RLG00000028735

UPF0565 protein C2orf69 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0013327
Physical Location & Seq
Forward (+)
27209392 .. 27212538
3147 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028735

Sequence Viewer

Length: 1068 bp
ATGCCCTTGCCAAGGCCCAATGGGTCTCTACAAGAAAGAGAAGAATCCCGATTCTTCGCTGGCTTCTGGCGCGCACATTCATTGGTTTGCTTCGCAAAATTGATTTTGTTCATGGACCGCTGGCGTGGAGTTCTAAAAGTCCCATTACATCCTCTTGCTGGGACGTGCTATCGTGTTGCAGCATCTCTCTGCCTTTCCCCTACTTCCGAAACACTAATTGTTCCTTCAGCAAATGCCATCTTTTTTGGCGGAGATCGAGTTGCAGGCACTGGTAATCTAGTTGTTGAGAGGTTATCAGACTTGCAGAATATAGCTGAAATACTGGTTTCAAAGATTGGTGGTTCAGTCAATGCTTGGGTTGTTGAAGCTTCTGATTTCAATGGGCCTTTCGCTGTGTACAAGGACTTTATACCATCTGTTAATCAATGGGGAGAGCCAAAGTCATACTGCCCTGTTGGATATCCAGCTTCTGGATCAATTGTTTCACTCTTATCAAATTTCCTTGAAGAGGTGAAGAATAGCATAGTGAGACGGAACAAACTGCGCTCACCAGGAAAATCCGCATCACATTTTACTAAACCTGAGACATTAATTTTTGGATTTAGCAAGGGTGGCACTGTACTTAACCAGATAGTTACCGAGCTTGGCTTCTCAGATATTGAATTATCTGGAGGTGAGCTCGTGGAGGAAAAAAAAATTAGTATGGAAGAAGAGATTCATATCATACCTAGAACAAAGGAAACCCTTCTGAACAGCATCAGAGAAATTCATTATGTGGATGTTGGACTAAATTCACCTGGTGCATATATCACTGACCATAGTGCAATTGACAAAATCTCCAAACGCCTAACACAAGTAGATAGAGGAATCCGTTTTATCCTTCATGGAACACCCAGGCAATGGTGCGACAGCAGGCGTTCTTGGATATGCAATGAAAAAGACGAATTGGTTCATCTGCTTGAATCTGAAGCTCAAAGAAGAGGTGGAAAATTACAGGTATCTAGATACCAGGATATTGTATATACTTTAACCGTACAAGGCCGTACTAGGCCGTCCTTTGGATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0565

Protein Analysis

356

Amino Acids

39.54

Weight (kDa)

8.67

Isoelectric Point (pI)

