Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0007879

Physical Location & Seq

Genomic Coordinates Reverse (-)

13518313 .. 13527625

Gene Structure 9313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1135100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2121 bp

ATGTCCAACTCCGACCCCAAAACAAGACCCCGTCCGGGTACATGGCCTCCGGTCCCGGAGTCCTCCCCAATGCCCCCTTCTTCCTGGGCTAAGAAAACCGGCTTCCGCCCCAAGTTCTCCGGCGAGACCAATGCCAGCGATTCTGGCCAGATATCCCTGCCGCCGCCCCGGCCCCGAGAGCCTCAAACCCAGCCCGATCTCGAAGCTGGTCGGGCTCGACCCCAACCGGCGCCCAATGGTGTACCCGAGCGCGAGATGGCTACCCCGCCACCAGCGCCAGCGCCGCCTTCAGAAAAGGATAATAAGGTGAAGAGGAGGAAGGAGTCTGATGGAGGGTCGAAGAGTGCGGCCAATGGGCCCAGTGGGGTTAATGGGCAGGCTGCGACCGCGCCCACGGAGCCCAATTCGCAACCGCGGAGGGCATCCAGGAGTGAGGAGGTGGTTGATGTTTTGCCACACGGGGTTGATGATGATGGGTATGTGGCTAGGCACTCTCATATGAAGTATGAGCTCAGAGATACACCTGGTCTTGTTCCCATTGGCCTCTATGGGTTCCAGCATTATCTCTCCATGTTGGGTTCGATAATTCTAATTCCACTCGTCATAGTTCCAGCAATGGGTGGTACTTACGAGGATACTGCAAATGTTGTCTCCACAGTGCTTTTTGTTTCGGGAGTGACCACTCTCTTGCAGACATCGTTTGGATCCAGATTGCCTTTGATACAGGGCCCCTCATTTGTTTACCTAGCTCCTGCATTGGCGATAATCAACTCCCCAGAATTTCAAGGACTCAATGGAAATAATTTTAAGCATATCATGAAGGAGCTACAGGGGGCTGTAATAATAGGTTCAGCTTTTCAAGCAATACTTGGATATAGTGGACTAATGTCAATATTTTTGAGGTTGATCAATCCAGTGGTTGTGTCACCAACAATTGCTGCTGTTGGACTTTCTTTCTATAGTTATGGTTTCCCGTTAGTTGGTAATTGTCTTGAGATTGGTGCGGTGCAGATACTAGTGGTCATTATTTTTTCTCTTTACCTACGGAAGATTTCCGTTTTTGGTCATCGTGTATTTCTTATATATGCGGTTCCTTTGGGTCTGGCAATCACATGGTCGGCTGCTTTCCTACTAACTGAAGCTGGAGCATATAGCTATAAAGGTTGTGATATAAATGTACCTGCATCAAACATAGTATCTGAACATTGCAGAAAGCATGTTTTGAGGATGAAGAGCTGTCGAGTTGATACTTCTCATGCACTAAGATCTGCCCCCTGGTTTAGGTTTCCCTATCCATTACAATGGGGTACTCCTGTCTTCCACTGGAAAATGGCCCTTGTCATGTCTGTGGTATCAATTATTGCATCAGTTGATTCGATTGGCTCATATCATGCATCTTCATTATTGGTGGCATCCAGACCTCCTACTCCTGGTGTTCTTAGTCGAGGGATTGGTCTGGAAGGTCTTTCCAGTGTCTTGGCTGGTCTATGGGGTACTGGAACAGGGTCCACAAGCTTAACTGAAAATGTGCACACAATAGCCGTCACTAAGATGGGAAGCCGTAGAGCTGTTGAATTGGGTGCATGCGTTTTGATCGTCTTATCCCTTGTCGGTAAAGTTGGAGGCTTTCTAGCATCTATTCCTCAAGTTGTGGTTGCCGCACTGCTGTGCTTCATGTGGGCGATGCTTGCTGCATTAGGCCTATCAAATCTACGTTATAGTGAGGCTGGAAGCTCTAGGAATATTATCATAGTCGGGTTATCTTTGTTTTTCTCGCTTTCAATACCGGCCTACTTTCAGCAATATGGCATCTCTCCAAACTCCAACTTATCTGTTCCGAGTTATTTTCAACCATACATTATAGCTTCTCATGGACCCTTCCGCAGCAAATATGGAGGGGTGAACTATGTGCTGAACACATTGTTCTCATTACACATGGTGGTTGCATTCCTTGTGGCTTTTATCCTGGATAACACTGTACCTGGCAGTCGTCAAGAACGCGGGGTGTATGTGTGGTCTGAAGCTGAGGTTGCTAAGAGGGAGCCTGCTGTTGCCAAGGACTACGAGCTGCCCTTCAGAATTAGCAGGGTTTTCAGATGGGTGAAATGGGTTGGCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005345 GO:0005350 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006855 GO:0006863 GO:0008150 GO:0008324 GO:0015075 GO:0015205 GO:0015207 GO:0015208 GO:0015210 GO:0015238 GO:0015291 GO:0015293 GO:0015294 GO:0015318 GO:0015851 GO:0015853 GO:0015854 GO:0015855 GO:0015857 GO:0015893 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034220 GO:0035344 GO:0042221 GO:0042493 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072530 GO:0072531 GO:0098655 GO:0098657 GO:0098702 GO:0098710 GO:0098721 GO:0098739 GO:1903716 GO:1903791 GO:1904082 GO:1904823

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Xan_ur_permease

Protein Analysis

707

Amino Acids

76.15

Weight (kDa)

9.5

Isoelectric Point (pI)

47.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Xan_ur_permease	PF00860	182 - 599	5.5e-68	Permease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27810 AT2G27810 AT2G27810 AT2G27810
fragaria_vesca	FvH4_3g24260
malus_domestica	MD03G1135100.v1.1 MD11G1157800.v1.1
prunus_persica	Prupe.6G119500_v2.0.a1 Prupe.6G119500_v2.0.a1 Prupe.6G119500_v2.0.a1
pyrus_communis	pycom03g09100 pycom11g12810
rosa_chinensis	RchiOBHm_Chr5g0043401
rosa_laevigata	RLG00000034184
rosa_multiflora	Rmu_sc0000060.1_g000066 Rmu_sc0007797.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037480
rosa_rugosa	Rorug05G0205700
rosa_samantha	Rh5AG291400 Rh5BG298000 Rh5CG327500 Rh5DG307400
rosa_wichuraiana	Rw0G010300 Rw5G027030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1189
AccB1I	GGYRCC	1 cut(s)	229
AccII	CGCG	4 cut(s)	252, 389, 415, 2001
AclWI	GGATC	2 cut(s)	699, 712
AcoI	YGGCCR	2 cut(s)	145, 348
AcsI	RAATTY	1 cut(s)	779
AcuI	CTGAAG	4 cut(s)	273, 1158, 2040, 2059
