MD07G1104800.v1.1

UPF0565 protein C2orf69 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0013327
Physical Location & Seq
Reverse (-)
11858449 .. 11862771
4323 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1104800.v1.1.491

Sequence Viewer

Length: 945 bp
ATGGAACGCTGGCGTGGAGTTTTAAAGGTCCCGTTGAACCCTAATGCCAGGACCTGCTACCAAGTTGCAGCATCTCTCTGCCTATCACCTTCTTCCAACACACTAACTGTTCCTTCAGCAAATGTCATATTTTTCAATGGAGATCGAGTGGCAGGAACCAGGAATCCAGTGATCGAGAGGCTATCTGACTTACAAAATATAGCTGAAATACTGGTTTCAAAGATTGGTGGTTCAACCAATGCTTGGGTTATTGACGCTTCTGTTTTCAATGGGCCTTTTGCTGTGTATCGGGACTTTATTCCATCTGTTAATCAATGGGGAGAGCCAAAATCGTACTGCCCTATTGGATACCCTGCTTCTGGGACCATTATTTCCCTCCTGTCAAGGTGCCTTGAAGAGGTGAAGAAGGACAATGCGATACAGAAAGAACAACTCCAACAAGGAATATCCACATCGCATAATCAAACCAAAACATTACTTTTTGGATTTAGTAAGGGTGGTACTGTCCTTAACCAGTTAGTTACTGAACTTGGGTTCTTGGATGTCAAATCCTCTGGAGGTGCATCACTCATGGAGGAAAAGCATATTGGCGTGGAAGAAGGGATTCATATCGTACCTAGTACAAAAAAAAGCCTTTTAAGCAGCATCAGAGAAATCCATTACGTCGATGTTGGATTAAATTCACCTGGTGCATATGTCACTGACCAAAGTGTGATTGAGAAAATCTCAGAACGCCTGATACAAGGAGCTGCAGCAATCTGTTTTATCCTACACGGGACACCGAGGCAATGGCGTGACAACAGGCGAGCTTGGATATCCAAAGAAAAAGAACAGTTGGTTCATCTGCTGGAGTCTGAAGCTCAGAGAAGTGGAGGAAAATTGCAGGTTCCCACTTTTCGGAGGCAAAGTCGAATTGACAGTCTGAACAAAAAGATGCTGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0565

Protein Analysis

315

Amino Acids

34.66

Weight (kDa)

9.04

Isoelectric Point (pI)

