Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0007879

Physical Location & Seq

Genomic Coordinates Reverse (-)

7569170 .. 7577922

Gene Structure 8753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g09100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2121 bp

ATGTCCAACTCCGACCCCAAAACCCGACCCCGTCTGGGCCCATGGCCTCCGGTCCCGGAGTCCTCCCCAATGCCCCCTTCTTCCTGGGCTAAGAAAACCGGCTTCCGCCCCAAGTTCTCCGGCGAGACCAATGCCAGTGATTCTGGCCAGATATCCCTGCCGCCGCACCGGCCCCGAGAGCCCCAAACCCAGCCCGATCTCGAAGCTGGTCGGGCTCGACCCCAACCGGCGCCCAATGGTGTACCCGAGCGCGAGATGGCTACCCCACCACCAGCGCCAGGGCCGCCTTCAGAAAAGGACAATAAGGTGAAGAGGAGGAAGGAGTCTGATGGAGGGTCGAAGAGTGCGGCCAATGGGCCCAGTGGGGTTAATGGGCAGGCTGCGACTACGCCCACGGAGCCCAATTCGCAACCGCGGAGGGCGGCCAGGAGTGAGGAGGTGGTTGATGTTTTGCCACACGGGGTTGATGATGATGGGTATGTGGCTAGGCACTCTCATATGAAGTATGAGCTCAGAGATACACCTGGTCTTGTTCCCATTGGCCTCTATGGGTTCCAGCATTATCTCTCCATGTTGGGTTCGATAATTCTAATTCCACTCGTCATAGTTCCAGCAATGGGTGGTACTTATGAGGATACTGCAAATGTTGTCTCCACAGTGCTTTTTGTTTCGGGAGTAACCACTCTCTTGCAGACATCGTTTGGATCCAGATTGCCCTTGATACAGGGCCCCTCATTTGTTTACCTAGCTCCTGCATTGGCGATAATCAACTCCCCAGAATTTCAAGGACTCAATGGAAATAATTTTAAGCATATCATGAAGGAGCTACAGGGGGCTGTAATAATAGGTTCAGCTTTTCAAGCAATACTTGGATATAGTGGACTAATGTCAATATTTTTGAGGTTGATCGATCCAGTGGTTGTGTCACCAACAATTGCTGCTGTTGGACTTTCTTTCTATAGTTATGGTTTCCCGTTAATTGGTAATTGTCTTGAGATTGGTGCGGTGCAGATACTAGTGGTCATTATTTTTTCTCTTTACCTACGGAAGATATCCGTTTTTGGTCATCGTGTATTTCTGATATATGCGGTTCCGTTGGGTCTGGCAATCACATGGTCAGCTGCTTTCCTACTAACTGAAGCTGGAGCATATAGCTACAAAGGTTGTGATATAAATGTACCTGCATCAAACATAGTATCTGAACATTGCAGAAAGCATGTTTTGAGGATGAAGAGCTGTCGAGTTGATACTTCTCATGCACTAAGATCTGCCCCCTGGTTTAGGTTTCCCTATCCATTACAATGGGGTACTCCTGTCTTCCACTGGAAAATGGCCCTTGTCATGTGTGTGGTATCAATTATTGCATCAGTTGATTCGATTGGCTCATATCATGCATCTTCATTATTGGTGGCATCCAGACCTCCTACTCCTGGTGTTCTTAGTCGAGGGATTGGTCTGGAAGGTCTTTCTAGTGTCTTGGCTGGTCTATGGGGTACTGGAACAGGGTCCACGAGCTTAACTGAAAATGTGCACACAATAGCCGTCACTAAGATGGGAAGCCGTAGAGCTGTTGAATTGGGTGCATGCGTTTTGATCGTCTTATCCCTTGTCGGTAAAGTTGGAGGCTTTCTAGCATCTATTCCTCAAGTCGTGGTTGCCGCACTGCTGTGCTTCATGTGGGCGATGCTTGCTGCATTAGGCCTATCAAATCTACGTTATAGTGAGGCTGGAAGCTCTAGGAATATTATCATAGTCGGGTTATCTTTGTTTTTCTCACTTTCAATACCGGCCTACTTTCAGCAATATGGCATCTCTCCAAACTCCAACTTATCTGTTCCGAGTTATTTTCAACCATACATTGTAGCTTCTCATGGACCCTTCCGCAGCAAATATGGAGGGGTGAACTATGTGCTGAACACGTTATTCTCATTACACATGGTGGTTGCATTCCTTGTGGCTTTTATCCTGGATAACACTGTACCTGGCAATCGTCAAGAACGCGGGGTGTATGTGTGGTCTGAAGCTGAGGTTGCTAAGAGGGAGCCTGCTGTTGCCAAGGACTATGAGCTGCCCTTCAGAATTAGCAGGTTTTTCAGATGGGTGAAATGGGTTGGCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005345 GO:0005350 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006855 GO:0006863 GO:0008150 GO:0008324 GO:0015075 GO:0015205 GO:0015207 GO:0015208 GO:0015210 GO:0015238 GO:0015291 GO:0015293 GO:0015294 GO:0015318 GO:0015851 GO:0015853 GO:0015854 GO:0015855 GO:0015857 GO:0015893 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034220 GO:0035344 GO:0042221 GO:0042493 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072530 GO:0072531 GO:0098655 GO:0098657 GO:0098702 GO:0098710 GO:0098721 GO:0098739 GO:1903716 GO:1903791 GO:1904082 GO:1904823

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Xan_ur_permease

Protein Analysis

707

Amino Acids

76.29

Weight (kDa)

9.42

Isoelectric Point (pI)

45.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Xan_ur_permease	PF00860	182 - 599	6.9e-68	Permease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27810 AT2G27810 AT2G27810 AT2G27810
fragaria_vesca	FvH4_3g24260
malus_domestica	MD03G1135100.v1.1 MD11G1157800.v1.1
prunus_persica	Prupe.6G119500_v2.0.a1 Prupe.6G119500_v2.0.a1 Prupe.6G119500_v2.0.a1
pyrus_communis	pycom03g09100 pycom11g12810
rosa_chinensis	RchiOBHm_Chr5g0043401
rosa_laevigata	RLG00000034184
rosa_multiflora	Rmu_sc0000060.1_g000066 Rmu_sc0007797.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037480
rosa_rugosa	Rorug05G0205700
rosa_samantha	Rh5AG291400 Rh5BG298000 Rh5CG327500 Rh5DG307400
rosa_wichuraiana	Rw0G010300 Rw5G027030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1189, 2076
AccB1I	GGYRCC	1 cut(s)	229
AccII	CGCG	3 cut(s)	252, 415, 2001
AclWI	GGATC	3 cut(s)	699, 712, 905
AcoI	YGGCCR	3 cut(s)	145, 348, 423
AcsI	RAATTY	1 cut(s)	779
AcuI	CTGAAG	4 cut(s)	273, 1158, 2040, 2059
AcyI	GRCGYC	1 cut(s)	230
AdeI	CACNNNGTG	1 cut(s)	1939
AfaI	GTAC	6 cut(s)	243, 625, 1179, 1309, 1495, 1980