AcyI	GRCGYC	1 cut(s)	230
AdeI	CACNNNGTG	1 cut(s)	1939
AfaI	GTAC	7 cut(s)	40, 243, 625, 1179, 1309, 1495, 1980
AfiI	CCNNNNNNNGG	5 cut(s)	35, 617, 980, 1281, 1430
AgsI	TTSAA	5 cut(s)	785, 860, 1574, 1782, 1850
AhlI	ACTAGT	1 cut(s)	1015
AjnI	CCWGG	7 cut(s)	83, 425, 523, 1274, 1429, 1965, 1981
AjuI	GAANNNNNNNTTGG	2 cut(s)	61, 93
AleI	CACNNNNGTG	1 cut(s)	1666
Alw21I	GWGCWC	2 cut(s)	513, 1533
Alw26I	GTCTC	2 cut(s)	119, 655
Alw44I	GTGCAC	1 cut(s)	1529
AlwI	GGATC	2 cut(s)	699, 712
Ama87I	CYCGRG	2 cut(s)	174, 245
ApaI	GGGCCC	2 cut(s)	360, 731
ApaLI	GTGCAC	1 cut(s)	1529
ApeKI	GCWGC	6 cut(s)	380, 938, 1121, 1691, 1884, 2068
ApoI	RAATTY	1 cut(s)	779
AspLEI	GCGC	5 cut(s)	232, 252, 277, 283, 391
AspS9I	GGNCC	9 cut(s)	52, 171, 356, 357, 727, 728, 1333, 1506, 1874
AsuC2I	CCSGG	3 cut(s)	36, 56, 169
AsuHPI	GGTGA	4 cut(s)	319, 918, 1912, 2113
AvaI	CYCGRG	2 cut(s)	174, 245
AvaII	GGWCC	3 cut(s)	52, 1506, 1874
BaeGI	GKGCMC	3 cut(s)	360, 731, 1533
BaeI	ACNNNNGTAYC	2 cut(s)	1299, 1332
BalI	TGGCCA	1 cut(s)	147
BamHI	GGATCC	1 cut(s)	704
BanI	GGYRCC	1 cut(s)	229
BanII	GRGCYC	5 cut(s)	217, 360, 402, 513, 731
BbsI	GAAGAC	1 cut(s)	1309
Bbv12I	GWGCWC	2 cut(s)	513, 1533
BbvCI	CCTCAGC	1 cut(s)	2025
BbvI	GCAGC	6 cut(s)	367, 925, 1108, 1678, 1896, 2055
BccI	CCATC	5 cut(s)	250, 323, 467, 1546, 2091
BceAI	ACGGC	2 cut(s)	1526, 1545
BcgI	CGANNNNNNTGC	4 cut(s)	113, 147, 620, 654
BciT130I	CCWGG	7 cut(s)	85, 427, 525, 1276, 1431, 1967, 1983
BciVI	GTATCC	1 cut(s)	628
BclI	TGATCA	1 cut(s)	906
BcnI	CCSGG	3 cut(s)	36, 56, 169
BcoDI	GTCTC	2 cut(s)	119, 655
BcuI	ACTAGT	1 cut(s)	1015
BfaI	CTAG	5 cut(s)	486, 746, 1016, 1631, 1737
BfmI	CTRYAG	2 cut(s)	827, 958
BfoI	RGCGCY	3 cut(s)	233, 278, 284
BfuAI	ACCTGC	1 cut(s)	1189
BfuI	GTATCC	1 cut(s)	628
BglI	GCCNNNNNGGC	1 cut(s)	169
BglII	AGATCT	1 cut(s)	1265
Bme18I	GGWCC	3 cut(s)	52, 1506, 1874
BmeT110I	CYCGRG	2 cut(s)	174, 245
BmgT120I	GGNCC	9 cut(s)	52, 171, 356, 357, 727, 728, 1333, 1506, 1874
BmrI	ACTGGG	1 cut(s)	354
BmsI	GCATC	8 cut(s)	431, 1193, 1373, 1403, 1421, 1643, 1674, 1818
BmuI	ACTGGG	1 cut(s)	354
BoxI	GACNNNNGTC	1 cut(s)	886
