Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007879

Physical Location & Seq

Genomic Coordinates Reverse (-)

20558166 .. 20559420

Gene Structure 1255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0205700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGCTAAAGCAACTCTCACTCTTTTGCTCCTGCTCTTGTCCTTCGCTTCAGAAATATTGGTAATGGTAAATGGGCAGCAGAAAACTTGGTGTGTGGCCAAACCTTCAACAGACCAAGCAACGCTTTTAGCGAATCTGAATTTCGCATGCTCTCATGTAGATTGTCGGATTCTTCAAGGTGGATGTCCATGCTCCTCTCCGGATAATCTCATGAATCATGCCTCTATAGCCATGAATCTATACTACCAAGCTAAGGGAAGGAACCAGTGGAATTGTGATTTTAGGTGCTCTGCTCTTATTGTCATGACTAATCCAAGTTATGGCGACTGCATCTATGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005345 GO:0005350 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006855 GO:0006863 GO:0008150 GO:0008324 GO:0015075 GO:0015205 GO:0015207 GO:0015208 GO:0015210 GO:0015238 GO:0015291 GO:0015293 GO:0015294 GO:0015318 GO:0015851 GO:0015853 GO:0015854 GO:0015855 GO:0015857 GO:0015893 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034220 GO:0035344 GO:0042221 GO:0042493 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072530 GO:0072531 GO:0098655 GO:0098657 GO:0098702 GO:0098710 GO:0098721 GO:0098739 GO:1903716 GO:1903791 GO:1904082 GO:1904823

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Xan_ur_permease

Protein Analysis

113

Amino Acids

12.4

Weight (kDa)

7.53

Isoelectric Point (pI)

