Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00431

Orthogroup ID

OG0007879

Physical Location & Seq

Genomic Coordinates Forward (+)

26137 .. 29230

Gene Structure 3094 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G010300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGCTATTGTTATGTGTGTGGTTTCAATTATCTCATCAGTGGATTCGGTTGGCTCATATCATGCTTCTTCACTATTGGTGGCATCCAGGCCTCCAACTCCTGGTGTTGTTAGTCGAGGGATAGGTCTTGAAGGTCTTTCCAGCATCTTGGCAGGTTTATGGGGTACTGGAACAGGGTCCACAAGTTTAACTGAAAATGTGCACACAATAGCTGTCACTAAGATGGGAAGCCGTAGAGCAGTTGAATTGGGTGCATGCCTCTTGATTGTCTTATCCCTTGTTGGTAAAGTTGGAGGGTTTCTTGCATCAATTCCCCAAGTCATGGTTGCAGCACTTCTGTGCTTCATGTGGGCGATGCTTGCTGCATTGGGTCTGTCAAATCTACGTTATAGCGAGGCTGGAAGCTCTCGGAATATTATCATTGTCGGGCTATCTTTGTTTTTCTCGCTGTCAATACCAGCATATTTTCAGCAATATGGCATCTCTCCAAACTCCAACTCATCTGTTCCAAGTTATTTTCAGCCATATATTGTGGCTTCTCATGGGCCCTTCCGCAGCAAATATGGAGGGATGAACTATGTCCTCAACACATTATTTTCGTTACACATGGTGATTGCATTCCTTGTGGCCGTTATCCTGGACAACACAGTACCTGGAAGTCGTCAAGAACGTGGTGTATATGTGTGGTCCGAACGTGAGGTTGCAAAGAGGGAGCCTGCCGTTGCCAAAGACTATGAGCTGCCCTTCAGAATTGGCCGGGTTTTCAGATGGGTGAAATGGGTTGGACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005345 GO:0005350 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006855 GO:0006863 GO:0008150 GO:0008324 GO:0015075 GO:0015205 GO:0015207 GO:0015208 GO:0015210 GO:0015238 GO:0015291 GO:0015293 GO:0015294 GO:0015318 GO:0015851 GO:0015853 GO:0015854 GO:0015855 GO:0015857 GO:0015893 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034220 GO:0035344 GO:0042221 GO:0042493 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072530 GO:0072531 GO:0098655 GO:0098657 GO:0098702 GO:0098710 GO:0098721 GO:0098739 GO:1903716 GO:1903791 GO:1904082 GO:1904823

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Xan_ur_permease

Protein Analysis

263

Amino Acids

28.27

Weight (kDa)

9.6

Isoelectric Point (pI)