51.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2orf69 PF10561 136 - 284 1.4e-12 C2orf69
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013327)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44850 AT2G44850 AT2G44850
fragaria_vesca FvH4_7g09990
malus_domestica MD07G1104800.v1.1
prunus_persica Prupe.2G132600_v2.0.a1 Prupe.2G132600_v2.0.a1
pyrus_communis pycom07g08990
rosa_chinensis RchiOBHm_Chr1g0347591
rosa_laevigata RLG00000028735
rosa_multiflora Rmu_sc0010621.1_g000015 Rmu_sc0021384.1_g000001
rosa_roxburghii Rroxscaffold_4G00307630
rosa_rugosa Rorug01G0188100
rosa_samantha Rh1CG190000 Rh1DG201000
rosa_wichuraiana Rw0G013660 Rw1G017230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 62, 874
AccB1I GGYRCC 1 cut(s) 387
AccB7I CCANNNNNTGG 1 cut(s) 243
AcsI RAATTY 1 cut(s) 679
AcuI CTGAAG 2 cut(s) 99, 876
AdeI CACNNNGTG 1 cut(s) 689
AfaI GTAC 4 cut(s) 335, 502, 615, 622
AfiI CCNNNNNNNGG 4 cut(s) 243, 359, 397, 897
AgsI TTSAA 6 cut(s) 37, 136, 219, 234, 268, 395
AjnI CCWGG 3 cut(s) 47, 158, 685
AjuI GAANNNNNNNTTGG 2 cut(s) 570, 602
AloI GAACNNNNNNTCC 2 cut(s) 148, 180
AluBI AGCT 4 cut(s) 203, 749, 809, 860
AluI AGCT 4 cut(s) 203, 749, 809, 860
AlwNI CAGNNNCTG 1 cut(s) 54
AoxI GGCC 1 cut(s) 272
ApeKI GCWGC 4 cut(s) 68, 642, 749, 752
ApoI RAATTY 1 cut(s) 679
ArsI GACNNNNNNTTYG 2 cut(s) 904, 936
Asp700I GAANNNNTTC 1 cut(s) 603
AspS9I GGNCC 4 cut(s) 28, 51, 272, 363
AsuHPI GGTGA 3 cut(s) 78, 412, 675
AvaII GGWCC 3 cut(s) 28, 51, 363
BanI GGYRCC 1 cut(s) 387
BbvI GCAGC 4 cut(s) 80, 654, 736, 764
BccI CCATC 1 cut(s) 310
BciT130I CCWGG 3 cut(s) 49, 160, 687
BciVI GTATCC 1 cut(s) 341
BfaI CTAG 1 cut(s) 618
BfmI CTRYAG 1 cut(s) 750
BfuAI ACCTGC 2 cut(s) 62, 874
BfuI GTATCC 1 cut(s) 341
BisI GCNGC 4 cut(s) 69, 643, 750, 753
BlsI GCNGC 4 cut(s) 70, 644, 751, 754
Bme1390I CCNGG 3 cut(s) 49, 160, 687
Bme18I GGWCC 3 cut(s) 28, 51, 363
BmgT120I GGNCC 4 cut(s) 28, 51, 272, 363
BmiI GGNNCC 5 cut(s) 30, 157, 364, 389, 888
BmrFI CCNGG 3 cut(s) 49, 160, 687
BmsI GCATC 4 cut(s) 80, 572, 654, 924
BplI GAGNNNNNCTC 2 cut(s) 710, 742
BpmI CTGGAG 2 cut(s) 576, 869
BsaBI GATNNNNATC 1 cut(s) 608
BsaJI CCNNGG 1 cut(s) 782
BsaXI ACNNNNNCTCC 4 cut(s) 132, 162, 892, 922
Bsc4I CCNNNNNNNGG 4 cut(s) 243, 359, 397, 897
Bse1I ACTGG 3 cut(s) 167, 216, 514
Bse3DI GCAATG 1 cut(s) 794
Bse8I GATNNNNATC 1 cut(s) 608
BseBI CCWGG 3 cut(s) 49, 160, 687
BseDI CCNNGG 1 cut(s) 782
BseGI GGATG 1 cut(s) 547
BseJI GATNNNNATC 1 cut(s) 608
BseLI CCNNNNNNNGG 4 cut(s) 243, 359, 397, 897
BseMI GCAATG 1 cut(s) 794
BseMII CTCAG 2 cut(s) 741, 875
BseNI ACTGG 3 cut(s) 167, 216, 514
BseXI GCAGC 4 cut(s) 80, 654, 736, 764
BshFI GGCC 1 cut(s) 274