AfiI	CCNNNNNNNGG	6 cut(s)	35, 278, 617, 980, 1281, 1430
AflIII	ACRYGT	1 cut(s)	1917
AgsI	TTSAA	5 cut(s)	785, 860, 1574, 1782, 1850
AhlI	ACTAGT	1 cut(s)	1015
AjnI	CCWGG	8 cut(s)	83, 277, 425, 523, 1274, 1429, 1965, 1981
AjuI	GAANNNNNNNTTGG	2 cut(s)	61, 93
AleI	CACNNNNGTG	1 cut(s)	1666
Alw21I	GWGCWC	2 cut(s)	513, 1533
Alw26I	GTCTC	2 cut(s)	119, 655
Alw44I	GTGCAC	1 cut(s)	1529
AlwI	GGATC	3 cut(s)	699, 712, 905
Ama87I	CYCGRG	2 cut(s)	174, 245
ApaI	GGGCCC	3 cut(s)	41, 360, 731
ApaLI	GTGCAC	1 cut(s)	1529
ApeKI	GCWGC	6 cut(s)	380, 938, 1121, 1691, 1884, 2068
ApoI	RAATTY	1 cut(s)	779
AspLEI	GCGC	3 cut(s)	232, 252, 277
AsuC2I	CCSGG	1 cut(s)	56
AsuHPI	GGTGA	4 cut(s)	319, 918, 1912, 2113
AvaI	CYCGRG	2 cut(s)	174, 245
AvaII	GGWCC	3 cut(s)	52, 1506, 1874
BaeGI	GKGCMC	4 cut(s)	41, 360, 731, 1533
BaeI	ACNNNNGTAYC	2 cut(s)	1299, 1332
BalI	TGGCCA	1 cut(s)	147
BamHI	GGATCC	1 cut(s)	704
BanI	GGYRCC	1 cut(s)	229
BanII	GRGCYC	7 cut(s)	41, 183, 217, 360, 402, 513, 731
BauI	CACGAG	1 cut(s)	1510
BbsI	GAAGAC	1 cut(s)	1309
Bbv12I	GWGCWC	2 cut(s)	513, 1533
BbvCI	CCTCAGC	1 cut(s)	2025
BbvI	GCAGC	6 cut(s)	367, 925, 1108, 1678, 1896, 2055
BccI	CCATC	5 cut(s)	250, 323, 467, 1546, 2091
BceAI	ACGGC	2 cut(s)	1526, 1545
BcgI	CGANNNNNNTGC	2 cut(s)	113, 147
BciT130I	CCWGG	8 cut(s)	85, 279, 427, 525, 1276, 1431, 1967, 1983
BciVI	GTATCC	1 cut(s)	628
BcnI	CCSGG	1 cut(s)	56
BcoDI	GTCTC	2 cut(s)	119, 655
BcuI	ACTAGT	1 cut(s)	1015
BfaI	CTAG	6 cut(s)	486, 746, 1016, 1470, 1631, 1737
BfmI	CTRYAG	2 cut(s)	827, 958
BfoI	RGCGCY	2 cut(s)	233, 278
BfuAI	ACCTGC	2 cut(s)	1189, 2076
BfuI	GTATCC	1 cut(s)	628
BglI	GCCNNNNNGGC	1 cut(s)	169
BglII	AGATCT	1 cut(s)	1265
Bme1390I	CCNGG	9 cut(s)	56, 85, 279, 427, 525, 1276, 1431, 1967, 1983
Bme18I	GGWCC	3 cut(s)	52, 1506, 1874
BmeT110I	CYCGRG	2 cut(s)	174, 245
BmrFI	CCNGG	9 cut(s)	56, 85, 279, 427, 525, 1276, 1431, 1967, 1983
BmrI	ACTGGG	1 cut(s)	354
BmsI	GCATC	7 cut(s)	1193, 1373, 1403, 1421, 1643, 1674, 1818
BmuI	ACTGGG	1 cut(s)	354
BoxI	GACNNNNGTC	1 cut(s)	886
BpiI	GAAGAC	1 cut(s)	1309
BpmI	CTGGAG	1 cut(s)	1164
Bpu10I	CCTNAGC	1 cut(s)	2025
BpuEI	CTTGAG	2 cut(s)	1013, 1629
BpuMI	CCSGG	1 cut(s)	56
