Rmu_sc0021384.1_g000001

UPF0565 protein C2orf69 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0021384.1
OG0013327
Physical Location & Seq
Forward (+)
1 .. 3248
3248 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0021384.1_g000001.1.cds

Sequence Viewer

Length: 1037 bp
aatcccgattcttcgccggcttctggcgcgcacatttattcgtttgcttcgcaaaattgattttgttcatggaccgctggcgtggagttctaaaagtcccattacatcctcttgctgggacctgctaccgtgttgcagcatctctctgcctttcccctacttccgaaacactaattgttccttcagcaaatgccatcttttttggcggagatcgagttgcaggcactggtaatctagttgttgagaggttatcagacttgcagaatatagctgaaatactggtttcaaagattggtggttcagtcaatgcttgggttattgaagcttctgatttcaatgggcctttcgctgtgtacaaggactttataccatctgttaatcaatggggagagccaaaatcatactgccctgttggatatccagcttctggatcaattgtttcactcttatcaaatttccttgaagaggtgaagaatagcatagtgagacagaacaaactgtgctcacctggaaaatccgcatcacattttactcaacctgagacattaatttttggatttagcaagggtggcactgtacttaaccagatagttaccgagcttggcttctcagatattgaattatctggaggtgagctcgtggaggaaaaaaaaattagtatggaagaagagattcatatcatacctagaacaaaggaaacccttctgaacagcatcagagaaattcattatgtggatgttggactaaattcacctggtgcatatatcaccgaccatagtgcgattgagaaaatctccaaacgcctaacacaagtagatagaggaatccgttttatccttcatggaacacccaggcaatggcgtgacagcaggcgttcttggatatgcaatgaaaaagacaaattggttcatctgcttgaatctgaagctcaaagaagaggtggaaaattacaggtttgtgagaaattctattttcctgataggccacctgatttgcagatgcattttgaaataattgaaaaattggatgtcagttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0565

Protein Analysis

344

Amino Acids

38.53

Weight (kDa)

7.09

Isoelectric Point (pI)

