FvH4_7g09990

UPF0565 protein C2orf69 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0013327
Physical Location & Seq
Reverse (-)
9470120 .. 9473140
3021 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g09990.t1

Sequence Viewer

Length: 969 bp
ATGGACCGCTGGTGTGGAGTTCTGAATGTCCCATTACATCCTCTTGCTCGGTCCTGCTACCGTGTTGCAGCATCTCTCTGCCTTTCCCCTACTTCCAAAACACTAATTGTTCCTTCAGCAAATGCCATCTTTTTCGGCGGAGATCGAGTGGCAGGCACTGGTAATGAAGTTGTTGAGAGGTTATCAGACTTGCAAAATATAGCTGAAATACTGGTTTCAAAGATTGGTGGTTCAGTCAATGCTTGGGTTATTGAAGCTTCTGATTTCAATGGGCCTTTTGCTGTGTACAAGGACTTCATACCATCTGTTAATCAATGGGGAGAGCCAAAGTTATACTGCCCTGATGGATATCCAGCTTCTGGATCAATTGTTTCACTCTTGTCAAGTTTCCTTGAAGAGGTGAAGAGTCACATAGTGAGACAGAAAGCATTGCCCTCACCCGGAATATCCACATCGCATTTTAGTCAACCTAAGATATTAATTTTTGGATTTAGCAAGGGTGGCACTGTGCTTAACCAGATAGTTACTGAGCTTGGCTTCTCAGATATTGAATTATCTAGAGATGAGCTCATGGAGGAAAAGGAAATTAGTATGGAAGAAGATATTCATATCATACCTAGAACAAAGGAAACCCTTTTGACCAGTATCAGAGAGATTCATTATGTGGATGTTGGATTAAATTCACCTGGTGCATATATCACTGATGATGGTGCAATTGAGAAAATCTCCAAACGCCTAACACAAGTAGATAAAGGGATCTGTTTTATCCTTCATGGAACACCCAAGCAATGGCGTGACAGCAGACGTTCTTGGATATGCGATGAAAAAGACAAGTTGGTTGATCTGCTTGAATATGAAGCTCAGAGAAGCGGTGGAAAATTACAGGTTTGTGAGAAATTCTATTTTGCTGATAGGTCACCTGATTTGCAGATGCATTTTGAAATAATTGAAAAATTGGATGTCAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0565

Protein Analysis

323

Amino Acids

35.85

Weight (kDa)

5.28

Isoelectric Point (pI)