38.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Xan_ur_permease	PF00860	3 - 156	6.7e-31	Permease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27810 AT2G27810 AT2G27810 AT2G27810
fragaria_vesca	FvH4_3g24260
malus_domestica	MD03G1135100.v1.1 MD11G1157800.v1.1
prunus_persica	Prupe.6G119500_v2.0.a1 Prupe.6G119500_v2.0.a1 Prupe.6G119500_v2.0.a1
pyrus_communis	pycom03g09100 pycom11g12810
rosa_chinensis	RchiOBHm_Chr5g0043401
rosa_laevigata	RLG00000034184
rosa_multiflora	Rmu_sc0000060.1_g000066 Rmu_sc0007797.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037480
rosa_rugosa	Rorug05G0205700
rosa_samantha	Rh5AG291400 Rh5BG298000 Rh5CG327500 Rh5DG307400
rosa_wichuraiana	Rw0G010300 Rw5G027030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	143
AccB7I	CCANNNNNTGG	2 cut(s)	101, 322
AciI	CCGC	1 cut(s)	553
AcoI	YGGCCR	2 cut(s)	627, 754
AcuI	CTGAAG	1 cut(s)	730
AdeI	CACNNNGTG	1 cut(s)	610
AfaI	GTAC	2 cut(s)	166, 651
AfiI	CCNNNNNNNGG	2 cut(s)	101, 322
AgsI	TTSAA	3 cut(s)	27, 131, 245
AjnI	CCWGG	4 cut(s)	86, 100, 636, 652
AleI	CACNNNNGTG	1 cut(s)	337
AluBI	AGCT	3 cut(s)	212, 405, 739
AluI	AGCT	3 cut(s)	212, 405, 739
Alw21I	GWGCWC	1 cut(s)	204
Alw44I	GTGCAC	1 cut(s)	200
AlwNI	CAGNNNCTG	1 cut(s)	653
AoxI	GGCC	4 cut(s)	89, 545, 627, 754
ApaI	GGGCCC	1 cut(s)	549
ApaLI	GTGCAC	1 cut(s)	200
ApeKI	GCWGC	4 cut(s)	329, 362, 555, 739
AspS9I	GGNCC	4 cut(s)	177, 545, 546, 687
AsuC2I	CCSGG	1 cut(s)	758
AsuHPI	GGTGA	2 cut(s)	622, 784
AvaII	GGWCC	2 cut(s)	177, 687
BaeGI	GKGCMC	2 cut(s)	204, 549
BanII	GRGCYC	1 cut(s)	549
Bbv12I	GWGCWC	1 cut(s)	204
BbvI	GCAGC	4 cut(s)	341, 349, 567, 726
BccI	CCATC	2 cut(s)	217, 762
BceAI	ACGGC	3 cut(s)	216, 614, 704
BciT130I	CCWGG	4 cut(s)	88, 102, 638, 654
BcnI	CCSGG	1 cut(s)	758
BfuAI	ACCTGC	1 cut(s)	143
BisI	GCNGC	4 cut(s)	330, 363, 556, 740
BlsI	GCNGC	4 cut(s)	331, 364, 557, 741
Bme1390I	CCNGG	5 cut(s)	88, 102, 638, 654, 758
Bme18I	GGWCC	2 cut(s)	177, 687
BmgT120I	GGNCC	4 cut(s)	177, 545, 546, 687
BmiI	GGNNCC	3 cut(s)	178, 547, 714
BmrFI	CCNGG	5 cut(s)	88, 102, 638, 654, 758
BmsI	GCATC	5 cut(s)	92, 153, 314, 345, 489
BpuMI	CCSGG	1 cut(s)	758
Bsc4I	CCNNNNNNNGG	2 cut(s)	101, 322
Bse1I	ACTGG	1 cut(s)	172
BseBI	CCWGG	4 cut(s)	88, 102, 638, 654
BseGI	GGATG	2 cut(s)	83, 576
BseLI	CCNNNNNNNGG	2 cut(s)	101, 322
BseNI	ACTGG	1 cut(s)	172
BseSI	GKGCMC	2 cut(s)	204, 549
BseXI	GCAGC	4 cut(s)	341, 349, 567, 726