31.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
X8	PF07983	29 - 98	3.6e-18	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27810 AT2G27810 AT2G27810 AT2G27810
fragaria_vesca	FvH4_3g24260
malus_domestica	MD03G1135100.v1.1 MD11G1157800.v1.1
prunus_persica	Prupe.6G119500_v2.0.a1 Prupe.6G119500_v2.0.a1 Prupe.6G119500_v2.0.a1
pyrus_communis	pycom03g09100 pycom11g12810
rosa_chinensis	RchiOBHm_Chr5g0043401
rosa_laevigata	RLG00000034184
rosa_multiflora	Rmu_sc0000060.1_g000066 Rmu_sc0007797.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037480
rosa_rugosa	Rorug05G0205700
rosa_samantha	Rh5AG291400 Rh5BG298000 Rh5CG327500 Rh5DG307400
rosa_wichuraiana	Rw0G010300 Rw5G027030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	320
AccIII	TCCGGA	1 cut(s)	199
AcoI	YGGCCR	1 cut(s)	96
AcsI	RAATTY	1 cut(s)	139
AcuI	CTGAAG	1 cut(s)	33
AfiI	CCNNNNNNNGG	2 cut(s)	253, 320
AgsI	TTSAA	2 cut(s)	108, 176
AluBI	AGCT	1 cut(s)	251
AluI	AGCT	1 cut(s)	251
Alw21I	GWGCWC	1 cut(s)	290
Aor13HI	TCCGGA	1 cut(s)	199
AoxI	GGCC	1 cut(s)	96
ApeKI	GCWGC	1 cut(s)	76
ApoI	RAATTY	1 cut(s)	139
BalI	TGGCCA	1 cut(s)	98
Bbv12I	GWGCWC	1 cut(s)	290
BbvI	GCAGC	1 cut(s)	88
BfmI	CTRYAG	1 cut(s)	225
BisI	GCNGC	1 cut(s)	77
BlsI	GCNGC	1 cut(s)	78
BmiI	GGNNCC	1 cut(s)	263
Bpu10I	CCTNAGC	1 cut(s)	252
BsaWI	WCCGGW	1 cut(s)	199
Bsc4I	CCNNNNNNNGG	2 cut(s)	253, 320
Bse1I	ACTGG	1 cut(s)	265
BseAI	TCCGGA	1 cut(s)	199
BseGI	GGATG	1 cut(s)	188
BseLI	CCNNNNNNNGG	2 cut(s)	253, 320
BseNI	ACTGG	1 cut(s)	265
BseRI	GAGGAG	1 cut(s)	184
BseXI	GCAGC	1 cut(s)	88
BshFI	GGCC	1 cut(s)	98
BsiHKAI	GWGCWC	1 cut(s)	290
BsiSI	CCGG	1 cut(s)	200
BslI	CCNNNNNNNGG	2 cut(s)	253, 320
BsnI	GGCC	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	290
Bsp13I	TCCGGA	1 cut(s)	199
BspANI	GGCC	1 cut(s)	98
BspEI	TCCGGA	1 cut(s)	199
BspHI	TCATGA	2 cut(s)	210, 303
BspLI	GGNNCC	1 cut(s)	263
BsrI	ACTGG	1 cut(s)	265
BstC8I	GCNNGC	1 cut(s)	148
BstDEI	CTNAG	1 cut(s)	252
BstF5I	GGATG	1 cut(s)	188
BstMWI	GCNNNNNNNGC	1 cut(s)	227
BstNSI	RCATGY	1 cut(s)	150
BstSFI	CTRYAG	1 cut(s)	225
BstV1I	GCAGC	1 cut(s)	88
BsuRI	GGCC	1 cut(s)	98
BtsCI	GGATG	1 cut(s)	188
BtsIMutI	CAGTG	1 cut(s)	272
Cac8I	GCNNGC	1 cut(s)	148
CciI	TCATGA	2 cut(s)	210, 303
CviAII	CATG	7 cut(s)	147, 155, 189, 211, 218, 232, 304
CviJI	RGCY	4 cut(s)	5, 98, 230, 251
CviKI_1	RGCY	4 cut(s)	5, 98, 230, 251
DdeI	CTNAG	1 cut(s)	252
EaeI	YGGCCR	1 cut(s)	96
Eco57I	CTGAAG	1 cut(s)	33
EcoT22I	ATGCAT	1 cut(s)	340
FaeI	CATG	7 cut(s)	150, 158, 192, 214, 221, 235, 307
FalI	AAGNNNNNCTT	2 cut(s)	108, 140
FatI	CATG	7 cut(s)	146, 154, 188, 210, 217, 231, 303
Fnu4HI	GCNGC	1 cut(s)	77
FokI	GGATG	1 cut(s)	195
Fsp4HI	GCNGC	1 cut(s)	77
GluI	GCNGC	1 cut(s)	77
HaeIII	GGCC	1 cut(s)	98
HapII	CCGG	1 cut(s)	200
Hin1II	CATG	7 cut(s)	150, 158, 192, 214, 221, 235, 307
HinfI	GANTC	4 cut(s)	133, 169, 214, 235
HpaII	CCGG	1 cut(s)	200
Hpy188I	TCNGA	3 cut(s)	52, 138, 168
Hpy188III	TCNNGA	3 cut(s)	200, 211, 304
HpyAV	CCTTC	3 cut(s)	52, 114, 252
HpyCH4V	TGCA	2 cut(s)	330, 338
HpyF10VI	GCNNNNNNNGC	1 cut(s)	227
HpyF3I	CTNAG	1 cut(s)	252
Hsp92II	CATG	7 cut(s)	150, 158, 192, 214, 221, 235, 307
Kpn2I	TCCGGA	1 cut(s)	199
LmnI	GCTCC	2 cut(s)	33, 197
LpnPI	CCDG	3 cut(s)	44, 213, 278
Lsp1109I	GCAGC	1 cut(s)	88
MboII	GAAGA	1 cut(s)	164
MhlI	GDGCHC	1 cut(s)	290
MlsI	TGGCCA	1 cut(s)	98
MluCI	AATT	2 cut(s)	139, 271
MluNI	TGGCCA	1 cut(s)	98
MmeI	TCCRAC	1 cut(s)	146
MnlI	CCTC	2 cut(s)	205, 232
Mox20I	TGGCCA	1 cut(s)	98
Mph1103I	ATGCAT	1 cut(s)	340
MroI	TCCGGA	1 cut(s)	199
MscI	TGGCCA	1 cut(s)	98
Msp20I	TGGCCA	1 cut(s)	98
MspI	CCGG	1 cut(s)	200
MwoI	GCNNNNNNNGC	1 cut(s)	227
NlaIII	CATG	7 cut(s)	150, 158, 192, 214, 221, 235, 307
NlaIV	GGNNCC	1 cut(s)	263
NsiI	ATGCAT	1 cut(s)	340
NspI	RCATGY	1 cut(s)	150
PaeI	GCATGC	1 cut(s)	150
PagI	TCATGA	2 cut(s)	210, 303
PcsI	WCGNNNNNNNCGW	1 cut(s)	128
PfeI	GAWTC	4 cut(s)	133, 169, 214, 235
PflMI	CCANNNNNTGG	1 cut(s)	320
PkrI	GCNGC	1 cut(s)	78
PspN4I	GGNNCC	1 cut(s)	263
SatI	GCNGC	1 cut(s)	77
SduI	GDGCHC	1 cut(s)	290
SetI	ASST	4 cut(s)	106, 181, 253, 287
SfcI	CTRYAG	1 cut(s)	225
SphI	GCATGC	1 cut(s)	150
Sse9I	AATT	2 cut(s)	139, 271
SspI	AATATT	1 cut(s)	57
TasI	AATT	2 cut(s)	139, 271
TfiI	GAWTC	4 cut(s)	133, 169, 214, 235
TscAI	CASTG	1 cut(s)	272
TseI	GCWGC	1 cut(s)	76
TspDTI	ATGAA	2 cut(s)	227, 248
TspRI	CASTG	1 cut(s)	272
Van91I	CCANNNNNTGG	1 cut(s)	320
XapI	RAATTY	1 cut(s)	139
XceI	RCATGY	1 cut(s)	150
Zsp2I	ATGCAT	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.