BshNI GGYRCC 1 cut(s) 387
BslFI GGGAC 4 cut(s) 14, 305, 376, 790
BslI CCNNNNNNNGG 4 cut(s) 243, 359, 397, 897
BsmFI GGGAC 4 cut(s) 14, 305, 376, 790
BsnI GGCC 1 cut(s) 274
Bsp143I GATC 2 cut(s) 142, 171
BspANI GGCC 1 cut(s) 274
BspCNI CTCAG 2 cut(s) 740, 874
BspLI GGNNCC 5 cut(s) 30, 157, 364, 389, 888
BspMAI CTGCAG 1 cut(s) 754
BspMI ACCTGC 2 cut(s) 62, 874
BspT107I GGYRCC 1 cut(s) 387
BsrDI GCAATG 1 cut(s) 794
BsrI ACTGG 3 cut(s) 167, 216, 514
BssECI CCNNGG 1 cut(s) 782
BssMI GATC 2 cut(s) 142, 171
Bst2UI CCWGG 3 cut(s) 49, 160, 687
Bst4CI ACNGT 4 cut(s) 109, 505, 834, 920
Bst6I CTCTTC 1 cut(s) 390
BstC8I GCNNGC 2 cut(s) 11, 807
BstDEI CTNAG 2 cut(s) 727, 861
BstENI CCTNNNNNAGG 1 cut(s) 395
BstF5I GGATG 1 cut(s) 547
BstKTI GATC 2 cut(s) 145, 174
BstMBI GATC 2 cut(s) 142, 171
BstMWI GCNNNNNNNGC 1 cut(s) 639
BstNI CCWGG 3 cut(s) 49, 160, 687
BstSCI CCNGG 3 cut(s) 47, 158, 685
BstSFI CTRYAG 1 cut(s) 750
BstV1I GCAGC 4 cut(s) 80, 654, 736, 764
BsuI GTATCC 1 cut(s) 341
BsuRI GGCC 1 cut(s) 274
BtgZI GCGATG 1 cut(s) 438
BtsCI GGATG 1 cut(s) 547
BtsIMutI CAGTG 2 cut(s) 174, 699
BveI ACCTGC 2 cut(s) 62, 874
Cac8I GCNNGC 2 cut(s) 11, 807
CaiI CAGNNNCTG 1 cut(s) 54
Cfr13I GGNCC 4 cut(s) 28, 51, 272, 363
CseI GACGC 1 cut(s) 263
CsiI ACCWGGT 1 cut(s) 685
Csp6I GTAC 4 cut(s) 334, 501, 614, 621
CviAII CATG 1 cut(s) 571
CviJI RGCY 8 cut(s) 181, 203, 274, 325, 633, 749, 809, 860
CviKI_1 RGCY 8 cut(s) 181, 203, 274, 325, 633, 749, 809, 860
CviQI GTAC 4 cut(s) 334, 501, 614, 621
DdeI CTNAG 2 cut(s) 727, 861
DpnI GATC 2 cut(s) 144, 173
DpnII GATC 2 cut(s) 142, 171
DraI TTTAAA 1 cut(s) 24
DraIII CACNNNGTG 1 cut(s) 689
Eam1104I CTCTTC 1 cut(s) 390
EarI CTCTTC 1 cut(s) 390
Eco32I GATATC 1 cut(s) 816
Eco47I GGWCC 3 cut(s) 28, 51, 363
Eco57I CTGAAG 2 cut(s) 99, 876
EcoNI CCTNNNNNAGG 1 cut(s) 395
EcoO109I RGGNCCY 2 cut(s) 28, 51
EcoRII CCWGG 3 cut(s) 47, 158, 685
EcoRV GATATC 1 cut(s) 816
FaeI CATG 1 cut(s) 574
FaiI YATR 8 cut(s) 128, 200, 459, 572, 585, 609, 694, 696
FaqI GGGAC 4 cut(s) 14, 305, 376, 790
FatI CATG 1 cut(s) 570
FauNDI CATATG 1 cut(s) 694
Fnu4HI GCNGC 4 cut(s) 69, 643, 750, 753
FokI GGATG 1 cut(s) 554
Fsp4HI GCNGC 4 cut(s) 69, 643, 750, 753
FspBI CTAG 1 cut(s) 618
GluI GCNGC 4 cut(s) 69, 643, 750, 753
GsuI CTGGAG 2 cut(s) 576, 869
HaeIII GGCC 1 cut(s) 274
HgaI GACGC 1 cut(s) 263
Hin1II CATG 1 cut(s) 574
HinfI GANTC 3 cut(s) 163, 604, 851
HphI GGTGA 3 cut(s) 78, 412, 675
Hpy188I TCNGA 7 cut(s) 187, 650, 730, 856, 864, 900, 924
Hpy188III TCNNGA 3 cut(s) 175, 290, 555
Hpy99I CGWCG 1 cut(s) 668
HpyAV CCTTC 4 cut(s) 99, 123, 400, 593
HpyCH4III ACNGT 4 cut(s) 109, 505, 834, 920
HpyCH4IV ACGT 1 cut(s) 663
HpyCH4V TGCA 5 cut(s) 68, 563, 692, 752, 883
