Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0007879

Physical Location & Seq

Genomic Coordinates Reverse (-)

15322456 .. 15333023

Gene Structure 10568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1157800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2100 bp

ATGTCAAACTCCGACCCGAAAACCCGACCCCGTCCGGGTCCATGGCCTCCGGTCTCGGAGTCCTCCCCAATGCCCCCTTCTTCCTGGGCTAAGAAAACCGGGTTCCGCCCCAAGTTCTCCGGCGAGACCAATGCCAGTGATTCTGGCCAGATATCGCAGCCGCCGCCCCGGCCCCGTGAGCCGGAAGCCCAGCCCGATCTCGAGGCTGGTCGGGCCCGCCCCCAACCGATGCCAAATGGTGTGCCCGAGCTAGCGGCAGCGGCACCTTTGGATAAGGATAATAAGGCGAAGAGGAGGAAGGAGTCTGATGGAGGGTCGAAGAGTGCGGCTAATGGGCCCAATGGGGCTAATGGGCAGGCTGCGGCTGGGACTACGGAGCCCAATTCGCAACCGCGGAGGGCGGCCAGGAGTGAGGAGGTGGTTGATGTTTTGCCACACGGGATTGACGATGATGGGTATGTGTCTAGACACTCTCATATGATGTATGAGCTCAGAGATACTCCTGGACTGGTTCCCATTGGTCTCTACGGGTTTCAGCATTATCTTTCCATGTTGGGTTCGATAATTCTAATTCCACTCGTCATAGTTCCGGCAATGGGTGGTACTTATGAGGATACTGCAAATGTTGTCTCCACAGTGCTTTTTGTTTCGGGAGTGACCACTCTCTTGCAGACATCGTTTGGATCCAGATTGCCCTTGATACAGGGCCCATCATTTGTTTACCTAGCTCCTGCATTGGCGATAATCAACTCCCCAGAATTTCAAGGACTCAATGGAAATAATTTTAAGCATATCATGAAGGAGCTACAGGGGGCTGTAATAATAGGTTCAGCTTTTCAAGCAATACTTGGATATAGTGGACTAATGTCAGTATTTTTGAGGTTGATCAATCCAGTGGTTGTGTCACCAACGATTGCTGCTGTTGGACTTTCTTTCTATAGTTATGGTTTCCCGTTAGTTGGTAATTGTCTCGAGATTGGTGCAGTGCAGATATTAGTTGTCATTCTTTTTTCTCTTTACCTACGAAAGATATCTGTTTTTGGTCATCGTGTATTTCTGATATATGCGGTTCCGTTGGGTCTGGCAATCACATGGTCGGCTGCTTTCCTACTAACTGAAGCTGGAGCATATAGCTATAAAGGTTGTGATATAAATGTACCTGCATCAAACATAGTATCTGAACATTGCAGAAAGCATGTTTTGAGGATGAAGAGCTGTCGAGTTGATACTTCTCATGCACTAAGGTCTTCCCCCTGGTTTAGGTTTCCCTATCCGTTGCAATGGGGTACTCCTGTCTTCCACTGGAAAATGGCCCTTGTCATGTGTGTGGTATCAATTATCGCGTCTGTTGATTCGATTGGCTCATATCATGCATCGTCATTATTGGTGGCATCCAGACCTCCTACTCCTGGTGTTCTTAGTCGAGGGATTGGTCTGGAAGGTCTTTCTAGTGTCTTGGCTGGTCTATGGGGTACTGGAACAGGGTCCACGAGCTTAACTGAAAATGTGCACACAATAGCCGTCACTAAGATGGGAAGCCGTAGAGCTGTTGGATTGGGTGCATGCATTTTGATCGTCTTATCCCTTGTCGGTAAAGTTGGAGGCTTTCTAGCATCTATTCCCCAAGTCATGGTTGCCGCACTGCTGTGCTTCATGTGGGCGATGCTTGCTGCATTAGGCCTGTCAAATCTACGTTATAGTGAGGCTGGAAGCTCTAGGAATATTATCATAGTCGGGTTATCTTTGTTTTTCTCGCTTTCAATACCGGCCTACTTTCAGCAATATGGCATCTCTCCAAACTCCAACTTATCTGTTCCAAGTTATTTTCAGCCATACATTATAGCTTCTCATGGGCCCTTCCGCAGCAAATATGGAGGGGTGAACTATGTGCTGAACACGTTATTCTCATTACACATGGTGGTTGCATTCCTTGTGGCTGTTATCCTGGATAACACTGTCCCTGGCAGTCGTCAAGAACGTGGGGTGTATGTGTGGTCTGAATCTGAAGTTGCTAAGAGGGAGCCTGCTGTTGCCAAGGACTATCAGCTGCCCTTCAGAATTAGCCGGGTTTTCAGATGGGTGAAATGGGTTGGCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005345 GO:0005350 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006855 GO:0006863 GO:0008150 GO:0008324 GO:0015075 GO:0015205 GO:0015207 GO:0015208 GO:0015210 GO:0015238 GO:0015291 GO:0015293 GO:0015294 GO:0015318 GO:0015851 GO:0015853 GO:0015854 GO:0015855 GO:0015857 GO:0015893 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034220 GO:0035344 GO:0042221 GO:0042493 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072530 GO:0072531 GO:0098655 GO:0098657 GO:0098702 GO:0098710 GO:0098721 GO:0098739 GO:1903716 GO:1903791 GO:1904082 GO:1904823