Bsa29I	ATCGAT	1 cut(s)	909
BsaHI	GRCGYC	1 cut(s)	230
BsaI	GGTCTC	1 cut(s)	119
BsaJI	CCNNGG	7 cut(s)	41, 84, 278, 393, 413, 1274, 2055
BsaWI	WCCGGW	1 cut(s)	49
Bsc4I	CCNNNNNNNGG	6 cut(s)	35, 278, 617, 980, 1281, 1430
Bse118I	RCCGGY	4 cut(s)	98, 168, 226, 1786
Bse1I	ACTGG	5 cut(s)	135, 360, 914, 1328, 1501
Bse3DI	GCAATG	2 cut(s)	621, 1204
BseBI	CCWGG	8 cut(s)	85, 279, 427, 525, 1276, 1431, 1967, 1983
BseCI	ATCGAT	1 cut(s)	909
BseDI	CCNNGG	7 cut(s)	41, 84, 278, 393, 413, 1274, 2055
BseGI	GGATG	2 cut(s)	1233, 1412
BseLI	CCNNNNNNNGG	6 cut(s)	35, 278, 617, 980, 1281, 1430
BseMI	GCAATG	2 cut(s)	621, 1204
BseMII	CTCAG	2 cut(s)	526, 2016
BseNI	ACTGG	5 cut(s)	135, 360, 914, 1328, 1501
BseRI	GAGGAG	2 cut(s)	328, 449
BseSI	GKGCMC	4 cut(s)	41, 360, 731, 1533
BseXI	GCAGC	6 cut(s)	367, 925, 1108, 1678, 1896, 2055
BseYI	CCCAGC	1 cut(s)	189
BsgI	GTGCAG	1 cut(s)	1028
Bsh1236I	CGCG	3 cut(s)	252, 415, 2001
BshNI	GGYRCC	1 cut(s)	229
BshVI	ATCGAT	1 cut(s)	909
BsiHKAI	GWGCWC	2 cut(s)	513, 1533
BsiHKCI	CYCGRG	2 cut(s)	174, 245
BsiSI	CCGG	7 cut(s)	50, 56, 99, 120, 169, 227, 1787
BslFI	GGGAC	1 cut(s)	38
BslI	CCNNNNNNNGG	6 cut(s)	35, 278, 617, 980, 1281, 1430
BsmAI	GTCTC	2 cut(s)	119, 655
BsmFI	GGGAC	1 cut(s)	38
BsmI	GAATGC	1 cut(s)	1946
Bso31I	GGTCTC	1 cut(s)	119
BsoBI	CYCGRG	2 cut(s)	174, 245
Bsp120I	GGGCCC	3 cut(s)	37, 356, 727
Bsp1286I	GDGCHC	8 cut(s)	41, 183, 217, 360, 402, 513, 731, 1533
Bsp143I	GATC	6 cut(s)	196, 704, 906, 910, 1265, 1593
Bsp19I	CCATGG	1 cut(s)	41
BspCNI	CTCAG	2 cut(s)	525, 2017
BspDI	ATCGAT	1 cut(s)	909
BspFNI	CGCG	3 cut(s)	252, 415, 2001
BspHI	TCATGA	1 cut(s)	816
BspMI	ACCTGC	2 cut(s)	1189, 2076
BspPI	GGATC	3 cut(s)	699, 712, 905
BspQI	GCTCTTC	1 cut(s)	1226
BspT107I	GGYRCC	1 cut(s)	229
BspTNI	GGTCTC	1 cut(s)	119
BsrDI	GCAATG	2 cut(s)	621, 1204
BsrFI	RCCGGY	4 cut(s)	98, 168, 226, 1786
BsrI	ACTGG	5 cut(s)	135, 360, 914, 1328, 1501
BssAI	RCCGGY	4 cut(s)	98, 168, 226, 1786
BssECI	CCNNGG	7 cut(s)	41, 84, 278, 393, 413, 1274, 2055
BssMI	GATC	6 cut(s)	196, 704, 906, 910, 1265, 1593
BssNI	GRCGYC	1 cut(s)	230
BssSI	CACGAG	1 cut(s)	1510
BssT1I	CCWWGG	2 cut(s)	41, 2055
Bst2BI	CACGAG	1 cut(s)	1510