HpyF10VI GCNNNNNNNGC 1 cut(s) 639
HpyF3I CTNAG 2 cut(s) 727, 861
HpySE526I ACGT 1 cut(s) 663
Hsp92II CATG 1 cut(s) 574
Kzo9I GATC 2 cut(s) 142, 171
LmnI GCTCC 1 cut(s) 746
Lsp1109I GCAGC 4 cut(s) 80, 654, 736, 764
LweI GCATC 4 cut(s) 80, 572, 654, 924
MabI ACCWGGT 1 cut(s) 685
MaeI CTAG 1 cut(s) 618
MaeII ACGT 1 cut(s) 663
MaeIII GTNAC 3 cut(s) 520, 697, 794
MalI GATC 2 cut(s) 144, 173
MboI GATC 2 cut(s) 142, 171
MboII GAAGA 4 cut(s) 84, 407, 415, 608
MluCI AATT 3 cut(s) 679, 878, 912
MlyI GAGTC 1 cut(s) 860
MmeI TCCRAC 3 cut(s) 120, 460, 652
MnlI CCTC 9 cut(s) 171, 386, 391, 551, 562, 568, 777, 866, 894
MroXI GAANNNNTTC 1 cut(s) 603
MseI TTAA 5 cut(s) 23, 309, 510, 638, 677
MspR9I CCNGG 3 cut(s) 49, 160, 687
MvaI CCWGG 3 cut(s) 49, 160, 687
MwoI GCNNNNNNNGC 1 cut(s) 639
NdeI CATATG 1 cut(s) 694
NdeII GATC 2 cut(s) 142, 171
NlaIII CATG 1 cut(s) 574
NlaIV GGNNCC 5 cut(s) 30, 157, 364, 389, 888
NmuCI GTSAC 2 cut(s) 697, 794
PdmI GAANNNNTTC 1 cut(s) 603
PfeI GAWTC 2 cut(s) 163, 604
PflMI CCANNNNNTGG 1 cut(s) 243
PkrI GCNGC 4 cut(s) 70, 644, 751, 754
PleI GAGTC 1 cut(s) 859
PpsI GAGTC 1 cut(s) 859
PpuMI RGGWCCY 2 cut(s) 28, 51
Psp5II RGGWCCY 2 cut(s) 28, 51
Psp6I CCWGG 3 cut(s) 47, 158, 685
PspGI CCWGG 3 cut(s) 47, 158, 685
PspN4I GGNNCC 5 cut(s) 30, 157, 364, 389, 888
PspPI GGNCC 4 cut(s) 28, 51, 272, 363
PspPPI RGGWCCY 2 cut(s) 28, 51
PsrI GAACNNNNNNTAC 2 cut(s) 723, 755
PstI CTGCAG 1 cut(s) 754
PstNI CAGNNNCTG 1 cut(s) 54
RsaI GTAC 4 cut(s) 335, 502, 615, 622
RsaNI GTAC 4 cut(s) 334, 501, 614, 621
SaqAI TTAA 5 cut(s) 23, 309, 510, 638, 677
SatI GCNGC 4 cut(s) 69, 643, 750, 753
Sau3AI GATC 2 cut(s) 142, 171
Sau96I GGNCC 4 cut(s) 28, 51, 272, 363
SchI GAGTC 1 cut(s) 860
ScrFI CCNGG 3 cut(s) 49, 160, 687
SexAI ACCWGGT 1 cut(s) 685
SfaNI GCATC 4 cut(s) 80, 572, 654, 924
SfcI CTRYAG 1 cut(s) 750
SinI GGWCC 3 cut(s) 28, 51, 363
Sse9I AATT 3 cut(s) 679, 878, 912
SspMI CTAG 1 cut(s) 618
StyD4I CCNGG 3 cut(s) 47, 158, 685
TaaI ACNGT 4 cut(s) 109, 505, 834, 920
TaiI ACGT 1 cut(s) 666
TaqI TCGA 4 cut(s) 145, 174, 666, 910
TasI AATT 3 cut(s) 679, 878, 912
TatI WGTACW 1 cut(s) 620
TfiI GAWTC 2 cut(s) 163, 604
Tru1I TTAA 5 cut(s) 23, 309, 510, 638, 677
Tru9I TTAA 5 cut(s) 23, 309, 510, 638, 677
TscAI CASTG 2 cut(s) 174, 706
TseFI GTSAC 2 cut(s) 697, 794
TseI GCWGC 4 cut(s) 68, 642, 749, 752
Tsp45I GTSAC 2 cut(s) 697, 794
TspDTI ATGAA 2 cut(s) 596, 830
TspRI CASTG 2 cut(s) 174, 706
Van91I CCANNNNNTGG 1 cut(s) 243
VpaK11BI GGWCC 3 cut(s) 28, 51, 363
XagI CCTNNNNNAGG 1 cut(s) 395
XapI RAATTY 1 cut(s) 679
XmnI GAANNNNTTC 1 cut(s) 603
XspI CTAG 1 cut(s) 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.