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Xan_ur_permease

Protein Analysis

700

Amino Acids

75.28

Weight (kDa)

9.48

Isoelectric Point (pI)

46.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Xan_ur_permease	PF00860	175 - 592	6.8e-67	Permease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27810 AT2G27810 AT2G27810 AT2G27810
fragaria_vesca	FvH4_3g24260
malus_domestica	MD03G1135100.v1.1 MD11G1157800.v1.1
prunus_persica	Prupe.6G119500_v2.0.a1 Prupe.6G119500_v2.0.a1 Prupe.6G119500_v2.0.a1
pyrus_communis	pycom03g09100 pycom11g12810
rosa_chinensis	RchiOBHm_Chr5g0043401
rosa_laevigata	RLG00000034184
rosa_multiflora	Rmu_sc0000060.1_g000066 Rmu_sc0007797.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037480
rosa_rugosa	Rorug05G0205700
rosa_samantha	Rh5AG291400 Rh5BG298000 Rh5CG327500 Rh5DG307400
rosa_wichuraiana	Rw0G010300 Rw5G027030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1168
AccB1I	GGYRCC	1 cut(s)	262
AccB7I	CCANNNNNTGG	1 cut(s)	1630
AccII	CGCG	2 cut(s)	394, 1343
AclWI	GGATC	2 cut(s)	678, 691
AcoI	YGGCCR	2 cut(s)	145, 402
AcsI	RAATTY	1 cut(s)	758
AcuI	CTGAAG	3 cut(s)	1137, 2025, 2038
AdeI	CACNNNGTG	1 cut(s)	1918
AfaI	GTAC	4 cut(s)	604, 1158, 1288, 1474
AfiI	CCNNNNNNNGG	7 cut(s)	35, 181, 596, 959, 1260, 1409, 1630
AflIII	ACRYGT	1 cut(s)	1896
AgsI	TTSAA	3 cut(s)	764, 839, 1761
AjnI	CCWGG	7 cut(s)	83, 404, 502, 1253, 1408, 1944, 1960
AjuI	GAANNNNNNNTTGG	2 cut(s)	61, 93
AleI	CACNNNNGTG	1 cut(s)	1645
Alw21I	GWGCWC	2 cut(s)	492, 1512
Alw26I	GTCTC	5 cut(s)	58, 119, 527, 634, 974
Alw44I	GTGCAC	1 cut(s)	1508
AlwI	GGATC	2 cut(s)	678, 691
Ama87I	CYCGRG	3 cut(s)	200, 245, 971
ApaI	GGGCCC	4 cut(s)	217, 339, 710, 1857
ApaLI	GTGCAC	1 cut(s)	1508
ApeKI	GCWGC	8 cut(s)	157, 257, 359, 917, 1100, 1670, 1863, 2047
ApoI	RAATTY	1 cut(s)	758
AsuC2I	CCSGG	4 cut(s)	36, 100, 169, 2066
AsuHPI	GGTGA	3 cut(s)	897, 1891, 2092
AsuNHI	GCTAGC	1 cut(s)	250
AvaI	CYCGRG	3 cut(s)	200, 245, 971
AvaII	GGWCC	2 cut(s)	38, 1485
BaeGI	GKGCMC	6 cut(s)	217, 246, 339, 710, 1512, 1857
BaeI	ACNNNNGTAYC	2 cut(s)	1278, 1311
BalI	TGGCCA	1 cut(s)	147
BamHI	GGATCC	1 cut(s)	683
BanI	GGYRCC	1 cut(s)	262