43.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2orf69 PF10561 192 - 321 7.9e-09 C2orf69
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013327)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44850 AT2G44850 AT2G44850
fragaria_vesca FvH4_7g09990
malus_domestica MD07G1104800.v1.1
prunus_persica Prupe.2G132600_v2.0.a1 Prupe.2G132600_v2.0.a1
pyrus_communis pycom07g08990
rosa_chinensis RchiOBHm_Chr1g0347591
rosa_laevigata RLG00000028735
rosa_multiflora Rmu_sc0010621.1_g000015 Rmu_sc0021384.1_g000001
rosa_roxburghii Rroxscaffold_4G00307630
rosa_rugosa Rorug01G0188100
rosa_samantha Rh1CG190000 Rh1DG201000
rosa_wichuraiana Rw0G013660 Rw1G017230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 470, 900
AccII CGCG 1 cut(s) 72
AciI CCGC 3 cut(s) 118, 249, 561
AclWI GGATC 1 cut(s) 481
AcsI RAATTY 3 cut(s) 496, 765, 790
AcuI CTGAAG 2 cut(s) 210, 987
AdeI CACNNNGTG 1 cut(s) 800
AfaI GTAC 4 cut(s) 398, 621, 1035, 1045
AfiI CCNNNNNNNGG 6 cut(s) 12, 158, 470, 508, 900, 1058
AgsI TTSAA 6 cut(s) 330, 365, 379, 506, 662, 962
AjiI CACGTC 1 cut(s) 165
AjnI CCWGG 4 cut(s) 550, 796, 893, 1008
AluBI AGCT 6 cut(s) 314, 368, 467, 643, 679, 971
AluI AGCT 6 cut(s) 314, 368, 467, 643, 679, 971
Alw21I GWGCWC 1 cut(s) 681
Alw26I GTCTC 3 cut(s) 30, 523, 578
AlwI GGATC 1 cut(s) 481
AlwNI CAGNNNCTG 2 cut(s) 269, 470
AoxI GGCC 4 cut(s) 14, 383, 1039, 1049
ApeKI GCWGC 1 cut(s) 179
ApoI RAATTY 3 cut(s) 496, 765, 790
AseI ATTAAT 1 cut(s) 590
Asp700I GAANNNNTTC 3 cut(s) 714, 744, 948
AspLEI GCGC 3 cut(s) 72, 74, 546
AspS9I GGNCC 3 cut(s) 15, 115, 383
AsuHPI GGTGA 4 cut(s) 523, 540, 686, 786
AvaII GGWCC 1 cut(s) 115
BanII GRGCYC 1 cut(s) 681
BauI CACGAG 1 cut(s) 680
Bbv12I GWGCWC 1 cut(s) 681
BbvI GCAGC 1 cut(s) 191
BccI CCATC 2 cut(s) 245, 421
BceAI ACGGC 2 cut(s) 1026, 1036
BciT130I CCWGG 4 cut(s) 552, 798, 895, 1010
BcoDI GTCTC 3 cut(s) 30, 523, 578
BfaI CTAG 4 cut(s) 278, 729, 1002, 1047
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
Bme1390I CCNGG 4 cut(s) 552, 798, 895, 1010
Bme18I GGWCC 1 cut(s) 115
BmgBI CACGTC 1 cut(s) 165
BmgT120I GGNCC 3 cut(s) 15, 115, 383
BmrFI CCNGG 4 cut(s) 552, 798, 895, 1010
BmsI GCATC 3 cut(s) 191, 572, 765
BplI GAGNNNNNCTC 2 cut(s) 663, 695
BpmI CTGGAG 1 cut(s) 690
BsaBI GATNNNNATC 1 cut(s) 719
BsaI GGTCTC 1 cut(s) 30