50.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2orf69 PF10561 153 - 284 2.8e-09 C2orf69
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013327)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44850 AT2G44850 AT2G44850
fragaria_vesca FvH4_7g09990
malus_domestica MD07G1104800.v1.1
prunus_persica Prupe.2G132600_v2.0.a1 Prupe.2G132600_v2.0.a1
pyrus_communis pycom07g08990
rosa_chinensis RchiOBHm_Chr1g0347591
rosa_laevigata RLG00000028735
rosa_multiflora Rmu_sc0010621.1_g000015 Rmu_sc0021384.1_g000001
rosa_roxburghii Rroxscaffold_4G00307630
rosa_rugosa Rorug01G0188100
rosa_samantha Rh1CG190000 Rh1DG201000
rosa_wichuraiana Rw0G013660 Rw1G017230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 359, 789
AciI CCGC 3 cut(s) 7, 138, 870
AclWI GGATC 2 cut(s) 370, 764
AcsI RAATTY 2 cut(s) 679, 896
AcuI CTGAAG 1 cut(s) 99
AdeI CACNNNGTG 2 cut(s) 415, 689
AfaI GTAC 1 cut(s) 287
AfiI CCNNNNNNNGG 4 cut(s) 359, 397, 440, 789
AgsI TTSAA 8 cut(s) 219, 254, 268, 395, 551, 851, 941, 950
AjnI CCWGG 1 cut(s) 685
AluBI AGCT 6 cut(s) 203, 257, 356, 532, 568, 860
AluI AGCT 6 cut(s) 203, 257, 356, 532, 568, 860
Alw21I GWGCWC 1 cut(s) 570
Alw26I GTCTC 1 cut(s) 412
AlwI GGATC 2 cut(s) 370, 764
AlwNI CAGNNNCTG 2 cut(s) 158, 359
AoxI GGCC 1 cut(s) 272
ApeKI GCWGC 1 cut(s) 68
ApoI RAATTY 2 cut(s) 679, 896
AseI ATTAAT 1 cut(s) 479
Asp700I GAANNNNTTC 1 cut(s) 603
AspS9I GGNCC 3 cut(s) 4, 51, 272
AsuC2I CCSGG 1 cut(s) 441
AsuHPI GGTGA 4 cut(s) 412, 429, 675, 909
AvaII GGWCC 2 cut(s) 4, 51
BanII GRGCYC 1 cut(s) 570
BarI GAAGNNNNNNTAC 2 cut(s) 278, 310
Bbv12I GWGCWC 1 cut(s) 570
BbvI GCAGC 1 cut(s) 80
BccI CCATC 4 cut(s) 134, 310, 338, 701
BciT130I CCWGG 1 cut(s) 687
BcnI CCSGG 1 cut(s) 441
BcoDI GTCTC 1 cut(s) 412
BfaI CTAG 2 cut(s) 558, 618
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
Bme1390I CCNGG 2 cut(s) 441, 687
Bme18I GGWCC 2 cut(s) 4, 51
BmgT120I GGNCC 3 cut(s) 4, 51, 272
BmrFI CCNGG 2 cut(s) 441, 687
BmsI GCATC 2 cut(s) 80, 921
BplI GAGNNNNNCTC 4 cut(s) 552, 584, 710, 742
BpuMI CCSGG 1 cut(s) 441
BsaBI GATNNNNATC 1 cut(s) 348
BsaXI ACNNNNNCTCC 2 cut(s) 132, 162
Bsc4I CCNNNNNNNGG 4 cut(s) 359, 397, 440, 789
Bse1I ACTGG 3 cut(s) 163, 216, 642
Bse3DI GCAATG 2 cut(s) 428, 794
Bse8I GATNNNNATC 1 cut(s) 348
BseBI CCWGG 1 cut(s) 687
BseGI GGATG 3 cut(s) 37, 673, 964
BseJI GATNNNNATC 1 cut(s) 348
BseLI CCNNNNNNNGG 4 cut(s) 359, 397, 440, 789
BseMI GCAATG 2 cut(s) 428, 794
BseMII CTCAG 3 cut(s) 519, 555, 875
BseNI ACTGG 3 cut(s) 163, 216, 642
BseXI GCAGC 1 cut(s) 80
BshFI GGCC 1 cut(s) 274
BsiHKAI GWGCWC 1 cut(s) 570
BsiSI CCGG 1 cut(s) 441
BslFI GGGAC 1 cut(s) 14
BslI CCNNNNNNNGG 4 cut(s) 359, 397, 440, 789
BsmAI GTCTC 1 cut(s) 412
BsmFI GGGAC 1 cut(s) 14
BsnI GGCC 1 cut(s) 274
Bsp1286I GDGCHC 1 cut(s) 570