BanII	GRGCYC	6 cut(s)	217, 339, 381, 492, 710, 1857
BauI	CACGAG	1 cut(s)	1489
BbsI	GAAGAC	2 cut(s)	1239, 1288
Bbv12I	GWGCWC	2 cut(s)	492, 1512
BbvI	GCAGC	8 cut(s)	169, 269, 346, 904, 1087, 1657, 1875, 2034
BccI	CCATC	5 cut(s)	302, 446, 718, 1525, 2070
BceAI	ACGGC	2 cut(s)	1505, 1524
BcgI	CGANNNNNNTGC	6 cut(s)	113, 147, 962, 996, 1555, 1589
BciT130I	CCWGG	7 cut(s)	85, 406, 504, 1255, 1410, 1946, 1962
BciVI	GTATCC	1 cut(s)	607
BclI	TGATCA	1 cut(s)	885
BcnI	CCSGG	4 cut(s)	36, 100, 169, 2066
BcoDI	GTCTC	5 cut(s)	58, 119, 527, 634, 974
BfaI	CTAG	6 cut(s)	251, 465, 725, 1449, 1610, 1716
BfmI	CTRYAG	2 cut(s)	806, 937
BfuAI	ACCTGC	1 cut(s)	1168
BfuI	GTATCC	1 cut(s)	607
BglI	GCCNNNNNGGC	1 cut(s)	169
Bme18I	GGWCC	2 cut(s)	38, 1485
BmeT110I	CYCGRG	3 cut(s)	200, 245, 971
BmsI	GCATC	7 cut(s)	219, 1172, 1382, 1400, 1622, 1653, 1797
BmtI	GCTAGC	1 cut(s)	254
BoxI	GACNNNNGTC	1 cut(s)	865
BpiI	GAAGAC	2 cut(s)	1239, 1288
BpmI	CTGGAG	1 cut(s)	1143
BpuMI	CCSGG	4 cut(s)	36, 100, 169, 2066
BsaI	GGTCTC	3 cut(s)	58, 119, 527
BsaJI	CCNNGG	7 cut(s)	41, 84, 167, 392, 1253, 1960, 2034
BsaWI	WCCGGW	1 cut(s)	49
Bsc4I	CCNNNNNNNGG	7 cut(s)	35, 181, 596, 959, 1260, 1409, 1630
Bse118I	RCCGGY	1 cut(s)	1765
Bse1I	ACTGG	5 cut(s)	135, 513, 893, 1307, 1480
Bse3DI	GCAATG	3 cut(s)	600, 1183, 1286
BseBI	CCWGG	7 cut(s)	85, 406, 504, 1255, 1410, 1946, 1962
BseDI	CCNNGG	7 cut(s)	41, 84, 167, 392, 1253, 1960, 2034
BseGI	GGATG	2 cut(s)	1212, 1391
BseLI	CCNNNNNNNGG	7 cut(s)	35, 181, 596, 959, 1260, 1409, 1630
BseMI	GCAATG	3 cut(s)	600, 1183, 1286
BseMII	CTCAG	1 cut(s)	505
BseNI	ACTGG	5 cut(s)	135, 513, 893, 1307, 1480
BseRI	GAGGAG	2 cut(s)	307, 428
BseSI	GKGCMC	6 cut(s)	217, 246, 339, 710, 1512, 1857
BseXI	GCAGC	8 cut(s)	169, 269, 346, 904, 1087, 1657, 1875, 2034
BseYI	CCCAGC	2 cut(s)	189, 365
BsgI	GTGCAG	2 cut(s)	1002, 1007
Bsh1236I	CGCG	2 cut(s)	394, 1343
BshNI	GGYRCC	1 cut(s)	262
BsiHKAI	GWGCWC	2 cut(s)	492, 1512
BsiHKCI	CYCGRG	3 cut(s)	200, 245, 971
BsiSI	CCGG	9 cut(s)	35, 50, 99, 120, 169, 182, 590, 1766, 2065
BslFI	GGGAC	2 cut(s)	382, 1943
BslI	CCNNNNNNNGG	7 cut(s)	35, 181, 596, 959, 1260, 1409, 1630
BsmAI	GTCTC	5 cut(s)	58, 119, 527, 634, 974
BsmFI	GGGAC	2 cut(s)	382, 1943
