Rorug01G0188100

UPF0565 protein C2orf69 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0013327
Physical Location & Seq
Reverse (-)
25999299 .. 26000114
816 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0188100.1

Sequence Viewer

Length: 816 bp
ATGGAACCACGAACTCTGCAACTAATGGAGCTCCAAACCCAGCAACAAATCGAGGATGGAGGAAACAACCAAGCAGCCAGGAGTAGTGCCAACACGGATTTTTGGCGAAGCCGTACCAGGTGGATTCCTACTCCAGATCAAATAAGAATCCTCAAGGATCTTTACTACGACAAGGGAGTTAAGTGCCCAACTACAGAGCACATTCACGAGATCTGTCTCCAGCTGAACCAGTATGGACAGGTTGAGGGCAAGAACATTTACTTTTGGTTCCAGAACGTCAGGGCTCGAGAGAAGCAGATGAAGAGGTGCAATCAAGCTGCTCAAGTGCCCATGGGAACTAGTTCCACTGGTACTGGTGGATCCATTGATATTAATTTTGGGTCCACTAGTCCTACTGGTGCTGGTGGATCCATCGACATCAATTTTGGGCCAGCTGGTGGATCCATTGACATCAATTTTGGGTCCACTAGTTCTACTGGTGCTGGTGGATCCATTGATCTCAATTTTGGGCCATGGGTCGACTGCAGTGTTGACCCGTATTTCTCCTCACCCTTCACTACTAGTACTAGTACTACTTTCTTTGGCAGGAATGAAGAACAAACTTCCATGGAACAACGAGGAGAAGATCACCAGGAGGTTGAAACTCTTCCTTTGTTCCCCATGCCCGGTGAGGACATCCTTGGCAACCTAAAGACTACTTCCGAGGGAGGTAGCGGCTATGGCTACTATTCCGGTGGCTCGGACGGCTACGACGGTGGCTCTCACATTTCCCTTGAGCTCAGCCTCAACCCATCCGGAGCTGGTGACTTGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0565

Protein Analysis

271

Amino Acids

29.32

Weight (kDa)

4.6

Isoelectric Point (pI)