BpiI	GAAGAC	1 cut(s)	1309
BpmI	CTGGAG	1 cut(s)	1164
Bpu10I	CCTNAGC	1 cut(s)	2025
BpuEI	CTTGAG	2 cut(s)	1013, 1629
BpuMI	CCSGG	3 cut(s)	36, 56, 169
BsaHI	GRCGYC	1 cut(s)	230
BsaI	GGTCTC	1 cut(s)	119
BsaJI	CCNNGG	6 cut(s)	84, 167, 393, 413, 1274, 2055
BsaWI	WCCGGW	1 cut(s)	49
BsaXI	ACNNNNNCTCC	2 cut(s)	31, 61
Bsc4I	CCNNNNNNNGG	5 cut(s)	35, 617, 980, 1281, 1430
Bse118I	RCCGGY	3 cut(s)	98, 226, 1786
Bse1I	ACTGG	5 cut(s)	360, 914, 1328, 1470, 1501
Bse3DI	GCAATG	2 cut(s)	621, 1204
BseBI	CCWGG	7 cut(s)	85, 427, 525, 1276, 1431, 1967, 1983
BseDI	CCNNGG	6 cut(s)	84, 167, 393, 413, 1274, 2055
BseGI	GGATG	3 cut(s)	422, 1233, 1412
BseLI	CCNNNNNNNGG	5 cut(s)	35, 617, 980, 1281, 1430
BseMI	GCAATG	2 cut(s)	621, 1204
BseMII	CTCAG	2 cut(s)	526, 2016
BseNI	ACTGG	5 cut(s)	360, 914, 1328, 1470, 1501
BseRI	GAGGAG	2 cut(s)	328, 449
BseSI	GKGCMC	3 cut(s)	360, 731, 1533
BseXI	GCAGC	6 cut(s)	367, 925, 1108, 1678, 1896, 2055
BseYI	CCCAGC	1 cut(s)	189
BsgI	GTGCAG	1 cut(s)	1028
Bsh1236I	CGCG	4 cut(s)	252, 389, 415, 2001
Bsh1285I	CGRYCG	1 cut(s)	387
BshNI	GGYRCC	1 cut(s)	229
BsiEI	CGRYCG	1 cut(s)	387
BsiHKAI	GWGCWC	2 cut(s)	513, 1533
BsiHKCI	CYCGRG	2 cut(s)	174, 245
BsiSI	CCGG	8 cut(s)	35, 50, 56, 99, 120, 169, 227, 1787
BslFI	GGGAC	1 cut(s)	38
BslI	CCNNNNNNNGG	5 cut(s)	35, 617, 980, 1281, 1430
BsmAI	GTCTC	2 cut(s)	119, 655
BsmFI	GGGAC	1 cut(s)	38
BsmI	GAATGC	1 cut(s)	1946
Bso31I	GGTCTC	1 cut(s)	119
BsoBI	CYCGRG	2 cut(s)	174, 245
Bsp120I	GGGCCC	2 cut(s)	356, 727
Bsp1286I	GDGCHC	6 cut(s)	217, 360, 402, 513, 731, 1533
Bsp143I	GATC	5 cut(s)	196, 704, 906, 1265, 1593
BspCNI	CTCAG	2 cut(s)	525, 2017
BspFNI	CGCG	4 cut(s)	252, 389, 415, 2001
BspHI	TCATGA	1 cut(s)	816
BspMI	ACCTGC	1 cut(s)	1189
BspPI	GGATC	2 cut(s)	699, 712
BspQI	GCTCTTC	1 cut(s)	1226
BspT107I	GGYRCC	1 cut(s)	229
BspTNI	GGTCTC	1 cut(s)	119
BsrDI	GCAATG	2 cut(s)	621, 1204
BsrFI	RCCGGY	3 cut(s)	98, 226, 1786
BsrI	ACTGG	5 cut(s)	360, 914, 1328, 1470, 1501
BssAI	RCCGGY	3 cut(s)	98, 226, 1786
BssECI	CCNNGG	6 cut(s)	84, 167, 393, 413, 1274, 2055
BssMI	GATC	5 cut(s)	196, 704, 906, 1265, 1593
BssNI	GRCGYC	1 cut(s)	230