BsmI	GAATGC	1 cut(s)	1925
Bso31I	GGTCTC	3 cut(s)	58, 119, 527
BsoBI	CYCGRG	3 cut(s)	200, 245, 971
Bsp120I	GGGCCC	4 cut(s)	213, 335, 706, 1853
Bsp1286I	GDGCHC	8 cut(s)	217, 246, 339, 381, 492, 710, 1512, 1857
Bsp143I	GATC	4 cut(s)	196, 683, 885, 1572
Bsp19I	CCATGG	1 cut(s)	41
BspCNI	CTCAG	1 cut(s)	504
BspFNI	CGCG	2 cut(s)	394, 1343
BspHI	TCATGA	1 cut(s)	795
BspMI	ACCTGC	1 cut(s)	1168
BspOI	GCTAGC	1 cut(s)	254
BspPI	GGATC	2 cut(s)	678, 691
BspQI	GCTCTTC	1 cut(s)	1205
BspT107I	GGYRCC	1 cut(s)	262
BspTNI	GGTCTC	3 cut(s)	58, 119, 527
BsrDI	GCAATG	3 cut(s)	600, 1183, 1286
BsrFI	RCCGGY	1 cut(s)	1765
BsrI	ACTGG	5 cut(s)	135, 513, 893, 1307, 1480
BssAI	RCCGGY	1 cut(s)	1765
BssECI	CCNNGG	7 cut(s)	41, 84, 167, 392, 1253, 1960, 2034
BssMI	GATC	4 cut(s)	196, 683, 885, 1572
BssSI	CACGAG	1 cut(s)	1489
BssT1I	CCWWGG	2 cut(s)	41, 2034
Bst2BI	CACGAG	1 cut(s)	1489
Bst2UI	CCWGG	7 cut(s)	85, 406, 504, 1255, 1410, 1946, 1962
Bst4CI	ACNGT	2 cut(s)	637, 1957
Bst6I	CTCTTC	3 cut(s)	284, 314, 1205
BstC8I	GCNNGC	6 cut(s)	217, 252, 357, 1564, 1668, 2025
BstDEI	CTNAG	6 cut(s)	90, 491, 1241, 1418, 1527, 2013
BstDSI	CCRYGG	2 cut(s)	41, 392
BstENI	CCTNNNNNAGG	1 cut(s)	1258
BstF5I	GGATG	2 cut(s)	1212, 1391
BstFNI	CGCG	2 cut(s)	394, 1343
BstKTI	GATC	4 cut(s)	199, 686, 888, 1575
BstMAI	GTCTC	5 cut(s)	58, 119, 527, 634, 974
BstMBI	GATC	4 cut(s)	196, 683, 885, 1572
BstMWI	GCNNNNNNNGC	8 cut(s)	163, 169, 178, 212, 260, 385, 839, 1667
BstNI	CCWGG	7 cut(s)	85, 406, 504, 1255, 1410, 1946, 1962
BstNSI	RCATGY	2 cut(s)	1199, 1566
BstPAI	GACNNNNGTC	1 cut(s)	865
BstSFI	CTRYAG	2 cut(s)	806, 937
BstSLI	GKGCMC	6 cut(s)	217, 246, 339, 710, 1512, 1857
BstUI	CGCG	2 cut(s)	394, 1343
BstV1I	GCAGC	8 cut(s)	169, 269, 346, 904, 1087, 1657, 1875, 2034
BstV2I	GAAGAC	2 cut(s)	1239, 1288
BstX2I	RGATCY	1 cut(s)	683
BstYI	RGATCY	1 cut(s)	683
BsuI	GTATCC	1 cut(s)	607
BtgI	CCRYGG	2 cut(s)	41, 392
BtgZI	GCGATG	1 cut(s)	1676
BtsCI	GGATG	2 cut(s)	1212, 1391
BtsI	GCAGTG	2 cut(s)	990, 1640
BtsIMutI	CAGTG	7 cut(s)	142, 642, 900, 990, 1300, 1640, 1953
BveI	ACCTGC	1 cut(s)	1168
Cac8I	GCNNGC	6 cut(s)	217, 252, 357, 1564, 1668, 2025
CciI	TCATGA	1 cut(s)	795
Cfr10I	RCCGGY	1 cut(s)	1765