BsaJI CCNNGG 2 cut(s) 11, 893
BsaXI ACNNNNNCTCC 4 cut(s) 243, 273, 821, 851
Bsc4I CCNNNNNNNGG 6 cut(s) 12, 158, 470, 508, 900, 1058
Bse1I ACTGG 2 cut(s) 274, 327
Bse3DI GCAATG 2 cut(s) 905, 937
Bse8I GATNNNNATC 1 cut(s) 719
BseBI CCWGG 4 cut(s) 552, 798, 895, 1010
BseDI CCNNGG 2 cut(s) 11, 893
BseGI GGATG 2 cut(s) 148, 784
BseJI GATNNNNATC 1 cut(s) 719
BseLI CCNNNNNNNGG 6 cut(s) 12, 158, 470, 508, 900, 1058
BseMI GCAATG 2 cut(s) 905, 937
BseMII CTCAG 2 cut(s) 573, 666
BseNI ACTGG 2 cut(s) 274, 327
BsePI GCGCGC 1 cut(s) 70
BseXI GCAGC 1 cut(s) 191
BseYI CCCAGC 1 cut(s) 158
Bsh1236I CGCG 1 cut(s) 72
BshFI GGCC 4 cut(s) 16, 385, 1041, 1051
BsiHKAI GWGCWC 1 cut(s) 681
BslFI GGGAC 2 cut(s) 125, 175
BslI CCNNNNNNNGG 6 cut(s) 12, 158, 470, 508, 900, 1058
BsmAI GTCTC 3 cut(s) 30, 523, 578
BsmBI CGTCTC 1 cut(s) 523
BsmFI GGGAC 2 cut(s) 125, 175
BsnI GGCC 4 cut(s) 16, 385, 1041, 1051
Bso31I GGTCTC 1 cut(s) 30
Bsp1286I GDGCHC 1 cut(s) 681
Bsp1407I TGTACA 1 cut(s) 396
Bsp143I GATC 3 cut(s) 253, 473, 1061
BspACI CCGC 3 cut(s) 118, 249, 561
BspANI GGCC 4 cut(s) 16, 385, 1041, 1051
BspCNI CTCAG 2 cut(s) 574, 665
BspFNI CGCG 1 cut(s) 72
BspPI GGATC 1 cut(s) 481
BspTNI GGTCTC 1 cut(s) 30
BsrDI GCAATG 2 cut(s) 905, 937
BsrGI TGTACA 1 cut(s) 396
BsrI ACTGG 2 cut(s) 274, 327
BssECI CCNNGG 2 cut(s) 11, 893
BssHII GCGCGC 1 cut(s) 70
BssMI GATC 3 cut(s) 253, 473, 1061
BssSI CACGAG 1 cut(s) 680
BssT1I CCWWGG 1 cut(s) 11
Bst2BI CACGAG 1 cut(s) 680
Bst2UI CCWGG 4 cut(s) 552, 798, 895, 1010
Bst4CI ACNGT 2 cut(s) 619, 1033
Bst6I CTCTTC 3 cut(s) 501, 705, 973
BstAUI TGTACA 1 cut(s) 396
BstC8I GCNNGC 5 cut(s) 61, 72, 122, 265, 914
BstDEI CTNAG 2 cut(s) 582, 652
BstENI CCTNNNNNAGG 2 cut(s) 10, 506
BstF5I GGATG 2 cut(s) 148, 784
BstFNI CGCG 1 cut(s) 72
BstHHI GCGC 3 cut(s) 72, 74, 546
BstKTI GATC 3 cut(s) 256, 476, 1064
BstMAI GTCTC 3 cut(s) 30, 523, 578
BstMBI GATC 3 cut(s) 253, 473, 1061
BstMWI GCNNNNNNNGC 2 cut(s) 69, 612
BstNI CCWGG 4 cut(s) 552, 798, 895, 1010
BstSCI CCNGG 4 cut(s) 550, 796, 893, 1008
BstUI CGCG 1 cut(s) 72
BstV1I GCAGC 1 cut(s) 191
BstX2I RGATCY 1 cut(s) 1061
BstYI RGATCY 1 cut(s) 1061
BsuRI GGCC 4 cut(s) 16, 385, 1041, 1051
BtrI CACGTC 1 cut(s) 165
BtsCI GGATG 2 cut(s) 148, 784
BtsIMutI CAGTG 3 cut(s) 267, 615, 810
Cac8I GCNNGC 5 cut(s) 61, 72, 122, 265, 914