44.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 38 - 99 2.7e-09 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013327)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44850 AT2G44850 AT2G44850
fragaria_vesca FvH4_7g09990
malus_domestica MD07G1104800.v1.1
prunus_persica Prupe.2G132600_v2.0.a1 Prupe.2G132600_v2.0.a1
pyrus_communis pycom07g08990
rosa_chinensis RchiOBHm_Chr1g0347591
rosa_laevigata RLG00000028735
rosa_multiflora Rmu_sc0010621.1_g000015 Rmu_sc0021384.1_g000001
rosa_roxburghii Rroxscaffold_4G00307630
rosa_rugosa Rorug01G0188100
rosa_samantha Rh1CG190000 Rh1DG201000
rosa_wichuraiana Rw0G013660 Rw1G017230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 437
AccI GTMKAC 1 cut(s) 519
AccIII TCCGGA 1 cut(s) 794
AciI CCGC 1 cut(s) 714
AclWI GGATC 9 cut(s) 165, 354, 367, 402, 415, 435, 448, 483, 496
AfaI GTAC 4 cut(s) 115, 352, 565, 571
AfiI CCNNNNNNNGG 2 cut(s) 437, 665
AgsI TTSAA 1 cut(s) 641
AhlI ACTAGT 5 cut(s) 338, 386, 467, 560, 566
AjnI CCWGG 3 cut(s) 77, 116, 630
AluBI AGCT 6 cut(s) 31, 223, 317, 434, 778, 800
AluI AGCT 6 cut(s) 31, 223, 317, 434, 778, 800
Alw21I GWGCWC 3 cut(s) 33, 201, 780
Alw26I GTCTC 1 cut(s) 221
AlwI GGATC 9 cut(s) 165, 354, 367, 402, 415, 435, 448, 483, 496
Ama87I CYCGRG 1 cut(s) 285
Aor13HI TCCGGA 1 cut(s) 794
AoxI GGCC 2 cut(s) 428, 509
ApeKI GCWGC 2 cut(s) 74, 317
ArsI GACNNNNNNTTYG 4 cut(s) 407, 439, 440, 472
AseI ATTAAT 1 cut(s) 372
Asp700I GAANNNNTTC 2 cut(s) 340, 645
AspS9I GGNCC 4 cut(s) 381, 428, 462, 509
AsuC2I CCSGG 1 cut(s) 666
AsuHPI GGTGA 4 cut(s) 540, 620, 680, 815
AvaI CYCGRG 1 cut(s) 285
AvaII GGWCC 2 cut(s) 381, 462
BaeGI GKGCMC 2 cut(s) 188, 330
BamHI GGATCC 4 cut(s) 359, 407, 440, 488
BanII GRGCYC 3 cut(s) 33, 286, 780
BauI CACGAG 1 cut(s) 206
Bbv12I GWGCWC 3 cut(s) 33, 201, 780
BbvI GCAGC 2 cut(s) 86, 304
BccI CCATC 3 cut(s) 50, 419, 799
BceAI ACGGC 2 cut(s) 96, 760
BciT130I CCWGG 3 cut(s) 79, 118, 632
BcnI CCSGG 1 cut(s) 666
BcoDI GTCTC 1 cut(s) 221
BcuI ACTAGT 5 cut(s) 338, 386, 467, 560, 566
BfaI CTAG 5 cut(s) 339, 387, 468, 561, 567
BfmI CTRYAG 2 cut(s) 192, 523
BglII AGATCT 1 cut(s) 210
BisI GCNGC 3 cut(s) 75, 318, 715
BlpI GCTNAGC 1 cut(s) 779
BlsI GCNGC 3 cut(s) 76, 319, 716
BmcAI AGTACT 2 cut(s) 565, 571
Bme1390I CCNGG 4 cut(s) 79, 118, 632, 666
Bme18I GGWCC 2 cut(s) 381, 462
BmeT110I CYCGRG 1 cut(s) 285
BmgT120I GGNCC 4 cut(s) 381, 428, 462, 509
BmiI GGNNCC 8 cut(s) 6, 269, 361, 382, 409, 442, 463, 490
BmrFI CCNGG 4 cut(s) 79, 118, 632, 666
BpmI CTGGAG 2 cut(s) 117, 203
Bpu1102I GCTNAGC 1 cut(s) 779