Bst2UI	CCWGG	8 cut(s)	85, 279, 427, 525, 1276, 1431, 1967, 1983
Bst4CI	ACNGT	2 cut(s)	658, 1978
Bst6I	CTCTTC	3 cut(s)	305, 335, 1226
BstACI	GRCGYC	1 cut(s)	230
BstC8I	GCNNGC	4 cut(s)	378, 1585, 1689, 2046
BstDEI	CTNAG	7 cut(s)	90, 512, 1262, 1439, 1548, 2025, 2034
BstDSI	CCRYGG	3 cut(s)	41, 393, 413
BstENI	CCTNNNNNAGG	1 cut(s)	1279
BstF5I	GGATG	2 cut(s)	1233, 1412
BstFNI	CGCG	3 cut(s)	252, 415, 2001
BstH2I	RGCGCY	2 cut(s)	233, 278
BstHHI	GCGC	3 cut(s)	232, 252, 277
BstKTI	GATC	6 cut(s)	199, 707, 909, 913, 1268, 1596
BstMAI	GTCTC	2 cut(s)	119, 655
BstMBI	GATC	6 cut(s)	196, 704, 906, 910, 1265, 1593
BstMWI	GCNNNNNNNGC	9 cut(s)	169, 178, 212, 283, 397, 406, 860, 1688, 2030
BstNI	CCWGG	8 cut(s)	85, 279, 427, 525, 1276, 1431, 1967, 1983
BstNSI	RCATGY	2 cut(s)	1220, 1587
BstPAI	GACNNNNGTC	1 cut(s)	886
BstSCI	CCNGG	9 cut(s)	54, 83, 277, 425, 523, 1274, 1429, 1965, 1981
BstSFI	CTRYAG	2 cut(s)	827, 958
BstSLI	GKGCMC	4 cut(s)	41, 360, 731, 1533
BstUI	CGCG	3 cut(s)	252, 415, 2001
BstV1I	GCAGC	6 cut(s)	367, 925, 1108, 1678, 1896, 2055
BstV2I	GAAGAC	1 cut(s)	1309
BstX2I	RGATCY	2 cut(s)	704, 1265
BstXI	CCANNNNNNTGG	1 cut(s)	1302
BstYI	RGATCY	2 cut(s)	704, 1265
Bsu15I	ATCGAT	1 cut(s)	909
BsuI	GTATCC	1 cut(s)	628
BsuTUI	ATCGAT	1 cut(s)	909
BtgI	CCRYGG	3 cut(s)	41, 393, 413
BtgZI	GCGATG	1 cut(s)	1697
BtsCI	GGATG	2 cut(s)	1233, 1412
BtsI	GCAGTG	1 cut(s)	1661
BtsIMutI	CAGTG	7 cut(s)	142, 367, 663, 921, 1321, 1661, 1974
BveI	ACCTGC	2 cut(s)	1189, 2076
Cac8I	GCNNGC	4 cut(s)	378, 1585, 1689, 2046
CciI	TCATGA	1 cut(s)	816
CfoI	GCGC	3 cut(s)	232, 252, 277
Cfr10I	RCCGGY	4 cut(s)	98, 168, 226, 1786
Cfr42I	CCGCGG	1 cut(s)	416
ClaI	ATCGAT	1 cut(s)	909
CsiI	ACCWGGT	1 cut(s)	523
Csp6I	GTAC	6 cut(s)	242, 624, 1178, 1308, 1494, 1979
CviQI	GTAC	6 cut(s)	242, 624, 1178, 1308, 1494, 1979
DdeI	CTNAG	7 cut(s)	90, 512, 1262, 1439, 1548, 2025, 2034
DinI	GGCGCC	1 cut(s)	231
DpnI	GATC	6 cut(s)	198, 706, 908, 912, 1267, 1595
DpnII	GATC	6 cut(s)	196, 704, 906, 910, 1265, 1593
DraIII	CACNNNGTG	1 cut(s)	1939
EaeI	YGGCCR	3 cut(s)	145, 348, 423
Eam1104I	CTCTTC	3 cut(s)	305, 335, 1226
EarI	CTCTTC	3 cut(s)	305, 335, 1226
EciI	GGCGGA	1 cut(s)	95