Cfr42I	CCGCGG	1 cut(s)	395
CseI	GACGC	1 cut(s)	1332
Csp6I	GTAC	4 cut(s)	603, 1157, 1287, 1473
CviQI	GTAC	4 cut(s)	603, 1157, 1287, 1473
DdeI	CTNAG	6 cut(s)	90, 491, 1241, 1418, 1527, 2013
DpnI	GATC	4 cut(s)	198, 685, 887, 1574
DpnII	GATC	4 cut(s)	196, 683, 885, 1572
DraIII	CACNNNGTG	1 cut(s)	1918
EaeI	YGGCCR	2 cut(s)	145, 402
Eam1104I	CTCTTC	3 cut(s)	284, 314, 1205
EarI	CTCTTC	3 cut(s)	284, 314, 1205
EciI	GGCGGA	1 cut(s)	95
Ecl136II	GAGCTC	1 cut(s)	490
Eco130I	CCWWGG	2 cut(s)	41, 2034
Eco147I	AGGCCT	1 cut(s)	1680
Eco24I	GRGCYC	6 cut(s)	217, 339, 381, 492, 710, 1857
Eco31I	GGTCTC	3 cut(s)	58, 119, 527
Eco32I	GATATC	2 cut(s)	153, 1032
Eco47I	GGWCC	2 cut(s)	38, 1485
Eco53kI	GAGCTC	1 cut(s)	490
Eco57I	CTGAAG	3 cut(s)	1137, 2025, 2038
Eco88I	CYCGRG	3 cut(s)	200, 245, 971
EcoICRI	GAGCTC	1 cut(s)	490
EcoNI	CCTNNNNNAGG	1 cut(s)	1258
EcoO109I	RGGNCCY	2 cut(s)	706, 1854
EcoRII	CCWGG	7 cut(s)	83, 404, 502, 1253, 1408, 1944, 1960
EcoRV	GATATC	2 cut(s)	153, 1032
EcoT14I	CCWWGG	2 cut(s)	41, 2034
EcoT22I	ATGCAT	2 cut(s)	1375, 1568
EcoT38I	GRGCYC	6 cut(s)	217, 339, 381, 492, 710, 1857
ErhI	CCWWGG	2 cut(s)	41, 2034
FalI	AAGNNNNNCTT	2 cut(s)	831, 863
FaqI	GGGAC	2 cut(s)	382, 1943
FauI	CCCGC	1 cut(s)	224
FauNDI	CATATG	1 cut(s)	477
FbaI	TGATCA	1 cut(s)	885
FokI	GGATG	2 cut(s)	1219, 1378
FriOI	GRGCYC	6 cut(s)	217, 339, 381, 492, 710, 1857
FspBI	CTAG	6 cut(s)	251, 465, 725, 1449, 1610, 1716
GsaI	CCCAGC	2 cut(s)	193, 369
GsuI	CTGGAG	1 cut(s)	1143
HapII	CCGG	9 cut(s)	35, 50, 99, 120, 169, 182, 590, 1766, 2065
HgaI	GACGC	1 cut(s)	1332
HinfI	GANTC	6 cut(s)	59, 140, 302, 768, 1352, 2000
HpaII	CCGG	9 cut(s)	35, 50, 99, 120, 169, 182, 590, 1766, 2065
HphI	GGTGA	3 cut(s)	897, 1891, 2092
Hpy166II	GTNNAC	5 cut(s)	721, 860, 1488, 1510, 1882
Hpy8I	GTNNAC	5 cut(s)	721, 860, 1488, 1510, 1882
HpyAV	CCTTC	6 cut(s)	87, 292, 793, 1433, 1867, 2062
HpyCH4III	ACNGT	2 cut(s)	637, 1957
HpyCH4IV	ACGT	3 cut(s)	1693, 1898, 1978
HpyF10VI	GCNNNNNNNGC	8 cut(s)	163, 169, 178, 212, 260, 385, 839, 1667
HpyF3I	CTNAG	6 cut(s)	90, 491, 1241, 1418, 1527, 2013
HpySE526I	ACGT	3 cut(s)	1693, 1898, 1978
Ksp22I	TGATCA	1 cut(s)	885
KspI	CCGCGG	1 cut(s)	395