BssT1I	CCWWGG	1 cut(s)	2055
Bst2UI	CCWGG	7 cut(s)	85, 427, 525, 1276, 1431, 1967, 1983
Bst4CI	ACNGT	2 cut(s)	658, 1978
Bst6I	CTCTTC	3 cut(s)	305, 335, 1226
BstACI	GRCGYC	1 cut(s)	230
BstC8I	GCNNGC	6 cut(s)	136, 279, 378, 1585, 1689, 2046
BstDEI	CTNAG	7 cut(s)	90, 512, 1262, 1439, 1548, 2025, 2034
BstDSI	CCRYGG	2 cut(s)	393, 413
BstENI	CCTNNNNNAGG	1 cut(s)	1279
BstF5I	GGATG	3 cut(s)	422, 1233, 1412
BstFNI	CGCG	4 cut(s)	252, 389, 415, 2001
BstH2I	RGCGCY	3 cut(s)	233, 278, 284
BstHHI	GCGC	5 cut(s)	232, 252, 277, 283, 391
BstKTI	GATC	5 cut(s)	199, 707, 909, 1268, 1596
BstMAI	GTCTC	2 cut(s)	119, 655
BstMBI	GATC	5 cut(s)	196, 704, 906, 1265, 1593
BstMCI	CGRYCG	1 cut(s)	387
BstNI	CCWGG	7 cut(s)	85, 427, 525, 1276, 1431, 1967, 1983
BstNSI	RCATGY	2 cut(s)	1220, 1587
BstPAI	GACNNNNGTC	1 cut(s)	886
BstSFI	CTRYAG	2 cut(s)	827, 958
BstSLI	GKGCMC	3 cut(s)	360, 731, 1533
BstUI	CGCG	4 cut(s)	252, 389, 415, 2001
BstV1I	GCAGC	6 cut(s)	367, 925, 1108, 1678, 1896, 2055
BstV2I	GAAGAC	1 cut(s)	1309
BstX2I	RGATCY	2 cut(s)	704, 1265
BstXI	CCANNNNNNTGG	2 cut(s)	1302, 1477
BstYI	RGATCY	2 cut(s)	704, 1265
BsuI	GTATCC	1 cut(s)	628
BtgI	CCRYGG	2 cut(s)	393, 413
BtgZI	GCGATG	1 cut(s)	1697
BtsCI	GGATG	3 cut(s)	422, 1233, 1412
BtsI	GCAGTG	1 cut(s)	1661
BtsIMutI	CAGTG	7 cut(s)	367, 663, 921, 1321, 1477, 1661, 1974
BveI	ACCTGC	1 cut(s)	1189
Cac8I	GCNNGC	6 cut(s)	136, 279, 378, 1585, 1689, 2046
CciI	TCATGA	1 cut(s)	816
CfoI	GCGC	5 cut(s)	232, 252, 277, 283, 391
Cfr10I	RCCGGY	3 cut(s)	98, 226, 1786
Cfr13I	GGNCC	9 cut(s)	52, 171, 356, 357, 727, 728, 1333, 1506, 1874
Cfr42I	CCGCGG	1 cut(s)	416
CsiI	ACCWGGT	1 cut(s)	523
Csp6I	GTAC	7 cut(s)	39, 242, 624, 1178, 1308, 1494, 1979
CviQI	GTAC	7 cut(s)	39, 242, 624, 1178, 1308, 1494, 1979
DdeI	CTNAG	7 cut(s)	90, 512, 1262, 1439, 1548, 2025, 2034
DinI	GGCGCC	1 cut(s)	231
DpnI	GATC	5 cut(s)	198, 706, 908, 1267, 1595
DpnII	GATC	5 cut(s)	196, 704, 906, 1265, 1593
DraIII	CACNNNGTG	1 cut(s)	1939
EaeI	YGGCCR	2 cut(s)	145, 348
Eam1104I	CTCTTC	3 cut(s)	305, 335, 1226
EarI	CTCTTC	3 cut(s)	305, 335, 1226
EciI	GGCGGA	1 cut(s)	95