BpuEI CTTGAG 3 cut(s) 137, 306, 794
BpuMI CCSGG 1 cut(s) 666
BsaJI CCNNGG 5 cut(s) 330, 512, 606, 679, 702
BsaWI WCCGGW 2 cut(s) 731, 794
Bsc4I CCNNNNNNNGG 2 cut(s) 437, 665
Bse1I ACTGG 5 cut(s) 229, 352, 358, 400, 481
BseAI TCCGGA 1 cut(s) 794
BseBI CCWGG 3 cut(s) 79, 118, 632
BseDI CCNNGG 5 cut(s) 330, 512, 606, 679, 702
BseGI GGATG 3 cut(s) 61, 675, 791
BseLI CCNNNNNNNGG 2 cut(s) 437, 665
BseMII CTCAG 1 cut(s) 793
BseNI ACTGG 5 cut(s) 229, 352, 358, 400, 481
BseRI GAGGAG 2 cut(s) 535, 633
BseSI GKGCMC 2 cut(s) 188, 330
BseXI GCAGC 2 cut(s) 86, 304
BseYI CCCAGC 1 cut(s) 39
BshFI GGCC 2 cut(s) 430, 511
BsiHKAI GWGCWC 3 cut(s) 33, 201, 780
BsiHKCI CYCGRG 1 cut(s) 285
BsiSI CCGG 3 cut(s) 666, 732, 795
BslI CCNNNNNNNGG 2 cut(s) 437, 665
BsmAI GTCTC 1 cut(s) 221
BsnI GGCC 2 cut(s) 430, 511
BsoBI CYCGRG 1 cut(s) 285
Bsp1286I GDGCHC 6 cut(s) 33, 188, 201, 286, 330, 780
Bsp13I TCCGGA 1 cut(s) 794
Bsp143I GATC 9 cut(s) 136, 157, 210, 359, 407, 440, 488, 496, 625
Bsp1720I GCTNAGC 1 cut(s) 779
Bsp19I CCATGG 3 cut(s) 330, 512, 606
BspACI CCGC 1 cut(s) 714
BspANI GGCC 2 cut(s) 430, 511
BspCNI CTCAG 1 cut(s) 792
BspEI TCCGGA 1 cut(s) 794
BspLI GGNNCC 8 cut(s) 6, 269, 361, 382, 409, 442, 463, 490
BspMAI CTGCAG 1 cut(s) 527
BspPI GGATC 9 cut(s) 165, 354, 367, 402, 415, 435, 448, 483, 496
BsrI ACTGG 5 cut(s) 229, 352, 358, 400, 481
BssECI CCNNGG 5 cut(s) 330, 512, 606, 679, 702
BssMI GATC 9 cut(s) 136, 157, 210, 359, 407, 440, 488, 496, 625
BssSI CACGAG 1 cut(s) 206
BssT1I CCWWGG 4 cut(s) 330, 512, 606, 679
Bst2BI CACGAG 1 cut(s) 206
Bst2UI CCWGG 3 cut(s) 79, 118, 632
Bst4CI ACNGT 1 cut(s) 755
Bst6I CTCTTC 2 cut(s) 296, 651
BstC8I GCNNGC 1 cut(s) 432
BstDEI CTNAG 2 cut(s) 779, 813
BstDSI CCRYGG 3 cut(s) 330, 512, 606
BstF5I GGATG 3 cut(s) 61, 675, 791
BstKTI GATC 9 cut(s) 139, 160, 213, 362, 410, 443, 491, 499, 628
BstMAI GTCTC 1 cut(s) 221
BstMBI GATC 9 cut(s) 136, 157, 210, 359, 407, 440, 488, 496, 625
BstMWI GCNNNNNNNGC 2 cut(s) 720, 744
BstNI CCWGG 3 cut(s) 79, 118, 632
BstSCI CCNGG 4 cut(s) 77, 116, 630, 664
BstSFI CTRYAG 2 cut(s) 192, 523
BstSLI GKGCMC 2 cut(s) 188, 330
BstV1I GCAGC 2 cut(s) 86, 304
BstX2I RGATCY 6 cut(s) 157, 210, 359, 407, 440, 488
BstYI RGATCY 6 cut(s) 157, 210, 359, 407, 440, 488
BsuRI GGCC 2 cut(s) 430, 511
BtgI CCRYGG 3 cut(s) 330, 512, 606
BtsCI GGATG 3 cut(s) 61, 675, 791
BtsI GCAGTG 1 cut(s) 532
BtsIMutI CAGTG 2 cut(s) 345, 532
Cac8I GCNNGC 1 cut(s) 432
Cfr13I GGNCC 4 cut(s) 381, 428, 462, 509
CsiI ACCWGGT 1 cut(s) 116
Csp6I GTAC 4 cut(s) 114, 351, 564, 570
CviAII CATG 4 cut(s) 331, 513, 607, 661