43.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013327)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44850 AT2G44850 AT2G44850
fragaria_vesca FvH4_7g09990
malus_domestica MD07G1104800.v1.1
prunus_persica Prupe.2G132600_v2.0.a1 Prupe.2G132600_v2.0.a1
pyrus_communis pycom07g08990
rosa_chinensis RchiOBHm_Chr1g0347591
rosa_laevigata RLG00000028735
rosa_multiflora Rmu_sc0010621.1_g000015 Rmu_sc0021384.1_g000001
rosa_roxburghii Rroxscaffold_4G00307630
rosa_rugosa Rorug01G0188100
rosa_samantha Rh1CG190000 Rh1DG201000
rosa_wichuraiana Rw0G013660 Rw1G017230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 130
AccB7I CCANNNNNTGG 2 cut(s) 427, 857
AccII CGCG 1 cut(s) 29
AciI CCGC 3 cut(s) 75, 206, 518
AclWI GGATC 1 cut(s) 438
AcsI RAATTY 4 cut(s) 453, 722, 747, 964
AcuI CTGAAG 2 cut(s) 167, 944
AdeI CACNNNGTG 1 cut(s) 757
AfaI GTAC 2 cut(s) 355, 578
AfiI CCNNNNNNNGG 5 cut(s) 23, 115, 427, 465, 857
AgsI TTSAA 8 cut(s) 287, 322, 336, 463, 619, 919, 1009, 1018
AjnI CCWGG 3 cut(s) 507, 753, 850
AluBI AGCT 6 cut(s) 271, 325, 424, 600, 636, 928
AluI AGCT 6 cut(s) 271, 325, 424, 600, 636, 928
Alw21I GWGCWC 2 cut(s) 505, 638
Alw26I GTCTC 2 cut(s) 480, 535
AlwI GGATC 1 cut(s) 438
AlwNI CAGNNNCTG 2 cut(s) 226, 427
AoxI GGCC 2 cut(s) 340, 982
ApeKI GCWGC 1 cut(s) 136
ApoI RAATTY 4 cut(s) 453, 722, 747, 964
AseI ATTAAT 1 cut(s) 547
Asp700I GAANNNNTTC 2 cut(s) 671, 701
AspLEI GCGC 2 cut(s) 29, 31
AspS9I GGNCC 3 cut(s) 72, 119, 340
AsuHPI GGTGA 5 cut(s) 480, 497, 643, 743, 759
AvaII GGWCC 2 cut(s) 72, 119
BanII GRGCYC 1 cut(s) 638
BauI CACGAG 1 cut(s) 637
Bbv12I GWGCWC 2 cut(s) 505, 638
BbvI GCAGC 1 cut(s) 148
BccI CCATC 2 cut(s) 202, 378
BcgI CGANNNNNNTGC 2 cut(s) 760, 794
BciT130I CCWGG 3 cut(s) 509, 755, 852
BcoDI GTCTC 2 cut(s) 480, 535
BfaI CTAG 2 cut(s) 235, 686
BfuAI ACCTGC 1 cut(s) 130
BisI GCNGC 1 cut(s) 137
BlsI GCNGC 1 cut(s) 138
Bme1390I CCNGG 3 cut(s) 509, 755, 852
Bme18I GGWCC 2 cut(s) 72, 119
BmgT120I GGNCC 3 cut(s) 72, 119, 340
BmiI GGNNCC 1 cut(s) 120
BmrFI CCNGG 3 cut(s) 509, 755, 852
BmsI GCATC 4 cut(s) 148, 529, 722, 989
BplI GAGNNNNNCTC 4 cut(s) 620, 652, 778, 810
BpmI CTGGAG 1 cut(s) 647
BsaBI GATNNNNATC 1 cut(s) 676
BsaJI CCNNGG 1 cut(s) 850
BsaXI ACNNNNNCTCC 2 cut(s) 200, 230
Bsc4I CCNNNNNNNGG 5 cut(s) 23, 115, 427, 465, 857
Bse118I RCCGGY 1 cut(s) 16
Bse1I ACTGG 2 cut(s) 231, 284
Bse3DI GCAATG 2 cut(s) 862, 894
Bse8I GATNNNNATC 1 cut(s) 676
BseBI CCWGG 3 cut(s) 509, 755, 852
BseDI CCNNGG 1 cut(s) 850
BseGI GGATG 3 cut(s) 105, 741, 1032
BseJI GATNNNNATC 1 cut(s) 676
BseLI CCNNNNNNNGG 5 cut(s) 23, 115, 427, 465, 857
BseMI GCAATG 2 cut(s) 862, 894
BseMII CTCAG 2 cut(s) 530, 623
BseNI ACTGG 2 cut(s) 231, 284
BsePI GCGCGC 1 cut(s) 27
BseXI GCAGC 1 cut(s) 148
BseYI CCCAGC 1 cut(s) 115
Bsh1236I CGCG 1 cut(s) 29
BshFI GGCC 2 cut(s) 342, 984
BsiHKAI GWGCWC 2 cut(s) 505, 638
BsiSI CCGG 1 cut(s) 17
BslFI GGGAC 2 cut(s) 82, 132
BslI CCNNNNNNNGG 5 cut(s) 23, 115, 427, 465, 857
BsmAI GTCTC 2 cut(s) 480, 535
BsmFI GGGAC 2 cut(s) 82, 132