Ecl136II	GAGCTC	1 cut(s)	511
Eco130I	CCWWGG	1 cut(s)	2055
Eco147I	AGGCCT	1 cut(s)	1701
Eco24I	GRGCYC	5 cut(s)	217, 360, 402, 513, 731
Eco31I	GGTCTC	1 cut(s)	119
Eco32I	GATATC	1 cut(s)	153
Eco47I	GGWCC	3 cut(s)	52, 1506, 1874
Eco53kI	GAGCTC	1 cut(s)	511
Eco57I	CTGAAG	4 cut(s)	273, 1158, 2040, 2059
Eco88I	CYCGRG	2 cut(s)	174, 245
EcoICRI	GAGCTC	1 cut(s)	511
EcoNI	CCTNNNNNAGG	1 cut(s)	1279
EcoO109I	RGGNCCY	2 cut(s)	727, 728
EcoRII	CCWGG	7 cut(s)	83, 425, 523, 1274, 1429, 1965, 1981
EcoRV	GATATC	1 cut(s)	153
EcoT14I	CCWWGG	1 cut(s)	2055
EcoT22I	ATGCAT	1 cut(s)	1396
EcoT38I	GRGCYC	5 cut(s)	217, 360, 402, 513, 731
EgeI	GGCGCC	1 cut(s)	231
EheI	GGCGCC	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	2055
FalI	AAGNNNNNCTT	2 cut(s)	852, 884
FaqI	GGGAC	1 cut(s)	38
FauI	CCCGC	2 cut(s)	273, 1994
FauNDI	CATATG	1 cut(s)	498
FbaI	TGATCA	1 cut(s)	906
FokI	GGATG	3 cut(s)	409, 1240, 1399
FriOI	GRGCYC	5 cut(s)	217, 360, 402, 513, 731
FspBI	CTAG	5 cut(s)	486, 746, 1016, 1631, 1737
GlaI	GCGC	5 cut(s)	231, 251, 276, 282, 390
GsaI	CCCAGC	1 cut(s)	193
GsuI	CTGGAG	1 cut(s)	1164
HaeII	RGCGCY	3 cut(s)	233, 278, 284
HapII	CCGG	8 cut(s)	35, 50, 56, 99, 120, 169, 227, 1787
HhaI	GCGC	5 cut(s)	232, 252, 277, 283, 391
Hin1I	GRCGYC	1 cut(s)	230
Hin6I	GCGC	5 cut(s)	230, 250, 275, 281, 389
HinP1I	GCGC	5 cut(s)	230, 250, 275, 281, 389
HindIII	AAGCTT	1 cut(s)	1513
HinfI	GANTC	5 cut(s)	59, 140, 323, 789, 1373
HpaII	CCGG	8 cut(s)	35, 50, 56, 99, 120, 169, 227, 1787
HphI	GGTGA	4 cut(s)	319, 918, 1912, 2113
Hpy166II	GTNNAC	6 cut(s)	242, 742, 881, 1509, 1531, 1903
Hpy188I	TCNGA	9 cut(s)	13, 292, 328, 515, 1201, 1839, 2020, 2078, 2096
Hpy188III	TCNNGA	8 cut(s)	200, 672, 708, 817, 992, 1416, 1457, 1994
Hpy8I	GTNNAC	6 cut(s)	242, 742, 881, 1509, 1531, 1903
HpyAV	CCTTC	7 cut(s)	87, 297, 313, 814, 1454, 1888, 2083
HpyCH4III	ACNGT	2 cut(s)	658, 1978
HpyCH4IV	ACGT	1 cut(s)	1714
HpyF3I	CTNAG	7 cut(s)	90, 512, 1262, 1439, 1548, 2025, 2034
HpySE526I	ACGT	1 cut(s)	1714
Hsp92I	GRCGYC	1 cut(s)	230
HspAI	GCGC	5 cut(s)	230, 250, 275, 281, 389
KasI	GGCGCC	1 cut(s)	229
Ksp22I	TGATCA	1 cut(s)	906