Kzo9I	GATC	4 cut(s)	196, 683, 885, 1572
LguI	GCTCTTC	1 cut(s)	1205
LmnI	GCTCC	5 cut(s)	376, 733, 802, 1124, 2020
Lsp1109I	GCAGC	8 cut(s)	169, 269, 346, 904, 1087, 1657, 1875, 2034
LweI	GCATC	7 cut(s)	219, 1172, 1382, 1400, 1622, 1653, 1797
MaeI	CTAG	6 cut(s)	251, 465, 725, 1449, 1610, 1716
MaeII	ACGT	3 cut(s)	1693, 1898, 1978
MaeIII	GTNAC	3 cut(s)	655, 903, 1522
MalI	GATC	4 cut(s)	198, 685, 887, 1574
MboI	GATC	4 cut(s)	196, 683, 885, 1572
MboII	GAAGA	6 cut(s)	72, 301, 331, 1222, 1239, 1288
MflI	RGATCY	1 cut(s)	683
MhlI	GDGCHC	8 cut(s)	217, 246, 339, 381, 492, 710, 1512, 1857
MlsI	TGGCCA	1 cut(s)	147
MluCI	AATT	8 cut(s)	382, 564, 570, 758, 781, 964, 1335, 2058
MluNI	TGGCCA	1 cut(s)	147
MlyI	GAGTC	3 cut(s)	68, 311, 762
MmeI	TCCRAC	5 cut(s)	36, 904, 1531, 1579, 1827
Mox20I	TGGCCA	1 cut(s)	147
Mph1103I	ATGCAT	2 cut(s)	1375, 1568
MscI	TGGCCA	1 cut(s)	147
MseI	TTAA	2 cut(s)	786, 1496
MslI	CAYNNNNRTG	3 cut(s)	1325, 1529, 1645
Msp20I	TGGCCA	1 cut(s)	147
MspA1I	CMGCKG	3 cut(s)	260, 394, 2047
MspI	CCGG	9 cut(s)	35, 50, 99, 120, 169, 182, 590, 1766, 2065
Mva1269I	GAATGC	1 cut(s)	1925
MvaI	CCWGG	7 cut(s)	85, 406, 504, 1255, 1410, 1946, 1962
MvnI	CGCG	2 cut(s)	394, 1343
MwoI	GCNNNNNNNGC	8 cut(s)	163, 169, 178, 212, 260, 385, 839, 1667
NciI	CCSGG	4 cut(s)	36, 100, 169, 2066
NcoI	CCATGG	1 cut(s)	41
NdeI	CATATG	1 cut(s)	477
NdeII	GATC	4 cut(s)	196, 683, 885, 1572
NheI	GCTAGC	1 cut(s)	250
NmuCI	GTSAC	3 cut(s)	655, 903, 1522
NsiI	ATGCAT	2 cut(s)	1375, 1568
NspI	RCATGY	2 cut(s)	1199, 1566
OliI	CACNNNNGTG	1 cut(s)	1645
PaeI	GCATGC	1 cut(s)	1566
PaeR7I	CTCGAG	2 cut(s)	200, 971
PagI	TCATGA	1 cut(s)	795
PceI	AGGCCT	1 cut(s)	1680
PciSI	GCTCTTC	1 cut(s)	1205
PcsI	WCGNNNNNNNCGW	2 cut(s)	444, 1975
PctI	GAATGC	1 cut(s)	1925
PfeI	GAWTC	3 cut(s)	140, 1352, 2000
PflFI	GACNNNGTC	1 cut(s)	30
PflMI	CCANNNNNTGG	1 cut(s)	1630
PfoI	TCCNGGA	2 cut(s)	502, 1944
PleI	GAGTC	3 cut(s)	67, 310, 762
PpsI	GAGTC	3 cut(s)	67, 310, 762
PshAI	GACNNNNGTC	1 cut(s)	865
Psp124BI	GAGCTC	1 cut(s)	492
Psp6I	CCWGG	7 cut(s)	83, 404, 502, 1253, 1408, 1944, 1960
PspFI	CCCAGC	2 cut(s)	189, 365
PspGI	CCWGG	7 cut(s)	83, 404, 502, 1253, 1408, 1944, 1960
PspOMI	GGGCCC	4 cut(s)	213, 335, 706, 1853