CaiI CAGNNNCTG 2 cut(s) 269, 470
CfoI GCGC 3 cut(s) 72, 74, 546
Cfr13I GGNCC 3 cut(s) 15, 115, 383
CsiI ACCWGGT 1 cut(s) 796
Csp6I GTAC 4 cut(s) 397, 620, 1034, 1044
CviAII CATG 2 cut(s) 112, 884
CviQI GTAC 4 cut(s) 397, 620, 1034, 1044
DdeI CTNAG 2 cut(s) 582, 652
DpnI GATC 3 cut(s) 255, 475, 1063
DpnII GATC 3 cut(s) 253, 473, 1061
DraIII CACNNNGTG 1 cut(s) 800
Eam1104I CTCTTC 3 cut(s) 501, 705, 973
EarI CTCTTC 3 cut(s) 501, 705, 973
EciI GGCGGA 1 cut(s) 264
Ecl136II GAGCTC 1 cut(s) 679
Eco130I CCWWGG 1 cut(s) 11
Eco24I GRGCYC 1 cut(s) 681
Eco31I GGTCTC 1 cut(s) 30
Eco32I GATATC 1 cut(s) 461
Eco47I GGWCC 1 cut(s) 115
Eco53kI GAGCTC 1 cut(s) 679
Eco57I CTGAAG 2 cut(s) 210, 987
EcoICRI GAGCTC 1 cut(s) 679
EcoNI CCTNNNNNAGG 2 cut(s) 10, 506
EcoRII CCWGG 4 cut(s) 550, 796, 893, 1008
EcoRV GATATC 1 cut(s) 461
EcoT14I CCWWGG 1 cut(s) 11
EcoT38I GRGCYC 1 cut(s) 681
ErhI CCWWGG 1 cut(s) 11
Esp3I CGTCTC 1 cut(s) 523
FaeI CATG 2 cut(s) 115, 887
FaqI GGGAC 2 cut(s) 125, 175
FatI CATG 2 cut(s) 111, 883
Fnu4HI GCNGC 1 cut(s) 180
FokI GGATG 2 cut(s) 135, 791
FriOI GRGCYC 1 cut(s) 681
Fsp4HI GCNGC 1 cut(s) 180
FspBI CTAG 4 cut(s) 278, 729, 1002, 1047
GlaI GCGC 3 cut(s) 71, 73, 545
GluI GCNGC 1 cut(s) 180
GsaI CCCAGC 1 cut(s) 162
GsuI CTGGAG 1 cut(s) 690
HaeIII GGCC 4 cut(s) 16, 385, 1041, 1051
HhaI GCGC 3 cut(s) 72, 74, 546
Hin1II CATG 2 cut(s) 115, 887
Hin6I GCGC 3 cut(s) 70, 72, 544
HinP1I GCGC 3 cut(s) 70, 72, 544
HindIII AAGCTT 1 cut(s) 366
HinfI GANTC 5 cut(s) 44, 51, 715, 867, 962
HphI GGTGA 4 cut(s) 523, 540, 686, 786
Hpy166II GTNNAC 1 cut(s) 397
Hpy188I TCNGA 7 cut(s) 208, 298, 373, 655, 750, 761, 967
Hpy188III TCNNGA 5 cut(s) 48, 471, 669, 1002, 1065
Hpy8I GTNNAC 1 cut(s) 397
HpyAV CCTTC 3 cut(s) 234, 755, 890
HpyCH4III ACNGT 2 cut(s) 619, 1033
HpyCH4IV ACGT 1 cut(s) 164
HpyCH4V TGCA 6 cut(s) 179, 263, 304, 803, 824, 930
HpyF10VI GCNNNNNNNGC 2 cut(s) 69, 612
HpyF3I CTNAG 2 cut(s) 582, 652
HpySE526I ACGT 1 cut(s) 164
Hsp92II CATG 2 cut(s) 115, 887
HspAI GCGC 3 cut(s) 70, 72, 544
Kzo9I GATC 3 cut(s) 253, 473, 1061
Lsp1109I GCAGC 1 cut(s) 191
LweI GCATC 3 cut(s) 191, 572, 765
MabI ACCWGGT 1 cut(s) 796
MaeI CTAG 4 cut(s) 278, 729, 1002, 1047
MaeII ACGT 1 cut(s) 164
MaeIII GTNAC 1 cut(s) 634
MalI GATC 3 cut(s) 255, 475, 1063
MboI GATC 3 cut(s) 253, 473, 1061
