Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009546

Physical Location & Seq

Genomic Coordinates Reverse (-)

18500803 .. 18502562

Gene Structure 1760 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G44860.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGAGATTGGAGAAGTGTTGGTTTTGCTCTTCCACAATATATCCTGGTCATGGTATTCAATTTGTCCGTAACGATGCCAAGATATTCCGGTTCTGTAGGTCGAAGTGTCACAAGAACTTCAAGATGAAGAGAAACCCACGTAAAGTGAAATGGACTAAAGCATTCAGAGCTGCACACGGGAAGGACATGACTAAGGATACAACATTTGAGTTTGAGAAGAAGAGAAACAGACCTGAGAGATACGACAGGAACGTTACAGAGAATACACTCATGGCCATTAAGAAGATTGCTAAGATCAGAACCGCAAGGGAAGCCAAACATATCGAAAATAGGTTGAAGCCAAACAAGCAGAAGAAACTCAATGACGATATGAAAGAACTTGATCAGAACATTCATATGGTCCAGGCTCCCGGGGCACAGAAGATCAAAGTTGATGTTTCCGAAAAGAAGTCTGTTCAAAACGAAGCCATGGAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902626 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L24e

Protein Analysis

159

Amino Acids

18.94

Weight (kDa)

10.07

Isoelectric Point (pI)