BshFI	GGCC	4 cut(s)	91, 547, 629, 756
BsiHKAI	GWGCWC	1 cut(s)	204
BsiSI	CCGG	1 cut(s)	757
BslI	CCNNNNNNNGG	2 cut(s)	101, 322
BsmI	GAATGC	1 cut(s)	617
BsnI	GGCC	4 cut(s)	91, 547, 629, 756
Bsp120I	GGGCCC	1 cut(s)	545
Bsp1286I	GDGCHC	2 cut(s)	204, 549
BspACI	CCGC	1 cut(s)	553
BspANI	GGCC	4 cut(s)	91, 547, 629, 756
BspLI	GGNNCC	3 cut(s)	178, 547, 714
BspMI	ACCTGC	1 cut(s)	143
BsrI	ACTGG	1 cut(s)	172
Bst2UI	CCWGG	4 cut(s)	88, 102, 638, 654
Bst4CI	ACNGT	1 cut(s)	649
BstC8I	GCNNGC	3 cut(s)	256, 360, 717
BstDEI	CTNAG	1 cut(s)	219
BstF5I	GGATG	2 cut(s)	83, 576
BstMWI	GCNNNNNNNGC	1 cut(s)	359
BstNI	CCWGG	4 cut(s)	88, 102, 638, 654
BstNSI	RCATGY	1 cut(s)	258
BstSCI	CCNGG	5 cut(s)	86, 100, 636, 652, 756
BstSLI	GKGCMC	2 cut(s)	204, 549
BstV1I	GCAGC	4 cut(s)	341, 349, 567, 726
BstXI	CCANNNNNNTGG	1 cut(s)	148
BsuRI	GGCC	4 cut(s)	91, 547, 629, 756
BtgZI	GCGATG	1 cut(s)	368
BtsCI	GGATG	2 cut(s)	83, 576
BtsIMutI	CAGTG	1 cut(s)	45
BveI	ACCTGC	1 cut(s)	143
Cac8I	GCNNGC	3 cut(s)	256, 360, 717
CaiI	CAGNNNCTG	1 cut(s)	653
Cfr13I	GGNCC	4 cut(s)	177, 545, 546, 687
Csp6I	GTAC	2 cut(s)	165, 650
CviAII	CATG	6 cut(s)	62, 255, 322, 346, 542, 607
CviQI	GTAC	2 cut(s)	165, 650
DdeI	CTNAG	1 cut(s)	219
DraIII	CACNNNGTG	1 cut(s)	610
EaeI	YGGCCR	2 cut(s)	627, 754
Eco147I	AGGCCT	1 cut(s)	91
Eco24I	GRGCYC	1 cut(s)	549
Eco47I	GGWCC	2 cut(s)	177, 687
Eco57I	CTGAAG	1 cut(s)	730
EcoO109I	RGGNCCY	1 cut(s)	546
EcoRII	CCWGG	4 cut(s)	86, 100, 636, 652
EcoT38I	GRGCYC	1 cut(s)	549
FaeI	CATG	6 cut(s)	65, 258, 325, 349, 545, 610
FatI	CATG	6 cut(s)	61, 254, 321, 345, 541, 606
Fnu4HI	GCNGC	4 cut(s)	330, 363, 556, 740
FokI	GGATG	2 cut(s)	70, 583
FriOI	GRGCYC	1 cut(s)	549
Fsp4HI	GCNGC	4 cut(s)	330, 363, 556, 740
GluI	GCNGC	4 cut(s)	330, 363, 556, 740
HaeIII	GGCC	4 cut(s)	91, 547, 629, 756
HapII	CCGG	1 cut(s)	757
Hin1II	CATG	6 cut(s)	65, 258, 325, 349, 545, 610
HinfI	GANTC	1 cut(s)	44
HpaII	CCGG	1 cut(s)	757
HphI	GGTGA	2 cut(s)	622, 784
Hpy166II	GTNNAC	2 cut(s)	180, 202
Hpy188I	TCNGA	4 cut(s)	411, 691, 749, 767
Hpy188III	TCNNGA	3 cut(s)	128, 262, 665
Hpy8I	GTNNAC	2 cut(s)	180, 202
HpyAV	CCTTC	3 cut(s)	125, 559, 754
HpyCH4III	ACNGT	1 cut(s)	649
HpyCH4IV	ACGT	3 cut(s)	385, 670, 694
HpyCH4V	TGCA	7 cut(s)	202, 254, 305, 329, 365, 617, 704
HpyF10VI	GCNNNNNNNGC	1 cut(s)	359
HpyF3I	CTNAG	1 cut(s)	219
HpySE526I	ACGT	3 cut(s)	385, 670, 694
Hsp92II	CATG	6 cut(s)	65, 258, 325, 349, 545, 610