PsuI	RGATCY	1 cut(s)	683
PsyI	GACNNNGTC	1 cut(s)	30
PvuII	CAGCTG	1 cut(s)	2047
RsaI	GTAC	4 cut(s)	604, 1158, 1288, 1474
RsaNI	GTAC	4 cut(s)	603, 1157, 1287, 1473
RseI	CAYNNNNRTG	3 cut(s)	1325, 1529, 1645
SacI	GAGCTC	1 cut(s)	492
SacII	CCGCGG	1 cut(s)	395
SapI	GCTCTTC	1 cut(s)	1205
SaqAI	TTAA	2 cut(s)	786, 1496
Sau3AI	GATC	4 cut(s)	196, 683, 885, 1572
SchI	GAGTC	3 cut(s)	68, 311, 762
SduI	GDGCHC	8 cut(s)	217, 246, 339, 381, 492, 710, 1512, 1857
SfaNI	GCATC	7 cut(s)	219, 1172, 1382, 1400, 1622, 1653, 1797
SfcI	CTRYAG	2 cut(s)	806, 937
Sfr274I	CTCGAG	2 cut(s)	200, 971
Sfr303I	CCGCGG	1 cut(s)	395
SgrBI	CCGCGG	1 cut(s)	395
SinI	GGWCC	2 cut(s)	38, 1485
SlaI	CTCGAG	2 cut(s)	200, 971
SmiMI	CAYNNNNRTG	3 cut(s)	1325, 1529, 1645
SmlI	CTYRAG	2 cut(s)	200, 971
SmoI	CTYRAG	2 cut(s)	200, 971
SphI	GCATGC	1 cut(s)	1566
Sse9I	AATT	8 cut(s)	382, 564, 570, 758, 781, 964, 1335, 2058
SseBI	AGGCCT	1 cut(s)	1680
SspI	AATATT	1 cut(s)	1723
SspMI	CTAG	6 cut(s)	251, 465, 725, 1449, 1610, 1716
SstI	GAGCTC	1 cut(s)	492
StuI	AGGCCT	1 cut(s)	1680
StyI	CCWWGG	2 cut(s)	41, 2034
TaaI	ACNGT	2 cut(s)	637, 1957
TaiI	ACGT	3 cut(s)	1696, 1901, 1981
TaqI	TCGA	7 cut(s)	201, 317, 560, 972, 1219, 1355, 1423
TasI	AATT	8 cut(s)	382, 564, 570, 758, 781, 964, 1335, 2058
TauI	GCSGC	8 cut(s)	163, 166, 257, 263, 329, 365, 404, 1640
TfiI	GAWTC	3 cut(s)	140, 1352, 2000
Tru1I	TTAA	2 cut(s)	786, 1496
Tru9I	TTAA	2 cut(s)	786, 1496
TscAI	CASTG	7 cut(s)	142, 642, 900, 990, 1307, 1647, 1960
TseFI	GTSAC	3 cut(s)	655, 903, 1522
TseI	GCWGC	8 cut(s)	157, 257, 359, 917, 1100, 1670, 1863, 2047
Tsp45I	GTSAC	3 cut(s)	655, 903, 1522
TspDTI	ATGAA	3 cut(s)	812, 1223, 1642
TspGWI	ACGGA	3 cut(s)	389, 1062, 1263
TspRI	CASTG	7 cut(s)	142, 642, 900, 990, 1307, 1647, 1960
Tth111I	GACNNNGTC	1 cut(s)	30
Van91I	CCANNNNNTGG	1 cut(s)	1630
VneI	GTGCAC	1 cut(s)	1508
VpaK11BI	GGWCC	2 cut(s)	38, 1485
XagI	CCTNNNNNAGG	1 cut(s)	1258
XapI	RAATTY	1 cut(s)	758
XbaI	TCTAGA	1 cut(s)	464
XceI	RCATGY	2 cut(s)	1199, 1566
XhoI	CTCGAG	2 cut(s)	200, 971
XspI	CTAG	6 cut(s)	251, 465, 725, 1449, 1610, 1716
Zsp2I	ATGCAT	2 cut(s)	1375, 1568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.