KspI	CCGCGG	1 cut(s)	416
Kzo9I	GATC	5 cut(s)	196, 704, 906, 1265, 1593
LguI	GCTCTTC	1 cut(s)	1226
LmnI	GCTCC	5 cut(s)	397, 754, 823, 1145, 2041
Lsp1109I	GCAGC	6 cut(s)	367, 925, 1108, 1678, 1896, 2055
LweI	GCATC	8 cut(s)	431, 1193, 1373, 1403, 1421, 1643, 1674, 1818
MabI	ACCWGGT	1 cut(s)	523
MaeI	CTAG	5 cut(s)	486, 746, 1016, 1631, 1737
MaeII	ACGT	1 cut(s)	1714
MaeIII	GTNAC	3 cut(s)	676, 924, 1543
MalI	GATC	5 cut(s)	198, 706, 908, 1267, 1595
MboI	GATC	5 cut(s)	196, 704, 906, 1265, 1593
MboII	GAAGA	7 cut(s)	72, 322, 352, 1060, 1243, 1309, 1389
MfeI	CAATTG	1 cut(s)	933
MflI	RGATCY	2 cut(s)	704, 1265
MhlI	GDGCHC	6 cut(s)	217, 360, 402, 513, 731, 1533
MlsI	TGGCCA	1 cut(s)	147
MluNI	TGGCCA	1 cut(s)	147
Mly113I	GGCGCC	1 cut(s)	230
MlyI	GAGTC	3 cut(s)	68, 332, 783
MmeI	TCCRAC	5 cut(s)	30, 36, 925, 1600, 1848
Mox20I	TGGCCA	1 cut(s)	147
Mph1103I	ATGCAT	1 cut(s)	1396
MscI	TGGCCA	1 cut(s)	147
MseI	TTAA	3 cut(s)	369, 807, 1517
MslI	CAYNNNNRTG	4 cut(s)	1300, 1346, 1550, 1666
Msp20I	TGGCCA	1 cut(s)	147
MspA1I	CMGCKG	1 cut(s)	415
MspI	CCGG	8 cut(s)	35, 50, 56, 99, 120, 169, 227, 1787
MunI	CAATTG	1 cut(s)	933
Mva1269I	GAATGC	1 cut(s)	1946
MvaI	CCWGG	7 cut(s)	85, 427, 525, 1276, 1431, 1967, 1983
MvnI	CGCG	4 cut(s)	252, 389, 415, 2001
NarI	GGCGCC	1 cut(s)	230
NciI	CCSGG	3 cut(s)	36, 56, 169
NdeI	CATATG	1 cut(s)	498
NdeII	GATC	5 cut(s)	196, 704, 906, 1265, 1593
NmuCI	GTSAC	3 cut(s)	676, 924, 1543
NsiI	ATGCAT	1 cut(s)	1396
NspI	RCATGY	2 cut(s)	1220, 1587
OliI	CACNNNNGTG	1 cut(s)	1666
PaeI	GCATGC	1 cut(s)	1587
PagI	TCATGA	1 cut(s)	816
PceI	AGGCCT	1 cut(s)	1701
PciSI	GCTCTTC	1 cut(s)	1226
PctI	GAATGC	1 cut(s)	1946
PfeI	GAWTC	2 cut(s)	140, 1373
PflFI	GACNNNGTC	1 cut(s)	30
PfoI	TCCNGGA	3 cut(s)	54, 425, 1965
PleI	GAGTC	3 cut(s)	67, 331, 783
PluTI	GGCGCC	1 cut(s)	233
PpsI	GAGTC	3 cut(s)	67, 331, 783
PshAI	GACNNNNGTC	1 cut(s)	886
Psp124BI	GAGCTC	1 cut(s)	513
Psp6I	CCWGG	7 cut(s)	83, 425, 523, 1274, 1429, 1965, 1981
PspFI	CCCAGC	1 cut(s)	189
PspGI	CCWGG	7 cut(s)	83, 425, 523, 1274, 1429, 1965, 1981
PspOMI	GGGCCC	2 cut(s)	356, 727