Ecl136II	GAGCTC	1 cut(s)	511
Eco130I	CCWWGG	2 cut(s)	41, 2055
Eco147I	AGGCCT	1 cut(s)	1701
Eco24I	GRGCYC	7 cut(s)	41, 183, 217, 360, 402, 513, 731
Eco31I	GGTCTC	1 cut(s)	119
Eco32I	GATATC	2 cut(s)	153, 1053
Eco47I	GGWCC	3 cut(s)	52, 1506, 1874
Eco53kI	GAGCTC	1 cut(s)	511
Eco57I	CTGAAG	4 cut(s)	273, 1158, 2040, 2059
Eco88I	CYCGRG	2 cut(s)	174, 245
EcoICRI	GAGCTC	1 cut(s)	511
EcoNI	CCTNNNNNAGG	1 cut(s)	1279
EcoO109I	RGGNCCY	2 cut(s)	727, 728
EcoRII	CCWGG	8 cut(s)	83, 277, 425, 523, 1274, 1429, 1965, 1981
EcoRV	GATATC	2 cut(s)	153, 1053
EcoT14I	CCWWGG	2 cut(s)	41, 2055
EcoT22I	ATGCAT	1 cut(s)	1396
EcoT38I	GRGCYC	7 cut(s)	41, 183, 217, 360, 402, 513, 731
EgeI	GGCGCC	1 cut(s)	231
EheI	GGCGCC	1 cut(s)	231
ErhI	CCWWGG	2 cut(s)	41, 2055
FalI	AAGNNNNNCTT	2 cut(s)	852, 884
FaqI	GGGAC	1 cut(s)	38
FauI	CCCGC	1 cut(s)	1994
FauNDI	CATATG	1 cut(s)	498
FokI	GGATG	2 cut(s)	1240, 1399
FriOI	GRGCYC	7 cut(s)	41, 183, 217, 360, 402, 513, 731
FspBI	CTAG	6 cut(s)	486, 746, 1016, 1470, 1631, 1737
GlaI	GCGC	3 cut(s)	231, 251, 276
GsaI	CCCAGC	1 cut(s)	193
GsuI	CTGGAG	1 cut(s)	1164
HaeII	RGCGCY	2 cut(s)	233, 278
HapII	CCGG	7 cut(s)	50, 56, 99, 120, 169, 227, 1787
HhaI	GCGC	3 cut(s)	232, 252, 277
Hin1I	GRCGYC	1 cut(s)	230
Hin6I	GCGC	3 cut(s)	230, 250, 275
HinP1I	GCGC	3 cut(s)	230, 250, 275
HinfI	GANTC	5 cut(s)	59, 140, 323, 789, 1373
HpaII	CCGG	7 cut(s)	50, 56, 99, 120, 169, 227, 1787
HphI	GGTGA	4 cut(s)	319, 918, 1912, 2113
Hpy166II	GTNNAC	6 cut(s)	242, 742, 881, 1509, 1531, 1903
Hpy188III	TCNNGA	8 cut(s)	200, 672, 708, 817, 992, 1416, 1457, 1994
Hpy8I	GTNNAC	6 cut(s)	242, 742, 881, 1509, 1531, 1903
HpyAV	CCTTC	7 cut(s)	87, 297, 313, 814, 1454, 1888, 2083
HpyCH4III	ACNGT	2 cut(s)	658, 1978
HpyCH4IV	ACGT	2 cut(s)	1714, 1919
HpyF10VI	GCNNNNNNNGC	9 cut(s)	169, 178, 212, 283, 397, 406, 860, 1688, 2030
HpyF3I	CTNAG	7 cut(s)	90, 512, 1262, 1439, 1548, 2025, 2034
HpySE526I	ACGT	2 cut(s)	1714, 1919
Hsp92I	GRCGYC	1 cut(s)	230
HspAI	GCGC	3 cut(s)	230, 250, 275
KasI	GGCGCC	1 cut(s)	229
KspI	CCGCGG	1 cut(s)	416
Kzo9I	GATC	6 cut(s)	196, 704, 906, 910, 1265, 1593
LguI	GCTCTTC	1 cut(s)	1226
LmnI	GCTCC	5 cut(s)	397, 754, 823, 1145, 2041