34.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L24e	PF01246	1 - 65	1.6e-33	Ribosomal protein L24e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009546)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44860 AT2G44860
fragaria_vesca	FvH4_3g24270
malus_domestica	MD03G1135200.v1.1 MD11G1157900.v1.1
prunus_persica	Prupe.5G055500_v2.0.a1 Prupe.5G055500_v2.0.a1 Prupe.5G055500_v2.0.a1 Prupe.6G119600_v2.0.a1
pyrus_communis	pycom03g09110 pycom11g12820
rosa_chinensis	RchiOBHm_Chr5g0043411
rosa_laevigata	RLG00000034185
rosa_multiflora	Rmu_sc0000060.1_g000067
rosa_roxburghii	Rroxscaffold_1G00037470
rosa_rugosa	Rorug05G0205700 Rorug05G0205700
rosa_samantha	Rh5AG291500 Rh5BG298100 Rh5CG327600 Rh5DG307500
rosa_wichuraiana	Rw5G027040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	303
AclI	AACGTT	1 cut(s)	252
AcoI	YGGCCR	1 cut(s)	273
AfiI	CCNNNNNNNGG	1 cut(s)	50
AgsI	TTSAA	4 cut(s)	59, 121, 337, 458
AjnI	CCWGG	2 cut(s)	43, 402
AluBI	AGCT	1 cut(s)	170
AluI	AGCT	1 cut(s)	170
Ama87I	CYCGRG	1 cut(s)	410
AoxI	GGCC	1 cut(s)	273
ApeKI	GCWGC	1 cut(s)	170
AspS9I	GGNCC	1 cut(s)	400
AsuC2I	CCSGG	2 cut(s)	411, 412
AvaI	CYCGRG	1 cut(s)	410
AvaII	GGWCC	1 cut(s)	400
BaeGI	GKGCMC	1 cut(s)	418
BalI	TGGCCA	1 cut(s)	275
BbvI	GCAGC	1 cut(s)	157
BciT130I	CCWGG	2 cut(s)	45, 404
BciVI	GTATCC	1 cut(s)	190
BclI	TGATCA	1 cut(s)	382
BcnI	CCSGG	2 cut(s)	411, 412
BfmI	CTRYAG	1 cut(s)	94
BfuI	GTATCC	1 cut(s)	190
BisI	GCNGC	1 cut(s)	171
BlsI	GCNGC	1 cut(s)	172
Bme1390I	CCNGG	4 cut(s)	45, 404, 411, 412
Bme18I	GGWCC	1 cut(s)	400
BmeT110I	CYCGRG	1 cut(s)	410
BmgT120I	GGNCC	1 cut(s)	400
BmiI	GGNNCC	1 cut(s)	408
BmrFI	CCNGG	4 cut(s)	45, 404, 411, 412
BmsI	GCATC	1 cut(s)	64
BpuMI	CCSGG	2 cut(s)	411, 412
BsaAI	YACGTR	1 cut(s)	140
BsaJI	CCNNGG	3 cut(s)	410, 411, 468
BsaWI	WCCGGW	1 cut(s)	87
Bsc4I	CCNNNNNNNGG	1 cut(s)	50
BseBI	CCWGG	2 cut(s)	45, 404
BseDI	CCNNGG	3 cut(s)	410, 411, 468
BseLI	CCNNNNNNNGG	1 cut(s)	50
BseMII	CTCAG	1 cut(s)	225
BseSI	GKGCMC	1 cut(s)	418
BseXI	GCAGC	1 cut(s)	157
BsgI	GTGCAG	1 cut(s)	156
BshFI	GGCC	1 cut(s)	275
BsiHKCI	CYCGRG	1 cut(s)	410
BsiSI	CCGG	2 cut(s)	88, 411
BslI	CCNNNNNNNGG	1 cut(s)	50
BsmI	GAATGC	1 cut(s)	161
BsnI	GGCC	1 cut(s)	275
BsoBI	CYCGRG	1 cut(s)	410
Bsp1286I	GDGCHC	1 cut(s)	418
Bsp143I	GATC	3 cut(s)	294, 382, 423
Bsp19I	CCATGG	1 cut(s)	468
BspACI	CCGC	1 cut(s)	303
BspANI	GGCC	1 cut(s)	275
BspCNI	CTCAG	1 cut(s)	226
BspLI	GGNNCC	1 cut(s)	408
BspQI	GCTCTTC	1 cut(s)	34
BssECI	CCNNGG	3 cut(s)	410, 411, 468
BssMI	GATC	3 cut(s)	294, 382, 423
BssT1I	CCWWGG	1 cut(s)	468
Bst2UI	CCWGG	2 cut(s)	45, 404
Bst6I	CTCTTC	4 cut(s)	34, 122, 215, 468
BstBAI	YACGTR	1 cut(s)	140
BstDEI	CTNAG	3 cut(s)	192, 234, 291
BstDSI	CCRYGG	1 cut(s)	468
BstKTI	GATC	3 cut(s)	297, 385, 426
BstMBI	GATC	3 cut(s)	294, 382, 423
BstMWI	GCNNNNNNNGC	4 cut(s)	167, 311, 346, 413
BstNI	CCWGG	2 cut(s)	45, 404
BstSCI	CCNGG	4 cut(s)	43, 402, 409, 410
BstSFI	CTRYAG	1 cut(s)	94
BstSLI	GKGCMC	1 cut(s)	418
BstV1I	GCAGC	1 cut(s)	157
BsuI	GTATCC	1 cut(s)	190
BsuRI	GGCC	1 cut(s)	275
BtgI	CCRYGG	1 cut(s)	468
Cfr13I	GGNCC	1 cut(s)	400
Cfr9I	CCCGGG	1 cut(s)	410
CviAII	CATG	4 cut(s)	50, 187, 271, 469
CviJI	RGCY	6 cut(s)	170, 275, 314, 340, 407, 467
CviKI_1	RGCY	6 cut(s)	170, 275, 314, 340, 407, 467
DdeI	CTNAG	3 cut(s)	192, 234, 291