MboII GAAGA 7 cut(s) 46, 53, 518, 526, 719, 722, 990
MfeI CAATTG 2 cut(s) 477, 825
MflI RGATCY 1 cut(s) 1061
MhlI GDGCHC 1 cut(s) 681
MmeI TCCRAC 2 cut(s) 436, 763
MnlI CCTC 7 cut(s) 162, 282, 502, 665, 679, 857, 974
MroXI GAANNNNTTC 3 cut(s) 714, 744, 948
MseI TTAA 4 cut(s) 420, 590, 624, 1028
MspA1I CMGCKG 1 cut(s) 120
MspR9I CCNGG 4 cut(s) 552, 798, 895, 1010
MunI CAATTG 2 cut(s) 477, 825
MvaI CCWGG 4 cut(s) 552, 798, 895, 1010
MvnI CGCG 1 cut(s) 72
MwoI GCNNNNNNNGC 2 cut(s) 69, 612
NdeII GATC 3 cut(s) 253, 473, 1061
NlaIII CATG 2 cut(s) 115, 887
PauI GCGCGC 1 cut(s) 70
PdmI GAANNNNTTC 3 cut(s) 714, 744, 948
PfeI GAWTC 5 cut(s) 44, 51, 715, 867, 962
PflMI CCANNNNNTGG 2 cut(s) 470, 900
PkrI GCNGC 1 cut(s) 181
PshBI ATTAAT 1 cut(s) 590
Psp124BI GAGCTC 1 cut(s) 681
Psp6I CCWGG 4 cut(s) 550, 796, 893, 1008
PspFI CCCAGC 1 cut(s) 158
PspGI CCWGG 4 cut(s) 550, 796, 893, 1008
PspPI GGNCC 3 cut(s) 15, 115, 383
PstNI CAGNNNCTG 2 cut(s) 269, 470
PsuI RGATCY 1 cut(s) 1061
PteI GCGCGC 1 cut(s) 70
RsaI GTAC 4 cut(s) 398, 621, 1035, 1045
RsaNI GTAC 4 cut(s) 397, 620, 1034, 1044
SacI GAGCTC 1 cut(s) 681
SaqAI TTAA 4 cut(s) 420, 590, 624, 1028
SatI GCNGC 1 cut(s) 180
Sau3AI GATC 3 cut(s) 253, 473, 1061
Sau96I GGNCC 3 cut(s) 15, 115, 383
ScrFI CCNGG 4 cut(s) 552, 798, 895, 1010
SduI GDGCHC 1 cut(s) 681
SexAI ACCWGGT 1 cut(s) 796
SfaNI GCATC 3 cut(s) 191, 572, 765
SinI GGWCC 1 cut(s) 115
SsiI CCGC 3 cut(s) 118, 249, 561
SspMI CTAG 4 cut(s) 278, 729, 1002, 1047
SstI GAGCTC 1 cut(s) 681
StyD4I CCNGG 4 cut(s) 550, 796, 893, 1008
StyI CCWWGG 1 cut(s) 11
TaaI ACNGT 2 cut(s) 619, 1033
TaiI ACGT 1 cut(s) 167
TaqI TCGA 1 cut(s) 256
TatI WGTACW 2 cut(s) 396, 619
TfiI GAWTC 5 cut(s) 44, 51, 715, 867, 962
Tru1I TTAA 4 cut(s) 420, 590, 624, 1028
Tru9I TTAA 4 cut(s) 420, 590, 624, 1028
TscAI CASTG 3 cut(s) 274, 622, 817
TseI GCWGC 1 cut(s) 179
TspDTI ATGAA 7 cut(s) 69, 100, 707, 758, 872, 941, 948
TspGWI ACGGA 2 cut(s) 547, 860
TspRI CASTG 3 cut(s) 274, 622, 817
Van91I CCANNNNNTGG 2 cut(s) 470, 900
VpaK11BI GGWCC 1 cut(s) 115
VspI ATTAAT 1 cut(s) 590
XagI CCTNNNNNAGG 2 cut(s) 10, 506
XapI RAATTY 3 cut(s) 496, 765, 790
XbaI TCTAGA 1 cut(s) 1001
XmnI GAANNNNTTC 3 cut(s) 714, 744, 948
XspI CTAG 4 cut(s) 278, 729, 1002, 1047
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.