 187, 262, 492, 503, 709
Hpy188III TCNNGA 3 cut(s) 360, 413, 761
Hpy8I GTNNAC 1 cut(s) 286
HpyAV CCTTC 3 cut(s) 123, 497, 632
HpyCH4III ACNGT 1 cut(s) 62
HpyCH4V TGCA 7 cut(s) 68, 152, 193, 545, 672, 781, 787
Hsp92II CATG 1 cut(s) 629
Kzo9I GATC 2 cut(s) 142, 362
Lsp1109I GCAGC 1 cut(s) 80
LweI GCATC 3 cut(s) 80, 507, 774
MabI ACCWGGT 1 cut(s) 538
MaeI CTAG 2 cut(s) 167, 471
MaeIII GTNAC 1 cut(s) 647
MalI GATC 2 cut(s) 144, 364
MboI GATC 2 cut(s) 142, 362
MboII GAAGA 4 cut(s) 407, 461, 464, 732
MfeI CAATTG 1 cut(s) 366
MhlI GDGCHC 1 cut(s) 425
MmeI TCCRAC 2 cut(s) 325, 505
MnlI CCTC 6 cut(s) 51, 171, 409, 423, 599, 716
Mph1103I ATGCAT 1 cut(s) 789
MroXI GAANNNNTTC 2 cut(s) 456, 486
MseI TTAA 3 cut(s) 309, 441, 820
MspA1I CMGCKG 1 cut(s) 9
MspR9I CCNGG 2 cut(s) 540, 637
MunI CAATTG 1 cut(s) 366
MvaI CCWGG 2 cut(s) 540, 637
NdeII GATC 2 cut(s) 142, 362
NlaIII CATG 1 cut(s) 629
NlaIV GGNNCC 1 cut(s) 52
NmuCI GTSAC 1 cut(s) 647
NsiI ATGCAT 1 cut(s) 789
PdmI GAANNNNTTC 2 cut(s) 456, 486
PfeI GAWTC 2 cut(s) 609, 704
PflMI CCANNNNNTGG 2 cut(s) 359, 642
PkrI GCNGC 1 cut(s) 70
PpuMI RGGWCCY 1 cut(s) 51
PshBI ATTAAT 1 cut(s) 441
Psp124BI GAGCTC 1 cut(s) 425
Psp5II RGGWCCY 1 cut(s) 51
Psp6I CCWGG 2 cut(s) 538, 635
PspFI CCCAGC 1 cut(s) 47
PspGI CCWGG 2 cut(s) 538, 635
PspN4I GGNNCC 1 cut(s) 52
PspPI GGNCC 3 cut(s) 4, 51, 272
PspPPI RGGWCCY 1 cut(s) 51
PstNI CAGNNNCTG 2 cut(s) 158, 359
RsaI GTAC 1 cut(s) 287
RsaNI GTAC 1 cut(s) 286
SacI GAGCTC 1 cut(s) 425
SaqAI TTAA 3 cut(s) 309, 441, 820
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 2 cut(s) 142, 362
Sau96I GGNCC 3 cut(s) 4, 51, 272
ScrFI CCNGG 2 cut(s) 540, 637
SduI GDGCHC 1 cut(s) 425
SexAI ACCWGGT 1 cut(s) 538
SfaNI GCATC 3 cut(s) 80, 507, 774
SinI GGWCC 2 cut(s) 4, 51
SsiI CCGC 3 cut(s) 7, 138, 726
SspMI CTAG 2 cut(s) 167, 471
SstI GAGCTC 1 cut(s) 425
StyD4I CCNGG 2 cut(s) 538, 635
TaaI ACNGT 1 cut(s) 62
TaqI TCGA 1 cut(s) 145
TatI WGTACW 1 cut(s) 285
TfiI GAWTC 2 cut(s) 609, 704
Tru1I TTAA 3 cut(s) 309, 441, 820
Tru9I TTAA 3 cut(s) 309, 441, 820
TscAI CASTG 2 cut(s) 163, 559
TseFI GTSAC 1 cut(s) 647
TseI GCWGC 1 cut(s) 68
Tsp45I GTSAC 1 cut(s) 647
TspDTI ATGAA 5 cut(s) 449, 500, 614, 683, 690
TspGWI ACGGA 1 cut(s) 602
TspRI CASTG 2 cut(s) 163, 559
Van91I CCANNNNNTGG 2 cut(s) 359, 642
VpaK11BI GGWCC 2 cut(s) 4, 51
VspI ATTAAT 1 cut(s) 441
XapI RAATTY 4 cut(s) 385, 507, 532, 749
XmnI GAANNNNTTC 2 cut(s) 456, 486
XspI CTAG 2 cut(s) 167, 471
Zsp2I ATGCAT 1 cut(s) 789
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.