DpnI	GATC	3 cut(s)	296, 384, 425
DpnII	GATC	3 cut(s)	294, 382, 423
EaeI	YGGCCR	1 cut(s)	273
Eam1104I	CTCTTC	4 cut(s)	34, 122, 215, 468
EarI	CTCTTC	4 cut(s)	34, 122, 215, 468
Eco130I	CCWWGG	1 cut(s)	468
Eco47I	GGWCC	1 cut(s)	400
Eco88I	CYCGRG	1 cut(s)	410
EcoRII	CCWGG	2 cut(s)	43, 402
EcoT14I	CCWWGG	1 cut(s)	468
ErhI	CCWWGG	1 cut(s)	468
FaeI	CATG	4 cut(s)	53, 190, 274, 472
FaiI	YATR	9 cut(s)	40, 51, 188, 272, 321, 371, 396, 398, 470
FatI	CATG	4 cut(s)	49, 186, 270, 468
FauNDI	CATATG	1 cut(s)	396
FbaI	TGATCA	1 cut(s)	382
Fnu4HI	GCNGC	1 cut(s)	171
Fsp4HI	GCNGC	1 cut(s)	171
GluI	GCNGC	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	275
HapII	CCGG	2 cut(s)	88, 411
Hin1II	CATG	4 cut(s)	53, 190, 274, 472
HpaII	CCGG	2 cut(s)	88, 411
Hpy188I	TCNGA	4 cut(s)	167, 299, 387, 442
Hpy188III	TCNNGA	1 cut(s)	121
HpyAV	CCTTC	1 cut(s)	175
HpyCH4IV	ACGT	2 cut(s)	139, 252
HpyCH4V	TGCA	1 cut(s)	173
HpyF10VI	GCNNNNNNNGC	4 cut(s)	167, 311, 346, 413
HpyF3I	CTNAG	3 cut(s)	192, 234, 291
HpySE526I	ACGT	2 cut(s)	139, 252
Hsp92II	CATG	4 cut(s)	53, 190, 274, 472
Ksp22I	TGATCA	1 cut(s)	382
Kzo9I	GATC	3 cut(s)	294, 382, 423
LguI	GCTCTTC	1 cut(s)	34
LmnI	GCTCC	1 cut(s)	412
LpnPI	CCDG	8 cut(s)	30, 57, 101, 232, 246, 389, 416, 424
Lsp1109I	GCAGC	1 cut(s)	157
LweI	GCATC	1 cut(s)	64
MaeII	ACGT	2 cut(s)	139, 252
MaeIII	GTNAC	3 cut(s)	68, 107, 253
MalI	GATC	3 cut(s)	296, 384, 425
MboI	GATC	3 cut(s)	294, 382, 423
MboII	GAAGA	7 cut(s)	21, 139, 229, 232, 295, 364, 433
MhlI	GDGCHC	1 cut(s)	418
MlsI	TGGCCA	1 cut(s)	275
MluCI	AATT	1 cut(s)	59
MluNI	TGGCCA	1 cut(s)	275
Mox20I	TGGCCA	1 cut(s)	275
MscI	TGGCCA	1 cut(s)	275
MseI	TTAA	1 cut(s)	279
MslI	CAYNNNNRTG	1 cut(s)	395
Msp20I	TGGCCA	1 cut(s)	275
MspI	CCGG	2 cut(s)	88, 411
MspR9I	CCNGG	4 cut(s)	45, 404, 411, 412
Mva1269I	GAATGC	1 cut(s)	161
MvaI	CCWGG	2 cut(s)	45, 404
MwoI	GCNNNNNNNGC	4 cut(s)	167, 311, 346, 413
NciI	CCSGG	2 cut(s)	411, 412
NcoI	CCATGG	1 cut(s)	468
NdeI	CATATG	1 cut(s)	396
NdeII	GATC	3 cut(s)	294, 382, 423
NlaIII	CATG	4 cut(s)	53, 190, 274, 472
NlaIV	GGNNCC	1 cut(s)	408
NmuCI	GTSAC	1 cut(s)	107
PciSI	GCTCTTC	1 cut(s)	34
PcsI	WCGNNNNNNNCGW	1 cut(s)	249
PctI	GAATGC	1 cut(s)	161
PkrI	GCNGC	1 cut(s)	172
Ppu21I	YACGTR	1 cut(s)	140
Psp1406I	AACGTT	1 cut(s)	252
Psp6I	CCWGG	2 cut(s)	43, 402
PspGI	CCWGG	2 cut(s)	43, 402
PspN4I	GGNNCC	1 cut(s)	408
PspPI	GGNCC	1 cut(s)	400
RseI	CAYNNNNRTG	1 cut(s)	395
SapI	GCTCTTC	1 cut(s)	34
SaqAI	TTAA	1 cut(s)	279
SatI	GCNGC	1 cut(s)	171
Sau3AI	GATC	3 cut(s)	294, 382, 423
Sau96I	GGNCC	1 cut(s)	400
ScrFI	CCNGG	4 cut(s)	45, 404, 411, 412
SduI	GDGCHC	1 cut(s)	418
SetI	ASST	6 cut(s)	101, 142, 172, 235, 255, 335
SfaNI	GCATC	1 cut(s)	64
SfcI	CTRYAG	1 cut(s)	94
SinI	GGWCC	1 cut(s)	400
SmaI	CCCGGG	1 cut(s)	412
SmiMI	CAYNNNNRTG	1 cut(s)	395
Sse9I	AATT	1 cut(s)	59
SsiI	CCGC	1 cut(s)	303
StyD4I	CCNGG	4 cut(s)	43, 402, 409, 410
StyI	CCWWGG	1 cut(s)	468
TaiI	ACGT	2 cut(s)	142, 255
TaqI	TCGA	2 cut(s)	101, 324
TasI	AATT	1 cut(s)	59
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TseFI	GTSAC	1 cut(s)	107
TseI	GCWGC	1 cut(s)	170
Tsp45I	GTSAC	1 cut(s)	107
TspDTI	ATGAA	3 cut(s)	140, 383, 386
TspGWI	ACGGA	1 cut(s)	56
TspMI	CCCGGG	1 cut(s)	410
VpaK11BI	GGWCC	1 cut(s)	400
XmaI	CCCGGG	1 cut(s)	410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.