PspPI	GGNCC	9 cut(s)	52, 171, 356, 357, 727, 728, 1333, 1506, 1874
PsuI	RGATCY	2 cut(s)	704, 1265
PsyI	GACNNNGTC	1 cut(s)	30
RsaI	GTAC	7 cut(s)	40, 243, 625, 1179, 1309, 1495, 1980
RsaNI	GTAC	7 cut(s)	39, 242, 624, 1178, 1308, 1494, 1979
RseI	CAYNNNNRTG	4 cut(s)	1300, 1346, 1550, 1666
SacI	GAGCTC	1 cut(s)	513
SacII	CCGCGG	1 cut(s)	416
SapI	GCTCTTC	1 cut(s)	1226
SaqAI	TTAA	3 cut(s)	369, 807, 1517
Sau3AI	GATC	5 cut(s)	196, 704, 906, 1265, 1593
Sau96I	GGNCC	9 cut(s)	52, 171, 356, 357, 727, 728, 1333, 1506, 1874
SchI	GAGTC	3 cut(s)	68, 332, 783
SduI	GDGCHC	6 cut(s)	217, 360, 402, 513, 731, 1533
SexAI	ACCWGGT	1 cut(s)	523
SfaNI	GCATC	8 cut(s)	431, 1193, 1373, 1403, 1421, 1643, 1674, 1818
SfcI	CTRYAG	2 cut(s)	827, 958
SfoI	GGCGCC	1 cut(s)	231
Sfr303I	CCGCGG	1 cut(s)	416
SgrBI	CCGCGG	1 cut(s)	416
SinI	GGWCC	3 cut(s)	52, 1506, 1874
SmiMI	CAYNNNNRTG	4 cut(s)	1300, 1346, 1550, 1666
SmlI	CTYRAG	2 cut(s)	992, 1644
SmoI	CTYRAG	2 cut(s)	992, 1644
SpeI	ACTAGT	1 cut(s)	1015
SphI	GCATGC	1 cut(s)	1587
SseBI	AGGCCT	1 cut(s)	1701
SspDI	GGCGCC	1 cut(s)	229
SspI	AATATT	2 cut(s)	894, 1744
SspMI	CTAG	5 cut(s)	486, 746, 1016, 1631, 1737
SstI	GAGCTC	1 cut(s)	513
StuI	AGGCCT	1 cut(s)	1701
StyI	CCWWGG	1 cut(s)	2055
TaaI	ACNGT	2 cut(s)	658, 1978
TaiI	ACGT	1 cut(s)	1717
TaqI	TCGA	7 cut(s)	201, 217, 338, 581, 1240, 1376, 1444
TauI	GCSGC	5 cut(s)	163, 166, 286, 350, 1661
TfiI	GAWTC	2 cut(s)	140, 1373
Tru1I	TTAA	3 cut(s)	369, 807, 1517
Tru9I	TTAA	3 cut(s)	369, 807, 1517
TscAI	CASTG	7 cut(s)	367, 663, 921, 1328, 1477, 1668, 1981
TseFI	GTSAC	3 cut(s)	676, 924, 1543
TseI	GCWGC	6 cut(s)	380, 938, 1121, 1691, 1884, 2068
Tsp45I	GTSAC	3 cut(s)	676, 924, 1543
TspDTI	ATGAA	5 cut(s)	515, 833, 1244, 1389, 1663
TspGWI	ACGGA	3 cut(s)	410, 1045, 1060
TspRI	CASTG	7 cut(s)	367, 663, 921, 1328, 1477, 1668, 1981
Tth111I	GACNNNGTC	1 cut(s)	30
VneI	GTGCAC	1 cut(s)	1529
VpaK11BI	GGWCC	3 cut(s)	52, 1506, 1874
XagI	CCTNNNNNAGG	1 cut(s)	1279
XapI	RAATTY	1 cut(s)	779
XceI	RCATGY	2 cut(s)	1220, 1587
XspI	CTAG	5 cut(s)	486, 746, 1016, 1631, 1737
Zsp2I	ATGCAT	1 cut(s)	1396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.