Lsp1109I	GCAGC	6 cut(s)	367, 925, 1108, 1678, 1896, 2055
LweI	GCATC	7 cut(s)	1193, 1373, 1403, 1421, 1643, 1674, 1818
MabI	ACCWGGT	1 cut(s)	523
MaeI	CTAG	6 cut(s)	486, 746, 1016, 1470, 1631, 1737
MaeII	ACGT	2 cut(s)	1714, 1919
MaeIII	GTNAC	3 cut(s)	676, 924, 1543
MalI	GATC	6 cut(s)	198, 706, 908, 912, 1267, 1595
MboI	GATC	6 cut(s)	196, 704, 906, 910, 1265, 1593
MboII	GAAGA	7 cut(s)	72, 322, 352, 1060, 1243, 1309, 1389
MfeI	CAATTG	1 cut(s)	933
MflI	RGATCY	2 cut(s)	704, 1265
MhlI	GDGCHC	8 cut(s)	41, 183, 217, 360, 402, 513, 731, 1533
MlsI	TGGCCA	1 cut(s)	147
MluNI	TGGCCA	1 cut(s)	147
Mly113I	GGCGCC	1 cut(s)	230
MlyI	GAGTC	3 cut(s)	68, 332, 783
MmeI	TCCRAC	5 cut(s)	30, 36, 925, 1600, 1848
Mox20I	TGGCCA	1 cut(s)	147
Mph1103I	ATGCAT	1 cut(s)	1396
MscI	TGGCCA	1 cut(s)	147
MseI	TTAA	4 cut(s)	369, 807, 977, 1517
MslI	CAYNNNNRTG	4 cut(s)	1300, 1346, 1550, 1666
Msp20I	TGGCCA	1 cut(s)	147
MspA1I	CMGCKG	2 cut(s)	415, 1121
MspI	CCGG	7 cut(s)	50, 56, 99, 120, 169, 227, 1787
MspR9I	CCNGG	9 cut(s)	56, 85, 279, 427, 525, 1276, 1431, 1967, 1983
MunI	CAATTG	1 cut(s)	933
Mva1269I	GAATGC	1 cut(s)	1946
MvaI	CCWGG	8 cut(s)	85, 279, 427, 525, 1276, 1431, 1967, 1983
MvnI	CGCG	3 cut(s)	252, 415, 2001
MwoI	GCNNNNNNNGC	9 cut(s)	169, 178, 212, 283, 397, 406, 860, 1688, 2030
NarI	GGCGCC	1 cut(s)	230
NciI	CCSGG	1 cut(s)	56
NcoI	CCATGG	1 cut(s)	41
NdeI	CATATG	1 cut(s)	498
NdeII	GATC	6 cut(s)	196, 704, 906, 910, 1265, 1593
NmuCI	GTSAC	2 cut(s)	924, 1543
NsiI	ATGCAT	1 cut(s)	1396
NspI	RCATGY	2 cut(s)	1220, 1587
OliI	CACNNNNGTG	1 cut(s)	1666
PaeI	GCATGC	1 cut(s)	1587
PagI	TCATGA	1 cut(s)	816
PceI	AGGCCT	1 cut(s)	1701
PciSI	GCTCTTC	1 cut(s)	1226
PctI	GAATGC	1 cut(s)	1946
PfeI	GAWTC	2 cut(s)	140, 1373
PflFI	GACNNNGTC	1 cut(s)	30
PfoI	TCCNGGA	2 cut(s)	54, 1965
PleI	GAGTC	3 cut(s)	67, 331, 783
PluTI	GGCGCC	1 cut(s)	233
PpsI	GAGTC	3 cut(s)	67, 331, 783
PshAI	GACNNNNGTC	1 cut(s)	886
Psp124BI	GAGCTC	1 cut(s)	513
Psp6I	CCWGG	8 cut(s)	83, 277, 425, 523, 1274, 1429, 1965, 1981
PspFI	CCCAGC	1 cut(s)	189
PspGI	CCWGG	8 cut(s)	83, 277, 425, 523, 1274, 1429, 1965, 1981
PspOMI	GGGCCC	3 cut(s)	37, 356, 727
PsuI	RGATCY	2 cut(s)	704, 1265