CviQI GTAC 4 cut(s) 114, 351, 564, 570
DdeI CTNAG 2 cut(s) 779, 813
DpnI GATC 9 cut(s) 138, 159, 212, 361, 409, 442, 490, 498, 627
DpnII GATC 9 cut(s) 136, 157, 210, 359, 407, 440, 488, 496, 625
Eam1104I CTCTTC 2 cut(s) 296, 651
EarI CTCTTC 2 cut(s) 296, 651
Ecl136II GAGCTC 2 cut(s) 31, 778
Eco130I CCWWGG 4 cut(s) 330, 512, 606, 679
Eco24I GRGCYC 3 cut(s) 33, 286, 780
Eco47I GGWCC 2 cut(s) 381, 462
Eco53kI GAGCTC 2 cut(s) 31, 778
Eco88I CYCGRG 1 cut(s) 285
EcoICRI GAGCTC 2 cut(s) 31, 778
EcoRII CCWGG 3 cut(s) 77, 116, 630
EcoT14I CCWWGG 4 cut(s) 330, 512, 606, 679
EcoT38I GRGCYC 3 cut(s) 33, 286, 780
ErhI CCWWGG 4 cut(s) 330, 512, 606, 679
FaeI CATG 4 cut(s) 334, 516, 610, 664
FaiI YATR 6 cut(s) 234, 332, 514, 608, 662, 720
FatI CATG 4 cut(s) 330, 512, 606, 660
FblI GTMKAC 1 cut(s) 519
Fnu4HI GCNGC 3 cut(s) 75, 318, 715
FokI GGATG 3 cut(s) 68, 662, 778
FriOI GRGCYC 3 cut(s) 33, 286, 780
Fsp4HI GCNGC 3 cut(s) 75, 318, 715
FspBI CTAG 5 cut(s) 339, 387, 468, 561, 567
GluI GCNGC 3 cut(s) 75, 318, 715
GsaI CCCAGC 1 cut(s) 43
GsuI CTGGAG 2 cut(s) 117, 203
HaeIII GGCC 2 cut(s) 430, 511
HapII CCGG 3 cut(s) 666, 732, 795
Hin1II CATG 4 cut(s) 334, 516, 610, 664
HincII GTYRAC 2 cut(s) 520, 532
HindII GTYRAC 2 cut(s) 520, 532
HinfI GANTC 2 cut(s) 124, 147
HpaII CCGG 3 cut(s) 666, 732, 795
HphI GGTGA 4 cut(s) 540, 620, 680, 815
Hpy166II GTNNAC 4 cut(s) 384, 465, 520, 532
Hpy188I TCNGA 2 cut(s) 703, 742
Hpy188III TCNNGA 5 cut(s) 134, 206, 271, 287, 795
Hpy8I GTNNAC 4 cut(s) 384, 465, 520, 532
Hpy99I CGWCG 1 cut(s) 755
HpyAV CCTTC 1 cut(s) 562
HpyCH4III ACNGT 1 cut(s) 755
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 3 cut(s) 19, 309, 525
HpyF10VI GCNNNNNNNGC 2 cut(s) 720, 744
HpyF3I CTNAG 2 cut(s) 779, 813
HpySE526I ACGT 1 cut(s) 276
Hsp92II CATG 4 cut(s) 334, 516, 610, 664
Kpn2I TCCGGA 1 cut(s) 794
Kzo9I GATC 9 cut(s) 136, 157, 210, 359, 407, 440, 488, 496, 625
LmnI GCTCC 3 cut(s) 28, 36, 797
Lsp1109I GCAGC 2 cut(s) 86, 304
MabI ACCWGGT 1 cut(s) 116
MaeI CTAG 5 cut(s) 339, 387, 468, 561, 567
MaeII ACGT 1 cut(s) 276
MaeIII GTNAC 1 cut(s) 803
MalI GATC 9 cut(s) 138, 159, 212, 361, 409, 442, 490, 498, 627
MboI GATC 9 cut(s) 136, 157, 210, 359, 407, 440, 488, 496, 625
MboII GAAGA 4 cut(s) 313, 605, 635, 638
MflI RGATCY 6 cut(s) 157, 210, 359, 407, 440, 488
MhlI GDGCHC 6 cut(s) 33, 188, 201, 286, 330, 780
MluCI AATT 4 cut(s) 373, 421, 454, 502
MroI TCCGGA 1 cut(s) 794
MroXI GAANNNNTTC 2 cut(s) 340, 645
MseI TTAA 2 cut(s) 180, 372
MspA1I CMGCKG 2 cut(s) 223, 434
MspI CCGG 3 cut(s) 666, 732, 795