Bsp1407I TGTACA 1 cut(s) 285
Bsp143I GATC 4 cut(s) 142, 362, 756, 841
BspACI CCGC 3 cut(s) 7, 138, 870
BspANI GGCC 1 cut(s) 274
BspCNI CTCAG 3 cut(s) 520, 554, 874
BspPI GGATC 2 cut(s) 370, 764
BsrDI GCAATG 2 cut(s) 428, 794
BsrGI TGTACA 1 cut(s) 285
BsrI ACTGG 3 cut(s) 163, 216, 642
BssMI GATC 4 cut(s) 142, 362, 756, 841
Bst2UI CCWGG 1 cut(s) 687
Bst4CI ACNGT 2 cut(s) 62, 508
Bst6I CTCTTC 2 cut(s) 390, 398
BstAUI TGTACA 1 cut(s) 285
BstC8I GCNNGC 1 cut(s) 154
BstDEI CTNAG 4 cut(s) 471, 528, 541, 861
BstEII GGTNACC 1 cut(s) 915
BstENI CCTNNNNNAGG 1 cut(s) 395
BstF5I GGATG 3 cut(s) 37, 673, 964
BstKTI GATC 4 cut(s) 145, 365, 759, 844
BstMAI GTCTC 1 cut(s) 412
BstMBI GATC 4 cut(s) 142, 362, 756, 841
BstMWI GCNNNNNNNGC 1 cut(s) 501
BstNI CCWGG 1 cut(s) 687
BstPI GGTNACC 1 cut(s) 915
BstSCI CCNGG 2 cut(s) 439, 685
BstV1I GCAGC 1 cut(s) 80
BstX2I RGATCY 1 cut(s) 756
BstYI RGATCY 1 cut(s) 756
BsuRI GGCC 1 cut(s) 274
BtgZI GCGATG 2 cut(s) 438, 834
BtsCI GGATG 3 cut(s) 37, 673, 964
BtsIMutI CAGTG 3 cut(s) 156, 504, 699
Cac8I GCNNGC 1 cut(s) 154
CaiI CAGNNNCTG 2 cut(s) 158, 359
Cfr13I GGNCC 3 cut(s) 4, 51, 272
CsiI ACCWGGT 1 cut(s) 685
Csp6I GTAC 1 cut(s) 286
CviAII CATG 2 cut(s) 571, 773
CviJI RGCY 9 cut(s) 203, 257, 274, 325, 356, 532, 537, 568, 860
CviKI_1 RGCY 9 cut(s) 203, 257, 274, 325, 356, 532, 537, 568, 860
CviQI GTAC 1 cut(s) 286
DdeI CTNAG 4 cut(s) 471, 528, 541, 861
DpnI GATC 4 cut(s) 144, 364, 758, 843
DpnII GATC 4 cut(s) 142, 362, 756, 841
DraIII CACNNNGTG 2 cut(s) 415, 689
Eam1104I CTCTTC 2 cut(s) 390, 398
EarI CTCTTC 2 cut(s) 390, 398
EciI GGCGGA 1 cut(s) 153
Ecl136II GAGCTC 1 cut(s) 568
Eco24I GRGCYC 1 cut(s) 570
Eco32I GATATC 1 cut(s) 350
Eco47I GGWCC 2 cut(s) 4, 51
Eco53kI GAGCTC 1 cut(s) 568
Eco57I CTGAAG 1 cut(s) 99
Eco91I GGTNACC 1 cut(s) 915
EcoICRI GAGCTC 1 cut(s) 568
EcoNI CCTNNNNNAGG 1 cut(s) 395
EcoO65I GGTNACC 1 cut(s) 915
EcoRII CCWGG 1 cut(s) 685
EcoRV GATATC 1 cut(s) 350
EcoT22I ATGCAT 1 cut(s) 936
EcoT38I GRGCYC 1 cut(s) 570
FaeI CATG 2 cut(s) 574, 776
FaqI GGGAC 1 cut(s) 14
FatI CATG 2 cut(s) 570, 772
Fnu4HI GCNGC 1 cut(s) 69
FokI GGATG 2 cut(s) 24, 680
FriOI GRGCYC 1 cut(s) 570
Fsp4HI GCNGC 1 cut(s) 69
FspBI CTAG 2 cut(s) 558, 618
GluI GCNGC 1 cut(s) 69
HaeIII GGCC 1 cut(s) 274
HapII CCGG 1 cut(s) 441
Hin1II CATG 2 cut(s) 574, 776
HincII GTYRAC 1 cut(s) 467
HindII GTYRAC 1 cut(s) 467
HindIII AAGCTT 1 cut(s) 255
HinfI GANTC 2 cut(s) 406, 655
HpaII CCGG 1 cut(s) 441
HphI GGTGA 4 cut(s) 412, 429, 675, 909
Hpy166II GTNNAC 2 cut(s) 286, 467
Hpy188I TCNGA 6 cut(s) 24, 187, 262, 544, 650, 864
Hpy188III TCNNGA 2 cut(s) 360, 558
Hpy8I GTNNAC 2 cut(s) 286, 467
HpyAV CCTTC 2 cut(s) 123, 779
HpyCH4III ACNGT 2 cut(s) 62, 508
HpyCH4IV ACGT 1 cut(s) 805