LmnI	GCTCC	1 cut(s)	712
Lsp1109I	GCAGC	4 cut(s)	341, 349, 567, 726
LweI	GCATC	5 cut(s)	92, 153, 314, 345, 489
MaeII	ACGT	3 cut(s)	385, 670, 694
MaeIII	GTNAC	2 cut(s)	214, 600
MboII	GAAGA	1 cut(s)	60
MhlI	GDGCHC	2 cut(s)	204, 549
MluCI	AATT	4 cut(s)	27, 245, 309, 750
MmeI	TCCRAC	4 cut(s)	119, 271, 519, 763
MnlI	CCTC	9 cut(s)	102, 110, 269, 287, 388, 560, 593, 691, 702
MseI	TTAA	2 cut(s)	188, 790
MslI	CAYNNNNRTG	2 cut(s)	221, 337
MspI	CCGG	1 cut(s)	757
MspR9I	CCNGG	5 cut(s)	88, 102, 638, 654, 758
Mva1269I	GAATGC	1 cut(s)	617
MvaI	CCWGG	4 cut(s)	88, 102, 638, 654
MwoI	GCNNNNNNNGC	1 cut(s)	359
NciI	CCSGG	1 cut(s)	758
NlaIII	CATG	6 cut(s)	65, 258, 325, 349, 545, 610
NlaIV	GGNNCC	3 cut(s)	178, 547, 714
NmuCI	GTSAC	1 cut(s)	214
NspI	RCATGY	1 cut(s)	258
OliI	CACNNNNGTG	1 cut(s)	337
PaeI	GCATGC	1 cut(s)	258
PceI	AGGCCT	1 cut(s)	91
PcsI	WCGNNNNNNNCGW	1 cut(s)	667
PctI	GAATGC	1 cut(s)	617
PfeI	GAWTC	1 cut(s)	44
PflMI	CCANNNNNTGG	2 cut(s)	101, 322
PfoI	TCCNGGA	1 cut(s)	636
PkrI	GCNGC	4 cut(s)	331, 364, 557, 741
Psp6I	CCWGG	4 cut(s)	86, 100, 636, 652
PspGI	CCWGG	4 cut(s)	86, 100, 636, 652
PspN4I	GGNNCC	3 cut(s)	178, 547, 714
PspOMI	GGGCCC	1 cut(s)	545
PspPI	GGNCC	4 cut(s)	177, 545, 546, 687
PstNI	CAGNNNCTG	1 cut(s)	653
RsaI	GTAC	2 cut(s)	166, 651
RsaNI	GTAC	2 cut(s)	165, 650
RseI	CAYNNNNRTG	2 cut(s)	221, 337
SaqAI	TTAA	2 cut(s)	188, 790
SatI	GCNGC	4 cut(s)	330, 363, 556, 740
Sau96I	GGNCC	4 cut(s)	177, 545, 546, 687
ScrFI	CCNGG	5 cut(s)	88, 102, 638, 654, 758
SduI	GDGCHC	2 cut(s)	204, 549
SfaNI	GCATC	5 cut(s)	92, 153, 314, 345, 489
SinI	GGWCC	2 cut(s)	177, 687
SmiMI	CAYNNNNRTG	2 cut(s)	221, 337
SphI	GCATGC	1 cut(s)	258
Sse9I	AATT	4 cut(s)	27, 245, 309, 750
SseBI	AGGCCT	1 cut(s)	91
SsiI	CCGC	1 cut(s)	553
SspI	AATATT	1 cut(s)	415
StuI	AGGCCT	1 cut(s)	91
StyD4I	CCNGG	5 cut(s)	86, 100, 636, 652, 756
TaaI	ACNGT	1 cut(s)	649
TaiI	ACGT	3 cut(s)	388, 673, 697
TaqI	TCGA	1 cut(s)	115
TasI	AATT	4 cut(s)	27, 245, 309, 750
TfiI	GAWTC	1 cut(s)	44
Tru1I	TTAA	2 cut(s)	188, 790
Tru9I	TTAA	2 cut(s)	188, 790
TscAI	CASTG	1 cut(s)	45
TseFI	GTSAC	1 cut(s)	214
TseI	GCWGC	4 cut(s)	329, 362, 555, 739
Tsp45I	GTSAC	1 cut(s)	214
TspDTI	ATGAA	2 cut(s)	334, 587
TspRI	CASTG	1 cut(s)	45
Van91I	CCANNNNNTGG	2 cut(s)	101, 322
VneI	GTGCAC	1 cut(s)	200
VpaK11BI	GGWCC	2 cut(s)	177, 687
XceI	RCATGY	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.