PsyI	GACNNNGTC	1 cut(s)	30
PvuII	CAGCTG	1 cut(s)	1121
RsaI	GTAC	6 cut(s)	243, 625, 1179, 1309, 1495, 1980
RsaNI	GTAC	6 cut(s)	242, 624, 1178, 1308, 1494, 1979
RseI	CAYNNNNRTG	4 cut(s)	1300, 1346, 1550, 1666
SacI	GAGCTC	1 cut(s)	513
SacII	CCGCGG	1 cut(s)	416
SapI	GCTCTTC	1 cut(s)	1226
SaqAI	TTAA	4 cut(s)	369, 807, 977, 1517
Sau3AI	GATC	6 cut(s)	196, 704, 906, 910, 1265, 1593
SchI	GAGTC	3 cut(s)	68, 332, 783
ScrFI	CCNGG	9 cut(s)	56, 85, 279, 427, 525, 1276, 1431, 1967, 1983
SduI	GDGCHC	8 cut(s)	41, 183, 217, 360, 402, 513, 731, 1533
SexAI	ACCWGGT	1 cut(s)	523
SfaNI	GCATC	7 cut(s)	1193, 1373, 1403, 1421, 1643, 1674, 1818
SfcI	CTRYAG	2 cut(s)	827, 958
SfoI	GGCGCC	1 cut(s)	231
Sfr303I	CCGCGG	1 cut(s)	416
SgrBI	CCGCGG	1 cut(s)	416
SinI	GGWCC	3 cut(s)	52, 1506, 1874
SmiMI	CAYNNNNRTG	4 cut(s)	1300, 1346, 1550, 1666
SmlI	CTYRAG	2 cut(s)	992, 1644
SmoI	CTYRAG	2 cut(s)	992, 1644
SpeI	ACTAGT	1 cut(s)	1015
SphI	GCATGC	1 cut(s)	1587
SseBI	AGGCCT	1 cut(s)	1701
SspDI	GGCGCC	1 cut(s)	229
SspI	AATATT	2 cut(s)	894, 1744
SspMI	CTAG	6 cut(s)	486, 746, 1016, 1470, 1631, 1737
SstI	GAGCTC	1 cut(s)	513
StuI	AGGCCT	1 cut(s)	1701
StyD4I	CCNGG	9 cut(s)	54, 83, 277, 425, 523, 1274, 1429, 1965, 1981
StyI	CCWWGG	2 cut(s)	41, 2055
TaaI	ACNGT	2 cut(s)	658, 1978
TaiI	ACGT	2 cut(s)	1717, 1922
TaqI	TCGA	8 cut(s)	201, 217, 338, 581, 909, 1240, 1376, 1444
TauI	GCSGC	6 cut(s)	163, 166, 286, 350, 425, 1661
TfiI	GAWTC	2 cut(s)	140, 1373
Tru1I	TTAA	4 cut(s)	369, 807, 977, 1517
Tru9I	TTAA	4 cut(s)	369, 807, 977, 1517
TscAI	CASTG	7 cut(s)	142, 367, 663, 921, 1328, 1668, 1981
TseFI	GTSAC	2 cut(s)	924, 1543
TseI	GCWGC	6 cut(s)	380, 938, 1121, 1691, 1884, 2068
Tsp45I	GTSAC	2 cut(s)	924, 1543
TspDTI	ATGAA	5 cut(s)	515, 833, 1244, 1389, 1663
TspGWI	ACGGA	4 cut(s)	410, 1045, 1060, 1083
TspRI	CASTG	7 cut(s)	142, 367, 663, 921, 1328, 1668, 1981
Tth111I	GACNNNGTC	1 cut(s)	30
VneI	GTGCAC	1 cut(s)	1529
VpaK11BI	GGWCC	3 cut(s)	52, 1506, 1874
XagI	CCTNNNNNAGG	1 cut(s)	1279
XapI	RAATTY	1 cut(s)	779
XceI	RCATGY	2 cut(s)	1220, 1587
XspI	CTAG	6 cut(s)	486, 746, 1016, 1470, 1631, 1737
Zsp2I	ATGCAT	1 cut(s)	1396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.