BsnI GGCC 2 cut(s) 342, 984
Bsp1286I GDGCHC 2 cut(s) 505, 638
Bsp1407I TGTACA 1 cut(s) 353
Bsp143I GATC 2 cut(s) 210, 430
BspACI CCGC 3 cut(s) 75, 206, 518
BspANI GGCC 2 cut(s) 342, 984
BspCNI CTCAG 2 cut(s) 531, 622
BspFNI CGCG 1 cut(s) 29
BspLI GGNNCC 1 cut(s) 120
BspMI ACCTGC 1 cut(s) 130
BspPI GGATC 1 cut(s) 438
BsrDI GCAATG 2 cut(s) 862, 894
BsrFI RCCGGY 1 cut(s) 16
BsrGI TGTACA 1 cut(s) 353
BsrI ACTGG 2 cut(s) 231, 284
BssAI RCCGGY 1 cut(s) 16
BssECI CCNNGG 1 cut(s) 850
BssHII GCGCGC 1 cut(s) 27
BssMI GATC 2 cut(s) 210, 430
BssSI CACGAG 1 cut(s) 637
Bst2BI CACGAG 1 cut(s) 637
Bst2UI CCWGG 3 cut(s) 509, 755, 852
Bst4CI ACNGT 3 cut(s) 130, 500, 576
Bst6I CTCTTC 3 cut(s) 458, 662, 930
BstAUI TGTACA 1 cut(s) 353
BstC8I GCNNGC 5 cut(s) 18, 29, 79, 222, 871
BstDEI CTNAG 2 cut(s) 539, 609
BstENI CCTNNNNNAGG 1 cut(s) 463
BstF5I GGATG 3 cut(s) 105, 741, 1032
BstFNI CGCG 1 cut(s) 29
BstHHI GCGC 2 cut(s) 29, 31
BstKTI GATC 2 cut(s) 213, 433
BstMAI GTCTC 2 cut(s) 480, 535
BstMBI GATC 2 cut(s) 210, 430
BstMWI GCNNNNNNNGC 2 cut(s) 26, 569
BstNI CCWGG 3 cut(s) 509, 755, 852
BstSCI CCNGG 3 cut(s) 507, 753, 850
BstUI CGCG 1 cut(s) 29
BstV1I GCAGC 1 cut(s) 148
BsuRI GGCC 2 cut(s) 342, 984
BtsCI GGATG 3 cut(s) 105, 741, 1032
BtsIMutI CAGTG 2 cut(s) 224, 572
BveI ACCTGC 1 cut(s) 130
Cac8I GCNNGC 5 cut(s) 18, 29, 79, 222, 871
CaiI CAGNNNCTG 2 cut(s) 226, 427
CfoI GCGC 2 cut(s) 29, 31
Cfr10I RCCGGY 1 cut(s) 16
Cfr13I GGNCC 3 cut(s) 72, 119, 340
CsiI ACCWGGT 1 cut(s) 753
Csp6I GTAC 2 cut(s) 354, 577
CspCI CAANNNNNGTGG 2 cut(s) 974, 1009
CviAII CATG 2 cut(s) 69, 841
CviQI GTAC 2 cut(s) 354, 577
DdeI CTNAG 2 cut(s) 539, 609
DpnI GATC 2 cut(s) 212, 432
DpnII GATC 2 cut(s) 210, 430
DraIII CACNNNGTG 1 cut(s) 757
Eam1104I CTCTTC 3 cut(s) 458, 662, 930
EarI CTCTTC 3 cut(s) 458, 662, 930
EciI GGCGGA 1 cut(s) 221
Ecl136II GAGCTC 1 cut(s) 636
Eco24I GRGCYC 1 cut(s) 638
Eco32I GATATC 1 cut(s) 418
Eco47I GGWCC 2 cut(s) 72, 119
Eco53kI GAGCTC 1 cut(s) 636
Eco57I CTGAAG 2 cut(s) 167, 944
EcoICRI GAGCTC 1 cut(s) 636
EcoNI CCTNNNNNAGG 1 cut(s) 463
EcoO109I RGGNCCY 1 cut(s) 119
EcoRII CCWGG 3 cut(s) 507, 753, 850
EcoRV GATATC 1 cut(s) 418
EcoT22I ATGCAT 1 cut(s) 1004
EcoT38I GRGCYC 1 cut(s) 638
FaeI CATG 2 cut(s) 72, 844
FaqI GGGAC 2 cut(s) 82, 132
FatI CATG 2 cut(s) 68, 840
Fnu4HI GCNGC 1 cut(s) 137
FokI GGATG 2 cut(s) 92, 748
FriOI GRGCYC 1 cut(s) 638
Fsp4HI GCNGC 1 cut(s) 137
FspBI CTAG 2 cut(s) 235, 686
GlaI GCGC 2 cut(s) 28, 30
GluI GCNGC 1 cut(s) 137
GsaI CCCAGC 1 cut(s) 119
GsuI CTGGAG 1 cut(s) 647
HaeIII GGCC 2 cut(s) 342, 984
HapII CCGG 1 cut(s) 17
HhaI GCGC 2 cut(s) 29, 31
Hin1II CATG 2 cut(s) 72, 844
Hin6I GCGC 2 cut(s) 27, 29
HinP1I GCGC 2 cut(s) 27, 29
HindIII AAGCTT 1 cut(s) 323
HinfI GANTC 4 cut(s) 8, 672, 824, 919
HpaII CCGG 1 cut(s) 17
HphI GGTGA 5 cut(s) 480, 497, 643, 743, 759
Hpy166II GTNNAC 1 cut(s) 354
Hpy188I TCNGA 7 cut(s) 165, 255, 330, 612, 707, 718, 924
Hpy188III TCNNGA 4 cut(s) 5, 428, 626, 976
Hpy8I GTNNAC 1 cut(s) 354