MspR9I CCNGG 4 cut(s) 79, 118, 632, 666
MvaI CCWGG 3 cut(s) 79, 118, 632
MwoI GCNNNNNNNGC 2 cut(s) 720, 744
NciI CCSGG 1 cut(s) 666
NcoI CCATGG 3 cut(s) 330, 512, 606
NdeII GATC 9 cut(s) 136, 157, 210, 359, 407, 440, 488, 496, 625
NlaIII CATG 4 cut(s) 334, 516, 610, 664
NlaIV GGNNCC 8 cut(s) 6, 269, 361, 382, 409, 442, 463, 490
NmuCI GTSAC 1 cut(s) 803
PaeR7I CTCGAG 1 cut(s) 285
PdmI GAANNNNTTC 2 cut(s) 340, 645
PfeI GAWTC 2 cut(s) 124, 147
PflMI CCANNNNNTGG 1 cut(s) 437
PkrI GCNGC 3 cut(s) 76, 319, 716
PshBI ATTAAT 1 cut(s) 372
Psp124BI GAGCTC 2 cut(s) 33, 780
Psp6I CCWGG 3 cut(s) 77, 116, 630
PspFI CCCAGC 1 cut(s) 39
PspGI CCWGG 3 cut(s) 77, 116, 630
PspN4I GGNNCC 8 cut(s) 6, 269, 361, 382, 409, 442, 463, 490
PspPI GGNCC 4 cut(s) 381, 428, 462, 509
PstI CTGCAG 1 cut(s) 527
PsuI RGATCY 6 cut(s) 157, 210, 359, 407, 440, 488
PvuII CAGCTG 2 cut(s) 223, 434
RsaI GTAC 4 cut(s) 115, 352, 565, 571
RsaNI GTAC 4 cut(s) 114, 351, 564, 570
SacI GAGCTC 2 cut(s) 33, 780
SalI GTCGAC 1 cut(s) 518
SaqAI TTAA 2 cut(s) 180, 372
SatI GCNGC 3 cut(s) 75, 318, 715
Sau3AI GATC 9 cut(s) 136, 157, 210, 359, 407, 440, 488, 496, 625
Sau96I GGNCC 4 cut(s) 381, 428, 462, 509
ScaI AGTACT 2 cut(s) 565, 571
ScrFI CCNGG 4 cut(s) 79, 118, 632, 666
SduI GDGCHC 6 cut(s) 33, 188, 201, 286, 330, 780
SexAI ACCWGGT 1 cut(s) 116
SfcI CTRYAG 2 cut(s) 192, 523
Sfr274I CTCGAG 1 cut(s) 285
SinI GGWCC 2 cut(s) 381, 462
SlaI CTCGAG 1 cut(s) 285
SmlI CTYRAG 4 cut(s) 152, 285, 321, 773
SmoI CTYRAG 4 cut(s) 152, 285, 321, 773
SpeI ACTAGT 5 cut(s) 338, 386, 467, 560, 566
Sse9I AATT 4 cut(s) 373, 421, 454, 502
SsiI CCGC 1 cut(s) 714
SspMI CTAG 5 cut(s) 339, 387, 468, 561, 567
SstI GAGCTC 2 cut(s) 33, 780
StyD4I CCNGG 4 cut(s) 77, 116, 630, 664
StyI CCWWGG 4 cut(s) 330, 512, 606, 679
TaaI ACNGT 1 cut(s) 755
TaiI ACGT 1 cut(s) 279
TaqI TCGA 4 cut(s) 51, 286, 414, 519
TasI AATT 4 cut(s) 373, 421, 454, 502
TatI WGTACW 2 cut(s) 563, 569
TauI GCSGC 1 cut(s) 717
TfiI GAWTC 2 cut(s) 124, 147
Tru1I TTAA 2 cut(s) 180, 372
Tru9I TTAA 2 cut(s) 180, 372
TscAI CASTG 2 cut(s) 352, 532
TseFI GTSAC 1 cut(s) 803
TseI GCWGC 2 cut(s) 74, 317
Tsp45I GTSAC 1 cut(s) 803
TspDTI ATGAA 2 cut(s) 314, 606
TspGWI ACGGA 1 cut(s) 110
TspRI CASTG 2 cut(s) 352, 532
Van91I CCANNNNNTGG 1 cut(s) 437
VpaK11BI GGWCC 2 cut(s) 381, 462
VspI ATTAAT 1 cut(s) 372
XhoI CTCGAG 1 cut(s) 285
XmiI GTMKAC 1 cut(s) 519
XmnI GAANNNNTTC 2 cut(s) 340, 645
XspI CTAG 5 cut(s) 339, 387, 468, 561, 567
ZrmI AGTACT 2 cut(s) 565, 571
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.