HpyCH4V TGCA 6 cut(s) 68, 193, 692, 713, 928, 934
HpyF10VI GCNNNNNNNGC 1 cut(s) 501
HpyF3I CTNAG 4 cut(s) 471, 528, 541, 861
HpySE526I ACGT 1 cut(s) 805
Hsp92II CATG 2 cut(s) 574, 776
Kzo9I GATC 4 cut(s) 142, 362, 756, 841
Lsp1109I GCAGC 1 cut(s) 80
LweI GCATC 2 cut(s) 80, 921
MabI ACCWGGT 1 cut(s) 685
MaeI CTAG 2 cut(s) 558, 618
MaeII ACGT 1 cut(s) 805
MaeIII GTNAC 4 cut(s) 407, 523, 794, 915
MalI GATC 4 cut(s) 144, 364, 758, 843
MboI GATC 4 cut(s) 142, 362, 756, 841
MboII GAAGA 4 cut(s) 407, 415, 608, 611
MfeI CAATTG 2 cut(s) 366, 714
MflI RGATCY 1 cut(s) 756
MhlI GDGCHC 1 cut(s) 570
MlyI GAGTC 1 cut(s) 415
MmeI TCCRAC 1 cut(s) 652
MnlI CCTC 5 cut(s) 51, 171, 391, 445, 568
Mph1103I ATGCAT 1 cut(s) 936
MroXI GAANNNNTTC 1 cut(s) 603
MseI TTAA 5 cut(s) 309, 479, 513, 677, 967
MspA1I CMGCKG 1 cut(s) 9
MspI CCGG 1 cut(s) 441
MspR9I CCNGG 2 cut(s) 441, 687
MunI CAATTG 2 cut(s) 366, 714
MvaI CCWGG 1 cut(s) 687
MwoI GCNNNNNNNGC 1 cut(s) 501
NciI CCSGG 1 cut(s) 441
NdeII GATC 4 cut(s) 142, 362, 756, 841
NlaIII CATG 2 cut(s) 574, 776
NmuCI GTSAC 3 cut(s) 407, 794, 915
NsiI ATGCAT 1 cut(s) 936
PdmI GAANNNNTTC 1 cut(s) 603
PfeI GAWTC 1 cut(s) 655
PflMI CCANNNNNTGG 2 cut(s) 359, 789
PkrI GCNGC 1 cut(s) 70
PleI GAGTC 1 cut(s) 414
PpsI GAGTC 1 cut(s) 414
PshBI ATTAAT 1 cut(s) 479
Psp124BI GAGCTC 1 cut(s) 570
Psp6I CCWGG 1 cut(s) 685
PspEI GGTNACC 1 cut(s) 915
PspGI CCWGG 1 cut(s) 685
PspPI GGNCC 3 cut(s) 4, 51, 272
PstNI CAGNNNCTG 2 cut(s) 158, 359
PsuI RGATCY 1 cut(s) 756
RsaI GTAC 1 cut(s) 287
RsaNI GTAC 1 cut(s) 286
SacI GAGCTC 1 cut(s) 570
SaqAI TTAA 5 cut(s) 309, 479, 513, 677, 967
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 4 cut(s) 142, 362, 756, 841
Sau96I GGNCC 3 cut(s) 4, 51, 272
SchI GAGTC 1 cut(s) 415
ScrFI CCNGG 2 cut(s) 441, 687
SduI GDGCHC 1 cut(s) 570
SexAI ACCWGGT 1 cut(s) 685
SfaNI GCATC 2 cut(s) 80, 921
SinI GGWCC 2 cut(s) 4, 51
SsiI CCGC 3 cut(s) 7, 138, 870
SspMI CTAG 2 cut(s) 558, 618
SstI GAGCTC 1 cut(s) 570
StyD4I CCNGG 2 cut(s) 439, 685
TaaI ACNGT 2 cut(s) 62, 508
TaiI ACGT 1 cut(s) 808
TaqI TCGA 1 cut(s) 145
TaqII GACCGA 1 cut(s) 39
TatI WGTACW 1 cut(s) 285
TfiI GAWTC 1 cut(s) 655
Tru1I TTAA 5 cut(s) 309, 479, 513, 677, 967
Tru9I TTAA 5 cut(s) 309, 479, 513, 677, 967
TscAI CASTG 3 cut(s) 163, 511, 706
TseFI GTSAC 3 cut(s) 407, 794, 915
TseI GCWGC 1 cut(s) 68
Tsp45I GTSAC 3 cut(s) 407, 794, 915
TspDTI ATGAA 7 cut(s) 180, 286, 596, 647, 761, 837, 870
TspRI CASTG 3 cut(s) 163, 511, 706
Van91I CCANNNNNTGG 2 cut(s) 359, 789
VpaK11BI GGWCC 2 cut(s) 4, 51
VspI ATTAAT 1 cut(s) 479
XagI CCTNNNNNAGG 1 cut(s) 395
XapI RAATTY 2 cut(s) 679, 896
XbaI TCTAGA 1 cut(s) 557
XmnI GAANNNNTTC 1 cut(s) 603
XspI CTAG 2 cut(s) 558, 618
Zsp2I ATGCAT 1 cut(s) 936
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.