HpyAV CCTTC 3 cut(s) 191, 712, 847
HpyCH4III ACNGT 3 cut(s) 130, 500, 576
HpyCH4V TGCA 7 cut(s) 136, 220, 261, 760, 887, 996, 1002
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 569
HpyF3I CTNAG 2 cut(s) 539, 609
Hsp92II CATG 2 cut(s) 72, 844
HspAI GCGC 2 cut(s) 27, 29
KroI GCCGGC 1 cut(s) 16
KroNI GCCGGC 1 cut(s) 18
Kzo9I GATC 2 cut(s) 210, 430
Lsp1109I GCAGC 1 cut(s) 148
LweI GCATC 4 cut(s) 148, 529, 722, 989
MabI ACCWGGT 1 cut(s) 753
MaeI CTAG 2 cut(s) 235, 686
MaeIII GTNAC 2 cut(s) 591, 862
MalI GATC 2 cut(s) 212, 432
MboI GATC 2 cut(s) 210, 430
MboII GAAGA 6 cut(s) 3, 475, 483, 676, 679, 947
MfeI CAATTG 1 cut(s) 434
MhlI GDGCHC 2 cut(s) 505, 638
MmeI TCCRAC 2 cut(s) 393, 720
MnlI CCTC 7 cut(s) 119, 239, 459, 622, 636, 814, 931
Mph1103I ATGCAT 1 cut(s) 1004
MroNI GCCGGC 1 cut(s) 16
MroXI GAANNNNTTC 2 cut(s) 671, 701
MseI TTAA 3 cut(s) 377, 547, 581
MspA1I CMGCKG 1 cut(s) 77
MspI CCGG 1 cut(s) 17
MspR9I CCNGG 3 cut(s) 509, 755, 852
MunI CAATTG 1 cut(s) 434
MvaI CCWGG 3 cut(s) 509, 755, 852
MvnI CGCG 1 cut(s) 29
MwoI GCNNNNNNNGC 2 cut(s) 26, 569
NaeI GCCGGC 1 cut(s) 18
NdeII GATC 2 cut(s) 210, 430
NgoMIV GCCGGC 1 cut(s) 16
NlaIII CATG 2 cut(s) 72, 844
NlaIV GGNNCC 1 cut(s) 120
NmuCI GTSAC 1 cut(s) 862
NsiI ATGCAT 1 cut(s) 1004
PauI GCGCGC 1 cut(s) 27
PdiI GCCGGC 1 cut(s) 18
PdmI GAANNNNTTC 2 cut(s) 671, 701
PfeI GAWTC 4 cut(s) 8, 672, 824, 919
PflMI CCANNNNNTGG 2 cut(s) 427, 857
PkrI GCNGC 1 cut(s) 138
PpuMI RGGWCCY 1 cut(s) 119
PshBI ATTAAT 1 cut(s) 547
Psp124BI GAGCTC 1 cut(s) 638
Psp5II RGGWCCY 1 cut(s) 119
Psp6I CCWGG 3 cut(s) 507, 753, 850
PspFI CCCAGC 1 cut(s) 115
PspGI CCWGG 3 cut(s) 507, 753, 850
PspN4I GGNNCC 1 cut(s) 120
PspPI GGNCC 3 cut(s) 72, 119, 340
PspPPI RGGWCCY 1 cut(s) 119
PstNI CAGNNNCTG 2 cut(s) 226, 427
PteI GCGCGC 1 cut(s) 27
RsaI GTAC 2 cut(s) 355, 578
RsaNI GTAC 2 cut(s) 354, 577
SacI GAGCTC 1 cut(s) 638
SaqAI TTAA 3 cut(s) 377, 547, 581
SatI GCNGC 1 cut(s) 137
Sau3AI GATC 2 cut(s) 210, 430
Sau96I GGNCC 3 cut(s) 72, 119, 340
ScrFI CCNGG 3 cut(s) 509, 755, 852
SduI GDGCHC 2 cut(s) 505, 638
SexAI ACCWGGT 1 cut(s) 753
SfaNI GCATC 4 cut(s) 148, 529, 722, 989
SinI GGWCC 2 cut(s) 72, 119
SsiI CCGC 3 cut(s) 75, 206, 518
SspMI CTAG 2 cut(s) 235, 686
SstI GAGCTC 1 cut(s) 638
StyD4I CCNGG 3 cut(s) 507, 753, 850
TaaI ACNGT 3 cut(s) 130, 500, 576
TaqI TCGA 1 cut(s) 213
TatI WGTACW 2 cut(s) 353, 576
TfiI GAWTC 4 cut(s) 8, 672, 824, 919
Tru1I TTAA 3 cut(s) 377, 547, 581
Tru9I TTAA 3 cut(s) 377, 547, 581
TscAI CASTG 2 cut(s) 231, 579
TseFI GTSAC 1 cut(s) 862
TseI GCWGC 1 cut(s) 136
Tsp45I GTSAC 1 cut(s) 862
TspDTI ATGAA 6 cut(s) 57, 664, 715, 829, 898, 905
TspGWI ACGGA 1 cut(s) 817
TspRI CASTG 2 cut(s) 231, 579
Van91I CCANNNNNTGG 2 cut(s) 427, 857
VpaK11BI GGWCC 2 cut(s) 72, 119
VspI ATTAAT 1 cut(s) 547
XagI CCTNNNNNAGG 1 cut(s) 463
XapI RAATTY 4 cut(s) 453, 722, 747, 964
XmnI GAANNNNTTC 2 cut(s) 671, 701
XspI CTAG 2 cut(s) 235, 686
Zsp2I ATGCAT 1 cut(s) 1004
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.